Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 9.4e-56 219.9 109 100.0
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 8.2e-36 153.7 84 92.9
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 5.9e-34 147.5 84 89.3
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 7.5e-21 104.0 53 96.2
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 7.5e-21 104.0 53 96.2
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 7.5e-21 104.0 53 96.2
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 7.5e-21 104.0 53 96.2
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 7.5e-21 104.0 53 96.2
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 1.3e-20 103.2 53 96.2
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 1.7e-20 102.8 53 96.2
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 1.7e-20 102.8 53 96.2
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 1.7e-20 102.8 53 96.2
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 1.7e-20 102.8 53 96.2
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 2.8e-20 102.1 53 94.3
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 3.7e-20 101.7 53 94.3
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 3.7e-20 101.7 52 96.2
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 3.7e-20 101.7 52 96.2
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 3.7e-20 101.7 53 94.3
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 3.7e-20 101.7 53 94.3
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 6.3e-20 100.9 53 92.5
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 8.3e-20 100.5 53 92.5
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 8.3e-20 100.5 70 75.7
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 8.3e-20 100.5 53 92.5
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 8.3e-20 100.5 53 92.5
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 8.6e-17 90.5 53 77.4
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 2.8e-15 85.5 52 75.0
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 4.7e-15 84.7 52 73.1
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 4.7e-15 84.7 52 73.1
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 6.1e-15 84.3 61 73.8
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 2.3e-14 82.4 52 69.2
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 3.0e-14 82.0 52 71.2
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 4.0e-14 81.6 52 73.1
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 6.8e-14 80.9 52 71.2
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 6.8e-14 80.9 52 69.2
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 6.8e-14 80.9 52 69.2
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 8.9e-14 80.5 53 67.9
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 8.9e-14 80.5 52 71.2
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 1.2e-13 80.1 52 69.2
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 1.2e-13 80.1 52 71.2
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 1.5e-13 79.7 53 64.2
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 1.5e-13 79.7 52 69.2
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 2.0e-13 79.3 53 64.2
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.0e-13 79.3 53 64.2
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 2.0e-13 79.3 52 67.3
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 2.0e-13 79.3 52 67.3
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 2.6e-13 79.0 52 69.2
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.6e-13 79.0 53 64.2
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 2.6e-13 79.0 52 69.2
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 2.6e-13 79.0 52 69.2
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 2.6e-13 79.0 52 69.2
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 2.6e-13 79.0 52 67.3
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 3.4e-13 78.6 53 64.2
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 3.4e-13 78.6 52 63.5
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 3.4e-13 78.6 52 65.4
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 4.4e-13 78.2 52 71.2
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 4.4e-13 78.2 52 67.3
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 5.8e-13 77.8 52 65.4
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 5.8e-13 77.8 52 71.2
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 5.8e-13 77.8 52 67.3
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 7.5e-13 77.4 52 65.4
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 7.5e-13 77.4 52 67.3
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 9.8e-13 77.0 52 65.4
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 9.8e-13 77.0 52 63.5
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 9.8e-13 77.0 52 63.5
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 1.3e-12 76.6 52 65.4
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 1.3e-12 76.6 52 71.2
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 1.3e-12 76.6 53 62.3
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 1.7e-12 76.3 52 65.4
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.7e-12 76.3 52 69.2
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 1.7e-12 76.3 51 64.7
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.7e-12 76.3 52 67.3
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 1.7e-12 76.3 52 67.3
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 2.2e-12 75.9 52 65.4
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 2.9e-12 75.5 51 60.8
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 4.9e-12 74.7 52 65.4
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 4.9e-12 74.7 53 64.2
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 4.9e-12 74.7 52 63.5
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 4.9e-12 74.7 52 65.4
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 6.4e-12 74.3 51 60.8
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 6.4e-12 74.3 51 60.8
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 6.4e-12 74.3 51 60.8
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 6.4e-12 74.3 51 60.8
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 6.4e-12 74.3 51 60.8
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 8.3e-12 73.9 52 61.5
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 1.1e-11 73.6 52 61.5
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.1e-11 73.6 52 61.5
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 1.4e-11 73.2 52 67.3
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 1.4e-11 73.2 52 65.4
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 1.4e-11 73.2 52 59.6
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 1.4e-11 73.2 52 65.4
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.9e-11 72.8 52 61.5
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 1.9e-11 72.8 52 61.5
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 2.4e-11 72.4 52 57.7
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 2.4e-11 72.4 52 63.5
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 4.1e-11 71.6 52 57.7
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 4.1e-11 71.6 52 61.5
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 4.1e-11 71.6 51 56.9
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 9.2e-11 70.5 52 59.6
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 1.2e-10 70.1 52 63.5
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 1.2e-10 70.1 52 61.5
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 3.5e-10 68.6 52 57.7
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 1.0e-09 67.0 52 63.5
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 1.0e-09 67.0 52 63.5
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 1.3e-09 66.6 52 59.6
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 1.3e-09 66.6 52 57.7
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 1.3e-09 66.6 52 59.6
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 5.0e-09 64.7 52 57.7
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 6.6e-09 64.3 52 57.7
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 6.6e-09 64.3 52 57.7
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 6.6e-09 64.3 52 55.8
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 6.6e-09 64.3 52 55.8
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 6.6e-09 64.3 52 53.8
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 1.6e-07 59.7 53 49.1
Mapoly0051s0114 Marchantia polymorpha HOM05D052641 ORTHO05D001882 6.2e-07 57.8 75 40.0
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 8.0e-07 57.4 42 59.5
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 3.1e-06 55.5 38 60.5
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 6.8e-06 54.3 50 44.0
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 8.9e-06 53.9 45 51.1


User provided reference genes

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