Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p52430 Brassica napus HOM05D016212 ORTHO05D020173 2.4e-50 201.8 101 100.0
C04p52450 Brassica napus HOM05D016212 ORTHO05D020173 2.4e-50 201.8 101 100.0
C04p52470 Brassica napus HOM05D016212 ORTHO05D020173 2.4e-50 201.8 101 100.0
BolC6t35736H Brassica oleracea HOM05D016212 ORTHO05D020173 4.3e-47 191.0 103 94.2
BraA06t26450Z Brassica rapa HOM05D016212 ORTHO05D020173 2.1e-41 172.2 109 81.7
C05p41030 Brassica napus HOM05D016212 ORTHO05D020173 1.0e-35 153.3 102 79.4
BraA03t15592Z Brassica rapa HOM05D016212 ORTHO05D020173 1.2e-33 146.4 95 80.0
Sp1g07440 Schrenkiella parvula HOM05D000851 ORTHO05D003023 1.1e-10 70.1 49 77.6
A06p05700 Brassica napus HOM05D000851 ORTHO05D003023 4.2e-10 68.2 49 75.5
C05p06870 Brassica napus HOM05D000851 ORTHO05D003023 4.2e-10 68.2 49 75.5
BolC5t29446H Brassica oleracea HOM05D000851 ORTHO05D003023 4.2e-10 68.2 49 75.5
BraA06t23780Z Brassica rapa HOM05D000851 ORTHO05D003023 4.2e-10 68.2 49 75.5
Aa31sc20G20 Aethionema arabicum HOM05D000851 ORTHO05D003023 1.2e-09 66.6 49 71.4
AL1G19230 Arabidopsis lyrata HOM05D000851 ORTHO05D003023 1.2e-09 66.6 49 73.5
AT1G08800 Arabidopsis thaliana HOM05D000851 ORTHO05D003023 1.6e-09 66.2 49 73.5
Carub.0001s0814 Capsella rubella HOM05D000851 ORTHO05D003023 2.1e-09 65.9 49 73.5
THA.LOC104805830 Tarenaya hassleriana HOM05D000851 ORTHO05D003023 2.7e-09 65.5 49 69.4
BcaC07g38458 Brassica carinata HOM05D000851 ORTHO05D015448 6.1e-09 64.3 48 75.0
C08p12300 Brassica napus HOM05D000851 ORTHO05D003023 6.1e-09 64.3 48 75.0
BolC8t48870H Brassica oleracea HOM05D000851 ORTHO05D003023 6.1e-09 64.3 48 75.0
BraA08t35407Z Brassica rapa HOM05D000851 ORTHO05D003023 6.1e-09 64.3 48 75.0
A08p34960 Brassica napus HOM05D000851 ORTHO05D003023 8.0e-09 63.9 48 75.0
BcaNung06269 Brassica carinata HOM05D000851 ORTHO05D003023 1.8e-08 62.8 48 72.9
Cpa.g.sc162.2 Carica papaya HOM05D000851 ORTHO05D003023 1.8e-08 62.8 49 69.4
THA.LOC104808028 Tarenaya hassleriana HOM05D000851 ORTHO05D003023 2.3e-08 62.4 49 67.3
CARHR008720 Cardamine hirsuta HOM05D000851 ORTHO05D003023 3.0e-08 62.0 49 69.4
CANSAT54G2416 Cannabis sativa HOM05D000851 ORTHO05D003023 8.8e-08 60.5 75 46.7
Nitab4.5_0002247g0120 Nicotiana tabacum HOM05D000851 ORTHO05D003023 1.1e-07 60.1 72 45.8
Peaxi162Scf00647g00013 Petunia axillaris HOM05D000851 ORTHO05D003023 1.1e-07 60.1 75 45.3
Solyc01g097040.4 Solanum lycopersicum HOM05D000851 ORTHO05D003023 1.5e-07 59.7 65 50.8
Sopen01g040730 Solanum pennellii HOM05D000851 ORTHO05D003023 1.5e-07 59.7 65 50.8
PGSC0003DMG400027519 Solanum tuberosum HOM05D000851 ORTHO05D003023 1.5e-07 59.7 65 50.8
CSS0025464 Camellia sinensis var. sinensis HOM05D000851 ORTHO05D003023 2.0e-07 59.3 68 50.0
CAN.G134.63 Capsicum annuum HOM05D000851 ORTHO05D003023 2.6e-07 58.9 64 53.1
Nitab4.5_0011211g0010 Nicotiana tabacum HOM05D000851 ORTHO05D003023 2.6e-07 58.9 63 52.4
vmacro13805 Vaccinium macrocarpon HOM05D000851 ORTHO05D003023 3.3e-07 58.5 68 50.0
Sabra13G0039700 Salix brachista HOM05D000851 ORTHO05D003023 4.4e-07 58.2 46 65.2
SGA_v2.0_scaffold172G38978 Striga asiatica HOM05D000851 ORTHO05D003023 4.4e-07 58.2 76 46.1
A03p65400 Brassica napus HOM05D016212 ORTHO05D097725 5.7e-07 57.8 85 44.7
Potri.013G043400 Populus trichocarpa HOM05D000851 ORTHO05D003023 5.7e-07 57.8 71 47.9
Manes.09G150400 Manihot esculenta HOM05D000851 ORTHO05D003023 7.5e-07 57.4 71 46.5
Ciclev10027718m.g Citrus clementina HOM05D000851 ORTHO05D003023 9.7e-07 57.0 47 59.6
