Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p51340 Brassica napus HOM05D005503 ORTHO05D007451 4.8e-160 567.8 285 100.0
BcaC02g08721 Brassica carinata HOM05D005503 ORTHO05D007451 5.1e-154 547.7 286 96.9
BolC4t26724H Brassica oleracea HOM05D005503 ORTHO05D007451 3.8e-149 531.6 284 94.7
C08p39580 Brassica napus HOM05D005503 ORTHO05D007451 7.2e-124 447.6 284 80.6
BcaC07g40964 Brassica carinata HOM05D005503 ORTHO05D007451 3.0e-122 442.2 284 79.6
A09p56430 Brassica napus HOM05D005503 ORTHO05D007451 8.8e-122 440.7 284 79.2
BraA09t41037Z Brassica rapa HOM05D005503 ORTHO05D007451 8.8e-122 440.7 284 79.2
A09p56630 Brassica napus HOM05D005503 ORTHO05D007451 2.0e-121 439.5 279 79.6
BraA09t41054Z Brassica rapa HOM05D005503 ORTHO05D007451 2.0e-121 439.5 279 79.6
BcaC07g40948 Brassica carinata HOM05D005503 ORTHO05D007451 5.9e-118 427.9 284 78.5
BolC8t51514H Brassica oleracea HOM05D005503 ORTHO05D007451 5.9e-118 427.9 284 78.5
C08p39400 Brassica napus HOM05D005503 ORTHO05D007451 1.9e-116 422.9 284 76.8
Sp6g38750 Schrenkiella parvula HOM05D005503 ORTHO05D007451 3.7e-112 408.7 284 74.6
Thhalv10015674m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 7.0e-103 377.9 290 70.0
Thhalv10027188m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 7.8e-102 374.4 287 70.0
BraA10t45255Z Brassica rapa HOM05D005503 ORTHO05D008949 2.5e-100 369.4 280 70.4
C09p72840 Brassica napus HOM05D005503 ORTHO05D008949 2.1e-99 366.3 278 70.5
BolC9t60020H Brassica oleracea HOM05D005503 ORTHO05D008949 2.1e-99 366.3 278 70.5
Thhalv10015413m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 4.7e-99 365.2 289 67.8
A10p32120 Brassica napus HOM05D005503 ORTHO05D008949 6.8e-98 361.3 280 70.0
Thhalv10027472m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 9.2e-95 350.9 287 66.6
BcaC06g32102 Brassica carinata HOM05D005503 ORTHO05D008949 3.6e-91 339.0 279 66.7
Thhalv10023018m.g Eutrema salsugineum HOM05D005503 ORTHO05D007451 2.2e-88 329.7 249 69.1
BolC8t51531H Brassica oleracea HOM05D005503 ORTHO05D007451 4.1e-87 325.5 218 77.5
AL6G13600 Arabidopsis lyrata HOM05D005503 ORTHO05D007451 1.9e-71 273.5 283 51.6
AT5G04010 Arabidopsis thaliana HOM05D005503 ORTHO05D007451 2.7e-70 269.6 278 52.5
Carub.0006s0294 Capsella rubella HOM05D005503 ORTHO05D007451 1.2e-65 254.2 295 50.5
CARHR209270 Cardamine hirsuta HOM05D005503 ORTHO05D007451 1.6e-62 243.8 264 48.9
Aa31LG6G5380 Aethionema arabicum HOM05D005503 ORTHO05D007451 3.4e-49 199.5 254 47.6
Aa31LG6G5360 Aethionema arabicum HOM05D005503 ORTHO05D007451 3.9e-29 132.9 257 40.5
THA.LOC104816403 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 3.7e-27 126.3 248 37.1
THA.LOC104825175 Tarenaya hassleriana HOM05D007529 ORTHO05D007451 1.2e-22 111.3 234 32.9
Lalb_Chr02g0156441 Lupinus albus HOM05D007529 ORTHO05D007451 1.4e-21 107.8 257 29.6
QL07p004579 Quercus lobata HOM05D007529 ORTHO05D007451 2.0e-20 104.0 249 30.5
CANSAT80G2089 Cannabis sativa HOM05D007529 ORTHO05D007451 1.3e-19 101.3 242 31.4
CANSAT80G1192 Cannabis sativa HOM05D007529 ORTHO05D007451 2.8e-19 100.1 242 31.4
Prupe.7G049500 Prunus persica HOM05D007529 ORTHO05D007451 1.1e-18 98.2 246 30.1
Nn2g15054 Nelumbo nucifera HOM05D007529 ORTHO05D007451 1.4e-18 97.8 251 30.7
MD14G1081300 Malus domestica HOM05D007529 ORTHO05D007451 9.1e-18 95.1 242 29.3
Atru.chr1.1251 Acer truncatum HOM05D007529 ORTHO05D007451 5.9e-17 92.4 248 27.8
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 2.9e-16 90.1 244 28.3
FAN22G0851 Fragaria x ananassa HOM05D007529 ORTHO05D007451 2.9e-16 90.1 178 32.6
Gorai.002G227400 Gossypium raimondii HOM05D007529 ORTHO05D007451 2.9e-16 90.1 235 28.1
