Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p53570 Brassica napus HOM05D012895 ORTHO05D014428 6.5e-197 690.6 377 100.0
BcaC02g08512 Brassica carinata HOM05D012895 ORTHO05D014428 2.8e-184 648.7 377 94.7
BolC4t26912H Brassica oleracea HOM05D012895 ORTHO05D014428 2.8e-184 648.7 377 94.7
A04p18340 Brassica napus HOM05D012895 ORTHO05D014428 2.2e-168 595.9 377 89.7
BraA04t17445Z Brassica rapa HOM05D012895 ORTHO05D014428 2.2e-168 595.9 377 89.7
BcaB06g27961 Brassica carinata HOM05D012895 ORTHO05D014428 7.1e-119 431.4 335 77.9
Sp4g02940 Schrenkiella parvula HOM05D012895 ORTHO05D014428 4.1e-82 309.3 412 50.0
Thhalv10000536m.g Eutrema salsugineum HOM05D012895 ORTHO05D014428 2.2e-75 287.0 379 49.3
AL4G14080 Arabidopsis lyrata HOM05D012895 ORTHO05D014428 2.4e-58 230.3 456 39.3
AT2G24030 Arabidopsis thaliana HOM05D012895 ORTHO05D014428 1.7e-56 224.2 471 37.6
BcaB06g27960 Brassica carinata HOM05D012895 ORTHO05D014428 1.6e-49 201.1 341 49.6
Carub.0004s0319 Capsella rubella HOM05D012895 ORTHO05D014428 1.8e-45 187.6 460 36.3
CARHR184730 Cardamine hirsuta HOM05D012895 ORTHO05D014428 1.8e-42 177.6 362 37.0
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 9.5e-23 112.1 397 30.5
Eucgr.C00251 Eucalyptus grandis HOM05D003426 ORTHO05D003816 2.1e-14 84.3 363 32.2
Duzib168G0934 Durio zibethinus HOM05D003426 ORTHO05D003816 1.8e-13 81.3 383 27.4
TWI34G0373 Tripterygium wilfordii HOM05D003426 ORTHO05D003816 2.3e-13 80.9 429 28.9
Thecc.09G028500 Theobroma cacao HOM05D003426 ORTHO05D003816 2.6e-12 77.4 397 27.5
Atru.chr7.23 Acer truncatum HOM05D003426 ORTHO05D003816 3.8e-11 73.6 423 30.7
Ca_21135_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 4.9e-11 73.2 404 27.0
Ca_21137_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 4.9e-11 73.2 404 27.0
Glyma.17G072900 Glycine max HOM05D003426 ORTHO05D003816 8.4e-11 72.4 365 25.8
Potri.006G182601 Populus trichocarpa HOM05D003426 ORTHO05D003816 1.4e-10 71.6 412 27.2
arahy.Tifrunner.gnm1.ann1.H6N2T4 Arachis hypogaea HOM05D003426 ORTHO05D003816 1.9e-10 71.2 384 25.3
CiPaw.16G108300 Carya illinoinensis HOM05D003426 ORTHO05D003816 1.9e-10 71.2 270 27.8
Cfa020810 Carpinus fangiana HOM05D003426 ORTHO05D003816 2.4e-10 70.9 423 24.6
Cpa.g.sc46.169 Carica papaya HOM05D003426 ORTHO05D003816 3.2e-10 70.5 396 28.3
Glyma.02G205001 Glycine max HOM05D003426 ORTHO05D003816 5.4e-10 69.7 187 32.6
Hma1.2p1_0028F.1_g017630 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 7.1e-10 69.3 402 25.4
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 1.6e-09 68.2 153 31.4
Lj4g0006994 Lotus japonicus HOM05D003426 ORTHO05D003816 4.6e-09 66.6 364 26.6
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 6.0e-09 66.2 136 33.8
COL.COLO4_18823 Corchorus olitorius HOM05D003426 ORTHO05D003816 7.8e-09 65.9 380 27.9
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 1.0e-08 65.5 151 31.8
Glyma.17G073000 Glycine max HOM05D003426 ORTHO05D003816 6.6e-08 62.8 186 32.3
FAN26G0769 Fragaria x ananassa HOM05D003426 ORTHO05D003816 2.5e-07 60.8 452 29.2
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 4.3e-07 60.1 135 31.9
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 4.3e-07 60.1 138 30.4
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 4.3e-07 60.1 131 32.8
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 7.3e-07 59.3 138 31.9
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 9.6e-07 58.9 133 30.1
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 1.6e-06 58.2 139 32.4
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 2.1e-06 57.8 134 31.3
Cc06_g14810 Coffea canephora HOM05D003426 ORTHO05D003816 2.1e-06 57.8 403 25.6
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 2.1e-06 57.8 145 31.7
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 2.1e-06 57.8 171 28.7
Actinidia23556 Actinidia chinensis HOM05D003426 ORTHO05D003816 2.8e-06 57.4 382 27.0
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 2.8e-06 57.4 156 28.2
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 2.8e-06 57.4 138 31.2
HanXRQChr05g0144001 Helianthus annuus HOM05D003426 ORTHO05D003816 2.8e-06 57.4 334 25.1
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 2.8e-06 57.4 148 33.1
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 3.6e-06 57.0 133 30.1
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 3.6e-06 57.0 145 31.0
Glyma.17G184200 Glycine max HOM05D003426 ORTHO05D003816 4.7e-06 56.6 182 27.5
Lj4g0000658 Lotus japonicus HOM05D003426 ORTHO05D003816 4.7e-06 56.6 354 24.6
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 4.7e-06 56.6 162 29.0
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 6.2e-06 56.2 163 29.4
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 6.2e-06 56.2 137 30.7
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 6.2e-06 56.2 137 29.2
Manes.10G096200 Manihot esculenta HOM05D000650 ORTHO05D014428 6.2e-06 56.2 168 29.8
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 8.1e-06 55.8 140 29.3
Sed0021282 Sechium edule HOM05D003426 ORTHO05D003816 8.1e-06 55.8 217 28.6
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 8.1e-06 55.8 230 25.7
TAR625G0266 Trochodendron aralioides HOM05D000650 ORTHO05D003816 8.1e-06 55.8 136 35.3


User provided reference genes

Program Settings