Potri.019G012200 Populus trichocarpa HOM05D000851 ORTHO05D003023 9.7e-07 57.0 48 62.5
Actinidia17464 Actinidia chinensis HOM05D000851 ORTHO05D003023 1.3e-06 56.6 71 46.5
Cc02_g30970 Coffea canephora HOM05D000851 ORTHO05D003023 1.3e-06 56.6 80 40.0
Dinv05261 Davidia involucrata HOM05D000851 ORTHO05D003023 1.3e-06 56.6 71 46.5
Lj1g0008175 Lotus japonicus HOM05D000851 ORTHO05D003023 1.3e-06 56.6 68 48.5
Duzib128G1462 Durio zibethinus HOM05D000851 ORTHO05D003023 1.7e-06 56.2 71 47.9
Gohir.D11G260600 Gossypium hirsutum HOM05D000851 ORTHO05D003023 1.7e-06 56.2 54 61.1
Gorai.007G279100 Gossypium raimondii HOM05D000851 ORTHO05D003023 1.7e-06 56.2 54 61.1
Prupe.6G346700 Prunus persica HOM05D000851 ORTHO05D003023 1.7e-06 56.2 71 46.5
arahy.Tifrunner.gnm1.ann1.FLY1RE Arachis hypogaea HOM05D000851 ORTHO05D003023 2.2e-06 55.8 48 62.5
Gohir.A11G250100 Gossypium hirsutum HOM05D000851 ORTHO05D003023 2.2e-06 55.8 57 59.6
Manes.08G136800 Manihot esculenta HOM05D000851 ORTHO05D003023 2.2e-06 55.8 68 51.5
Rhsim07G0073600 Rhododendron simsii HOM05D000851 ORTHO05D003023 2.2e-06 55.8 68 47.1
arahy.Tifrunner.gnm1.ann1.DCE16H Arachis hypogaea HOM05D000851 ORTHO05D003023 2.8e-06 55.5 48 62.5
Ca_09433_v3 Cicer arietinum L. HOM05D000851 ORTHO05D003023 2.8e-06 55.5 48 62.5
FvH4_6g02500 Fragaria vesca HOM05D000851 ORTHO05D003023 2.8e-06 55.5 67 47.8
FAN02G3896 Fragaria x ananassa HOM05D000851 ORTHO05D003023 2.8e-06 55.5 67 47.8
FAN09G3454 Fragaria x ananassa HOM05D000851 ORTHO05D003023 2.8e-06 55.5 67 47.8
FAN14G2146 Fragaria x ananassa HOM05D000851 ORTHO05D003023 2.8e-06 55.5 67 47.8
FAN14G3846 Fragaria x ananassa HOM05D000851 ORTHO05D003023 2.8e-06 55.5 67 47.8
Glyma.03G248800 Glycine max HOM05D000851 ORTHO05D003023 2.8e-06 55.5 48 62.5
Glyma.19G246400 Glycine max HOM05D000851 ORTHO05D003023 2.8e-06 55.5 48 62.5
Lj7A491T46 Lonicera japonica HOM05D000851 ORTHO05D003023 2.8e-06 55.5 49 59.2
Phvul.006G103500 Phaseolus vulgaris HOM05D000851 ORTHO05D003023 2.8e-06 55.5 48 62.5
RcHm_v2.0_Chr3g0450371 Rosa chinensis HOM05D000851 ORTHO05D003023 2.8e-06 55.5 45 62.2
VMungo0540G0971 Vigna mungo HOM05D000851 ORTHO05D003023 2.8e-06 55.5 48 62.5
DCAR_000363 Daucus carota HOM05D000851 ORTHO05D003023 3.7e-06 55.1 74 48.6
DCAR_006635 Daucus carota HOM05D000851 ORTHO05D003023 3.7e-06 55.1 74 48.6
SalBow8G2324 Salvia bowleyana HOM05D000851 ORTHO05D003023 3.7e-06 55.1 72 44.4
Thecc.05G277800 Theobroma cacao HOM05D000851 ORTHO05D003023 3.7e-06 55.1 48 62.5
FAN05G0024 Fragaria x ananassa HOM05D000851 ORTHO05D003023 4.8e-06 54.7 78 44.9
FAN05G1063 Fragaria x ananassa HOM05D000851 ORTHO05D003023 4.8e-06 54.7 78 44.9
Lalb_Chr04g0262191 Lupinus albus HOM05D000851 ORTHO05D003023 4.8e-06 54.7 48 60.4
Medtr7g115350 Medicago truncatula HOM05D000851 ORTHO05D003023 4.8e-06 54.7 48 60.4
TPR.G6980 Trifolium pratense HOM05D000851 ORTHO05D003023 4.8e-06 54.7 48 60.4
MELO3C014398.2 Cucumis melo HOM05D000851 ORTHO05D003023 6.3e-06 54.3 55 54.5
Psat3g187960 Pisum sativum HOM05D000851 ORTHO05D003023 6.3e-06 54.3 48 60.4
Sabra19G0017500 Salix brachista HOM05D000851 ORTHO05D003023 6.3e-06 54.3 48 58.3
Sabra19G0024800 Salix brachista HOM05D000851 ORTHO05D003023 6.3e-06 54.3 48 58.3
ECA236G2927 Erigeron canadensis HOM05D000851 ORTHO05D003023 8.2e-06 53.9 49 57.1
MD12G1244200 Malus domestica HOM05D000851 ORTHO05D003023 8.2e-06 53.9 48 58.3
PGR142G1822 Punica granatum HOM05D000851 ORTHO05D003023 8.2e-06 53.9 48 62.5
GSVIVG01036252001 Vitis vinifera HOM05D000851 ORTHO05D003023 8.2e-06 53.9 77 42.9


User provided reference genes

Program Settings