Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p51520 Brassica napus HOM05D000916 ORTHO05D011795 2.7e-79 298.5 144 100.0
BolC9t56071H Brassica oleracea HOM05D000916 ORTHO05D011795 1.2e-55 219.9 108 96.3
BolC3t18010H Brassica oleracea HOM05D000916 ORTHO05D011795 1.6e-55 219.5 108 96.3
BolC9t55962H Brassica oleracea HOM05D000916 ORTHO05D011795 2.1e-55 219.2 114 92.1
C03p57340 Brassica napus HOM05D000916 ORTHO05D011795 2.8e-55 218.8 107 97.2
C07p62980 Brassica napus HOM05D000916 ORTHO05D011795 2.8e-55 218.8 114 92.1
BolC7t46709H Brassica oleracea HOM05D000916 ORTHO05D011795 2.8e-55 218.8 114 92.1
C02p41330 Brassica napus HOM05D000916 ORTHO05D011795 1.0e-54 216.9 118 90.7
C09p31030 Brassica napus HOM05D000916 ORTHO05D011795 5.2e-54 214.5 118 89.0
BcaC02g08704 Brassica carinata HOM05D000916 ORTHO05D011795 5.4e-51 204.5 108 92.6
BcaC04g21401 Brassica carinata HOM05D000916 ORTHO05D011795 2.7e-50 202.2 114 86.8
A04p07570 Brassica napus HOM05D000916 ORTHO05D011795 1.3e-49 199.9 115 86.1
C09p35340 Brassica napus HOM05D000916 ORTHO05D011795 6.6e-49 197.6 124 81.5
BolC9t56376H Brassica oleracea HOM05D000916 ORTHO05D011795 6.6e-49 197.6 124 81.5
BcaC04g21504 Brassica carinata HOM05D000916 ORTHO05D011795 5.6e-48 194.5 108 88.0
BolC8t48497H Brassica oleracea HOM05D000916 ORTHO05D011795 6.2e-47 191.0 93 94.6
C05p09190 Brassica napus HOM05D000916 ORTHO05D011795 4.4e-45 184.9 114 79.8
BcaC01g02997 Brassica carinata HOM05D000916 ORTHO05D011795 2.4e-43 179.1 105 83.8
BcaB08g36567 Brassica carinata HOM05D000916 ORTHO05D008653 1.7e-41 172.9 110 75.5
BcaC04g19381 Brassica carinata HOM05D000916 ORTHO05D008653 2.5e-40 169.1 110 73.6
A03p66130 Brassica napus HOM05D000916 ORTHO05D008653 2.5e-40 169.1 110 73.6
A10p19910 Brassica napus HOM05D000916 ORTHO05D008653 2.5e-40 169.1 110 73.6
C09p56310 Brassica napus HOM05D000916 ORTHO05D008653 2.5e-40 169.1 110 73.6
BolC9t58500H Brassica oleracea HOM05D000916 ORTHO05D008653 2.5e-40 169.1 110 73.6
BraA03t15665Z Brassica rapa HOM05D000916 ORTHO05D008653 2.5e-40 169.1 110 73.6
BraA10t44066Z Brassica rapa HOM05D000916 ORTHO05D008653 2.5e-40 169.1 110 73.6
Sp6g24550 Schrenkiella parvula HOM05D000916 ORTHO05D008653 2.1e-39 166.0 110 71.8
Thhalv10013775m.g Eutrema salsugineum HOM05D000916 ORTHO05D008653 1.4e-38 163.3 111 73.0
Carub.0006s1820 Capsella rubella HOM05D000916 ORTHO05D008653 1.1e-35 153.7 98 73.5
AT5G19850 Arabidopsis thaliana HOM05D000916 ORTHO05D008653 1.9e-35 152.9 98 73.5
CARHR193030 Cardamine hirsuta HOM05D000916 ORTHO05D008653 9.2e-35 150.6 98 72.4
AL6G31370 Arabidopsis lyrata HOM05D000916 ORTHO05D008653 3.5e-34 148.7 98 71.4
Medtr5g056200 Medicago truncatula HOM05D000916 ORTHO05D008653 4.6e-34 148.3 109 61.5
Actinidia30433 Actinidia chinensis HOM05D000916 ORTHO05D008653 1.7e-33 146.4 109 61.5
Cpa.g.sc119.56 Carica papaya HOM05D000916 ORTHO05D008653 1.7e-33 146.4 100 64.0
Prupe.6G143300 Prunus persica HOM05D000916 ORTHO05D008653 1.7e-33 146.4 127 54.3
THA.LOC104811067 Tarenaya hassleriana HOM05D000916 ORTHO05D008653 5.1e-33 144.8 105 65.7
