Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 7.6e-169 597.0 292 100.0
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 1.7e-168 595.9 292 99.7
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 2.4e-167 592.0 292 98.6
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 1.7e-165 585.9 290 97.6
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 1.7e-165 585.9 290 97.6
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 8.1e-163 577.0 290 96.2
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 2.4e-159 565.5 292 93.8
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 2.7e-158 562.0 292 92.8
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 4.6e-158 561.2 292 93.2
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 2.5e-156 555.4 292 92.1
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 4.8e-155 551.2 292 91.1
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 4.0e-154 548.1 290 90.3
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 4.0e-154 548.1 290 90.3
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 5.3e-154 547.7 292 90.8
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 1.5e-153 546.2 290 90.0
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 1.5e-153 546.2 290 90.0
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 2.0e-153 545.8 291 89.7
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 2.9e-152 542.0 292 88.0
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 3.6e-147 525.0 292 85.6
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 6.9e-146 520.8 292 82.9
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 6.9e-146 520.8 292 83.2
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 4.5e-145 518.1 292 82.9
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 5.8e-145 517.7 292 82.5
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 9.9e-145 516.9 292 83.9
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 9.9e-145 516.9 292 82.9
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 3.8e-144 515.0 292 82.5
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 4.9e-144 514.6 290 81.7
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 1.1e-143 513.5 290 81.4
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 1.9e-143 512.7 289 82.4
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 2.4e-143 512.3 292 82.2
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 3.2e-143 511.9 292 82.2
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 3.2e-143 511.9 292 81.5
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 7.1e-143 510.8 292 80.8
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 7.1e-143 510.8 292 81.2
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 1.6e-142 509.6 294 83.3
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 1.6e-142 509.6 292 81.2
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 6.0e-142 507.7 287 81.5
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 6.0e-142 507.7 287 81.5
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 6.0e-142 507.7 292 81.5
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 7.9e-142 507.3 291 81.1
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 7.9e-142 507.3 292 80.1
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 1.0e-141 506.9 288 80.6
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 1.3e-141 506.5 292 80.8
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 1.3e-141 506.5 292 81.2
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.3e-141 506.5 292 81.2
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 1.8e-141 506.1 292 80.1
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 2.3e-141 505.8 288 80.6
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 3.0e-141 505.4 292 80.8
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 3.0e-141 505.4 292 80.8
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 5.1e-141 504.6 292 81.5
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 6.7e-141 504.2 292 80.5
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 1.1e-140 503.4 292 80.1
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 1.1e-140 503.4 292 80.1
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.1e-140 503.4 292 80.5
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 1.5e-140 503.1 289 80.3
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 1.9e-140 502.7 292 79.5
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 1.9e-140 502.7 288 80.6
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 1.9e-140 502.7 292 80.5
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 2.5e-140 502.3 288 79.9
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 3.3e-140 501.9 290 80.7
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 4.3e-140 501.5 292 79.8
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 4.3e-140 501.5 292 80.1
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 5.6e-140 501.1 294 80.3
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 9.6e-140 500.4 292 81.5
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 9.6e-140 500.4 287 80.5
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 1.3e-139 500.0 290 80.0
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.3e-139 500.0 292 80.8
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 3.7e-139 498.4 288 79.5
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 3.7e-139 498.4 292 78.8
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 4.8e-139 498.0 290 80.0
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 6.2e-139 497.7 292 80.5
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 1.1e-138 496.9 290 80.3
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 3.1e-138 495.4 292 81.2
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 4.0e-138 495.0 288 79.5
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 5.3e-138 494.6 291 78.4
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 1.5e-137 493.0 292 78.1
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 1.5e-137 493.0 292 80.8
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 2.0e-137 492.7 321 72.6
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 2.0e-137 492.7 290 79.0
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 3.4e-137 491.9 280 80.4
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 3.4e-137 491.9 289 80.3
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 5.8e-137 491.1 289 78.9
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 5.8e-137 491.1 290 77.9
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 1.3e-136 490.0 287 78.0
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 2.9e-136 488.8 292 78.8
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 6.5e-136 487.6 292 79.1
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 8.4e-136 487.3 291 79.4
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 1.4e-135 486.5 273 83.9
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 1.9e-135 486.1 292 77.7
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 1.9e-135 486.1 292 80.1
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 9.3e-135 483.8 289 77.2
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 9.3e-135 483.8 287 78.0
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 3.5e-134 481.9 290 76.2
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 1.8e-133 479.6 289 78.9
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 1.1e-132 476.9 292 78.1
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 7.4e-132 474.2 290 75.5
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 2.1e-131 472.6 273 80.6
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 6.3e-131 471.1 291 74.6
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 3.1e-130 468.8 291 73.9
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 4.1e-130 468.4 270 81.5
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 5.3e-130 468.0 289 75.1
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 4.5e-129 464.9 290 75.9
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 3.8e-128 461.8 313 72.8
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 1.9e-127 459.5 271 79.0
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 2.1e-126 456.1 251 82.9
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 8.7e-125 450.7 292 73.6
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 3.3e-124 448.7 271 76.4
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 2.2e-123 446.0 292 72.9
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 7.7e-121 437.6 310 67.7
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 3.2e-119 432.2 292 71.2
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 3.2e-119 432.2 283 69.6
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 6.3e-115 417.9 281 66.9
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 8.2e-115 417.5 271 73.1
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 3.1e-114 415.6 286 66.1
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 1.0e-112 410.6 266 69.9
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 2.0e-108 396.4 273 65.9
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 3.3e-108 395.6 281 64.1
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 5.2e-101 371.7 223 78.5
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 4.5e-89 332.0 306 56.9
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 4.9e-83 312.0 194 76.3
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 6.3e-83 311.6 285 49.8
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 2.7e-81 306.2 183 80.3
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 4.5e-81 305.4 190 75.3
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 1.5e-79 300.4 294 51.4
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 3.6e-78 295.8 173 81.5
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 4.4e-76 288.9 290 51.4
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 2.0e-73 280.0 188 68.1
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 8.0e-70 268.1 293 46.8
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 6.6e-56 221.9 313 42.5
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 5.2e-53 212.2 224 50.9
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 2.6e-52 209.9 164 61.6
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 9.9e-52 208.0 221 51.1
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 3.4e-44 183.0 114 72.8
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 3.8e-43 179.5 101 82.2
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 6.4e-43 178.7 102 80.4
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 5.1e-40 169.1 97 80.4
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 4.0e-29 132.9 77 79.2
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 8.2e-22 108.6 164 38.4
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.1e-21 108.2 97 58.8
MBI12_g19406_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D242193 5.5e-10 69.3 51 62.7
Prupe.1G567700 Prunus persica HOM05D005419 ORTHO05D019206 1.0e-08 65.1 40 80.0


User provided reference genes

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