Ca_13814_v3 Cicer arietinum L. HOM05D000916 ORTHO05D008653 6.6e-33 144.4 106 59.4
Nitab4.5_0000978g0180 Nicotiana tabacum HOM05D000916 ORTHO05D008653 6.6e-33 144.4 99 66.7
Psat2g088040 Pisum sativum HOM05D000916 ORTHO05D008653 6.6e-33 144.4 103 61.2
Solyc12g098660.3 Solanum lycopersicum HOM05D000916 ORTHO05D008653 6.6e-33 144.4 99 66.7
Aa31LG9G12530 Aethionema arabicum HOM05D000916 ORTHO05D008653 8.6e-33 144.1 99 65.7
Ciclev10015550m.g Citrus clementina HOM05D000916 ORTHO05D008653 8.6e-33 144.1 99 64.6
TPR.G38291 Trifolium pratense HOM05D000916 ORTHO05D008653 8.6e-33 144.1 104 60.6
Hund21633 Selenicereus undatus HOM05D000916 ORTHO05D008653 1.1e-32 143.7 106 60.4
Lj2g0000465 Lotus japonicus HOM05D000916 ORTHO05D008653 1.5e-32 143.3 103 61.2
Sopen12g033410 Solanum pennellii HOM05D000916 ORTHO05D008653 1.5e-32 143.3 99 65.7
CANSAT54G1745 Cannabis sativa HOM05D000916 ORTHO05D008653 1.9e-32 142.9 104 61.5
CSS0001504 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D008653 2.5e-32 142.5 106 60.4
FAN25G1294 Fragaria x ananassa HOM05D000916 ORTHO05D008653 2.5e-32 142.5 106 59.4
RcHm_v2.0_Chr5g0083221 Rosa chinensis HOM05D000916 ORTHO05D008653 2.5e-32 142.5 106 59.4
GSVIVG01025450001 Vitis vinifera HOM05D000916 ORTHO05D008653 2.5e-32 142.5 127 52.8
Cfa009571 Carpinus fangiana HOM05D000916 ORTHO05D008653 3.3e-32 142.1 110 57.3
Duzib168G0456 Durio zibethinus HOM05D000916 ORTHO05D008653 3.3e-32 142.1 101 62.4
Gorai.013G244300 Gossypium raimondii HOM05D000916 ORTHO05D008653 3.3e-32 142.1 101 63.4
Nitab4.5_0004758g0020 Nicotiana tabacum HOM05D000916 ORTHO05D008653 3.3e-32 142.1 99 65.7
Oeu000521.1 Olea europaea HOM05D000284 ORTHO05D000805 3.3e-32 142.1 106 61.3
PGSC0003DMG402004581 Solanum tuberosum HOM05D000916 ORTHO05D008653 3.3e-32 142.1 99 65.7
Thecc.09G208000 Theobroma cacao HOM05D000916 ORTHO05D008653 3.3e-32 142.1 110 60.0
CiPaw.14G135800 Carya illinoinensis HOM05D000916 ORTHO05D008653 4.3e-32 141.7 110 58.2
ECA248G2975 Erigeron canadensis HOM05D000916 ORTHO05D008653 4.3e-32 141.7 120 56.7
MD11G1007800 Malus domestica HOM05D000916 ORTHO05D008653 4.3e-32 141.7 120 55.8
Rhsim01G0184600 Rhododendron simsii HOM05D000916 ORTHO05D008653 4.3e-32 141.7 106 59.4
CSS0014256 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D008653 5.6e-32 141.4 104 61.5
COL.COLO4_35043 Corchorus olitorius HOM05D000916 ORTHO05D008653 5.6e-32 141.4 101 63.4
Lj1A524T16 Lonicera japonica HOM05D000916 ORTHO05D008653 5.6e-32 141.4 106 62.3
Cc03_g10030 Coffea canephora HOM05D000916 ORTHO05D008653 7.3e-32 141.0 107 62.6
FvH4_3g45410 Fragaria vesca HOM05D000916 ORTHO05D008653 7.3e-32 141.0 106 58.5
FAN11G2367 Fragaria x ananassa HOM05D000916 ORTHO05D008653 7.3e-32 141.0 106 58.5
FAN21G1400 Fragaria x ananassa HOM05D000916 ORTHO05D008653 7.3e-32 141.0 106 58.5
Glyma.18G000300 Glycine max HOM05D000916 ORTHO05D008653 7.3e-32 141.0 104 59.6
Eucgr.B03607 Eucalyptus grandis HOM05D000916 ORTHO05D008653 1.2e-31 140.2 104 60.6
MBI04_g09718_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D008653 1.2e-31 140.2 107 58.9
Os07g0575800 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D008653 1.6e-31 139.8 99 62.6
arahy.Tifrunner.gnm1.ann1.SDBE87 Arachis hypogaea HOM05D000916 ORTHO05D008653 2.1e-31 139.4 101 62.4
FAN16G2348 Fragaria x ananassa HOM05D000916 ORTHO05D008653 2.1e-31 139.4 106 58.5
Prupe.6G005000 Prunus persica HOM05D000916 ORTHO05D008653 2.1e-31 139.4 127 52.0
CAN.G767.1 Capsicum annuum HOM05D000916 ORTHO05D008653 2.8e-31 139.0 99 63.6
Gohir.A13G210000 Gossypium hirsutum HOM05D000916 ORTHO05D008653 2.8e-31 139.0 101 62.4
Nn7g35884 Nelumbo nucifera HOM05D000916 ORTHO05D008653 2.8e-31 139.0 120 53.3
Atru.chr3.2085 Acer truncatum HOM05D000916 ORTHO05D008653 3.6e-31 138.7 99 62.6
AUR62019171 Chenopodium quinoa HOM05D000916 ORTHO05D008653 4.7e-31 138.3 103 61.2
PSO339G1413 Papaver somniferum HOM05D000916 ORTHO05D008653 4.7e-31 138.3 104 60.6
PSO384G1579 Papaver somniferum HOM05D000916 ORTHO05D008653 4.7e-31 138.3 104 60.6
VMungo1383G0463 Vigna mungo HOM05D000916 ORTHO05D008653 4.7e-31 138.3 102 59.8
Ah.04g161500 Amaranthus hybridus HOM05D001490 ORTHO05D008653 6.2e-31 137.9 116 56.9
HanXRQChr11g0344701 Helianthus annuus HOM05D000916 ORTHO05D008653 6.2e-31 137.9 99 62.6
QL01p008693 Quercus lobata HOM05D000916 ORTHO05D008653 8.1e-31 137.5 104 57.7
HPP92_001606 Vanilla planifolia HOM05D000916 ORTHO05D008653 8.1e-31 137.5 104 58.7
arahy.Tifrunner.gnm1.ann1.9H9I7P Arachis hypogaea HOM05D000916 ORTHO05D008653 1.1e-30 137.1 101 61.4
TWI32G0708 Tripterygium wilfordii HOM05D000916 ORTHO05D008653 1.1e-30 137.1 110 56.4
EL10Ac4g10376 Beta vulgaris HOM05D000916 ORTHO05D008653 1.4e-30 136.7 99 61.6
Zm00001eb325320 Zea mays HOM05D000916 ORTHO05D008653 1.4e-30 136.7 99 61.6
Lalb_Chr01g0009441 Lupinus albus HOM05D000916 ORTHO05D008653 1.8e-30 136.3 103 58.3
Potri.003G219700 Populus trichocarpa HOM05D000916 ORTHO05D008653 1.8e-30 136.3 99 61.6
TAR633G1643 Trochodendron aralioides HOM05D000916 ORTHO05D008653 4.0e-30 135.2 127 53.5
Pp3c19_19860 Physcomitrium patens HOM05D000916 ORTHO05D008653 5.2e-30 134.8 99 61.6
Lsat_1_v5_gn_1_67460 Lactuca sativa HOM05D000916 ORTHO05D008653 6.8e-30 134.4 94 62.8
Manes.15G108100 Manihot esculenta HOM05D000916 ORTHO05D008653 6.8e-30 134.4 106 55.7
ATR0737G073 Amborella trichopoda HOM05D000916 ORTHO05D008653 8.9e-30 134.0 105 57.1
MELO3C014720.2 Cucumis melo HOM05D000916 ORTHO05D008653 8.9e-30 134.0 102 55.9
Aqoxy2G00552 Aquilegia oxysepala HOM05D000916 ORTHO05D008653 1.2e-29 133.7 107 57.0
Migut.G01135 Erythranthe guttata HOM05D000916 ORTHO05D008653 1.2e-29 133.7 101 60.4
AUR62000001 Chenopodium quinoa HOM05D000916 ORTHO05D008653 1.5e-29 133.3 124 50.8
Sc06g0004240 Simmondsia chinensis HOM05D000916 ORTHO05D008653 2.0e-29 132.9 99 59.6
ClCG02G024330 Citrullus lanatus HOM05D000916 ORTHO05D008653 2.6e-29 132.5 99 56.6
CsaV3_4G017470 Cucumis sativus L. HOM05D000916 ORTHO05D008653 5.8e-29 131.3 99 56.6
CDE10G1189 Ceratophyllum demersum HOM05D000916 ORTHO05D008653 9.9e-29 130.6 128 49.2
Sed0003044 Sechium edule HOM05D000916 ORTHO05D008653 9.9e-29 130.6 110 50.9
SalBow2G3623 Salvia bowleyana HOM05D000916 ORTHO05D008653 1.3e-28 130.2 103 58.3
MSTRG.4278 Avicennia marina HOM05D000916 ORTHO05D008653 2.9e-28 129.0 125 51.2
SEGI_04744 Sequoiadendron giganteum HOM05D000916 ORTHO05D008653 4.9e-28 128.3 99 56.6
C02p27510 Brassica napus HOM05D000916 ORTHO05D011795 1.2e-26 123.6 60 98.3
CBR_g44394 Chara braunii HOM05D000916 ORTHO05D008653 3.5e-26 122.1 99 52.5
SMO304G0056 Selaginella moellendorffii HOM05D000916 ORTHO05D008653 5.1e-25 118.2 104 52.9
Sc06g0004190 Simmondsia chinensis HOM05D000916 ORTHO05D008653 1.2e-23 113.6 81 59.3
Sabra03G0163600 Salix brachista HOM05D000916 ORTHO05D008653 1.6e-23 113.2 81 58.0
Peaxi162Scf00378g00518 Petunia axillaris HOM05D000916 ORTHO05D008653 4.7e-23 111.7 99 56.6
unitig_0.g2425 Utricularia gibba HOM05D000916 ORTHO05D008653 4.0e-22 108.6 85 55.3
MCO05G282 Micromonas commoda HOM05D000916 ORTHO05D008653 9.9e-21 104.0 97 48.5
BcaC07g38084 Brassica carinata HOM05D000353 ORTHO05D000174 2.2e-20 102.8 92 55.4
Gorai.013G247100 Gossypium raimondii HOM05D000916 ORTHO05D011795 2.9e-20 102.4 65 69.2
Dinv13456 Davidia involucrata HOM05D000916 ORTHO05D011795 8.4e-20 100.9 65 67.7
BcaNung03392 Brassica carinata HOM05D000916 ORTHO05D011795 1.9e-19 99.8 60 83.3
Gohir.D13G216666 Gossypium hirsutum HOM05D000916 ORTHO05D011795 7.1e-19 97.8 65 64.6
BolC3t19869H Brassica oleracea HOM05D000916 ORTHO05D011795 2.1e-18 96.3 115 53.0
Cre12.g558550 Chlamydomonas reinhardtii HOM05D000916 ORTHO05D008653 3.0e-17 92.4 101 47.5
A01p24560 Brassica napus HOM05D000916 ORTHO05D011795 6.6e-17 91.3 105 52.4
BcaC01g00131 Brassica carinata HOM05D000916 ORTHO05D011795 9.6e-16 87.4 105 51.4
PRCOL_00001611 Prasinoderma coloniale HOM05D000916 ORTHO05D008653 2.0e-13 79.7 124 37.9
Hma1.2p1_0843F.1_g227380 Hydrangea macrophylla HOM05D000916 ORTHO05D008653 5.4e-11 71.6 101 39.6
Haze_22951 Corylus avellana HOM05D000916 ORTHO05D008653 3.5e-10 68.9 94 40.4
SGA_v2.0_scaffold17G08041 Striga asiatica HOM05D000916 ORTHO05D008653 3.5e-10 68.9 100 39.0
Gorai.003G126100 Gossypium raimondii HOM05D000916 ORTHO05D011795 3.3e-08 62.4 57 49.1
AagrBONN_evm.TU.Sc2ySwM_344.3663 Anthoceros agrestis HOM05D000916 ORTHO05D007921 4.3e-08 62.0 93 36.6
Gohir.D03G119666 Gossypium hirsutum HOM05D000916 ORTHO05D011795 4.3e-08 62.0 57 49.1
Gorai.013G244100 Gossypium raimondii HOM05D000916 ORTHO05D008653 7.4e-08 61.2 35 74.3
CBR_g23820 Chara braunii HOM05D000916 ORTHO05D007921 6.2e-07 58.2 78 38.5
SalBow7G2842 Salvia bowleyana HOM05D000916 ORTHO05D007921 6.2e-07 58.2 93 35.5
Mapoly0012s0184 Marchantia polymorpha HOM05D000916 ORTHO05D026700 1.4e-06 57.0 92 32.6
BraA04t16346Z Brassica rapa HOM05D000916 ORTHO05D024689 2.4e-06 56.2 38 73.7
CDE07G1353 Ceratophyllum demersum HOM05D000916 ORTHO05D007921 3.1e-06 55.8 93 32.3
Pp3c9_30 Physcomitrium patens HOM05D000916 ORTHO05D007921 3.1e-06 55.8 94 33.0
Lsat_1_v5_gn_4_131361 Lactuca sativa HOM05D000916 ORTHO05D007921 5.3e-06 55.1 120 28.3
Pp3c8_3230 Physcomitrium patens HOM05D000916 ORTHO05D026700 6.9e-06 54.7 53 41.5
Ciclev10021411m.g Citrus clementina HOM05D000916 ORTHO05D007921 9.0e-06 54.3 134 27.6


User provided reference genes

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