Glyma.02G191900 Glycine max HOM05D007529 ORTHO05D007451 3.8e-16 89.7 247 27.5
RcHm_v2.0_Chr3g0484581 Rosa chinensis HOM05D007529 ORTHO05D007451 3.8e-16 89.7 242 28.9
Sed0023165 Sechium edule HOM05D007529 ORTHO05D007451 3.8e-16 89.7 260 28.1
VMungo0720G2145 Vigna mungo HOM05D007529 ORTHO05D007451 6.5e-16 89.0 242 29.8
Gohir.D01G183900 Gossypium hirsutum HOM05D007529 ORTHO05D007451 8.5e-16 88.6 242 29.3
Gohir.A01G193700 Gossypium hirsutum HOM05D007529 ORTHO05D007451 1.1e-15 88.2 238 28.2
Medtr1g041810 Medicago truncatula HOM05D007529 ORTHO05D007451 1.5e-15 87.8 254 29.9
Phvul.007G249000 Phaseolus vulgaris HOM05D007529 ORTHO05D007451 3.2e-15 86.7 154 35.7
FAN07G2804 Fragaria x ananassa HOM05D007529 ORTHO05D007451 5.5e-15 85.9 178 31.5
Lsat_1_v5_gn_5_161020 Lactuca sativa HOM05D007529 ORTHO05D007451 7.2e-15 85.5 244 29.9
TWI74G0965 Tripterygium wilfordii HOM05D007529 ORTHO05D007451 9.4e-15 85.1 250 29.2
FvH4_4g15570 Fragaria vesca HOM05D007529 ORTHO05D007451 1.2e-14 84.7 178 29.8
FAN22G0252 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.2e-14 84.7 178 30.3
Nitab4.5_0011420g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 1.2e-14 84.7 257 26.8
Ca_23805_v3 Cicer arietinum L. HOM05D007529 ORTHO05D007451 1.6e-14 84.3 250 30.0
Ah.13g076730 Amaranthus hybridus HOM05D007529 ORTHO05D007451 2.1e-14 84.0 246 27.6
FvH4_4g15460 Fragaria vesca HOM05D007529 ORTHO05D007451 2.1e-14 84.0 178 30.9
MBI19_g17527_MAGBIO Magnolia biondii HOM05D007529 ORTHO05D007451 2.1e-14 84.0 244 29.5
FAN12G3128 Fragaria x ananassa HOM05D007529 ORTHO05D007451 4.7e-14 82.8 178 30.9
ECA248G1753 Erigeron canadensis HOM05D007529 ORTHO05D007451 8.0e-14 82.0 244 27.5
FvH4_6g24810 Fragaria vesca HOM05D007529 ORTHO05D007451 8.0e-14 82.0 247 27.1
COL.COLO4_30902 Corchorus olitorius HOM05D007529 ORTHO05D007451 1.0e-13 81.6 259 26.3
Nitab4.5_0001618g0110 Nicotiana tabacum HOM05D007529 ORTHO05D007451 1.0e-13 81.6 247 27.9
Migut.K00115 Erythranthe guttata HOM05D007529 ORTHO05D007451 1.4e-13 81.3 254 27.2
Cfa016748 Carpinus fangiana HOM05D002613 ORTHO05D003140 2.3e-13 80.5 202 28.2
FAN17G0712 Fragaria x ananassa HOM05D007529 ORTHO05D007451 2.3e-13 80.5 178 30.3
Potri.006G044801 Populus trichocarpa HOM05D007529 ORTHO05D007451 2.3e-13 80.5 252 26.2
Haze_19755 Corylus avellana HOM05D007529 ORTHO05D007451 3.0e-13 80.1 181 29.3
Potri.004G076800 Populus trichocarpa HOM05D007529 ORTHO05D007451 3.0e-13 80.1 260 26.2
PGR142G2784 Punica granatum HOM05D007529 ORTHO05D007451 3.0e-13 80.1 256 27.7
TPR.G19652 Trifolium pratense HOM05D007529 ORTHO05D007451 3.0e-13 80.1 263 29.7
ClCG04G003960 Citrullus lanatus HOM05D007529 ORTHO05D007451 6.8e-13 79.0 267 26.2
CsaV3_4G021910 Cucumis sativus L. HOM05D007529 ORTHO05D007451 6.8e-13 79.0 269 23.4
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 8.8e-13 78.6 184 32.1
Manes.09G016600 Manihot esculenta HOM05D007529 ORTHO05D007451 8.8e-13 78.6 265 27.9
Sc19g0008410 Simmondsia chinensis HOM05D007529 ORTHO05D007451 8.8e-13 78.6 248 26.2
FAN14G0143 Fragaria x ananassa HOM05D007529 ORTHO05D007451 1.2e-12 78.2 219 29.2
Manes.09G016732 Manihot esculenta HOM05D007529 ORTHO05D007451 1.2e-12 78.2 262 28.2
AL6G13510 Arabidopsis lyrata HOM05D021302 ORTHO05D021386 1.5e-12 77.8 133 39.8
Solyc04g017670.3 Solanum lycopersicum HOM05D007529 ORTHO05D007451 3.4e-12 76.6 266 27.1
arahy.Tifrunner.gnm1.ann1.5P9T4R Arachis hypogaea HOM05D007529 ORTHO05D007451 1.3e-11 74.7 126 37.3
EL10Ac3g07171 Beta vulgaris HOM05D007529 ORTHO05D007451 1.3e-11 74.7 259 26.3
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 2.8e-11 73.6 242 24.8
AL6G13530 Arabidopsis lyrata HOM05D021302 ORTHO05D021386 3.7e-11 73.2 154 32.5
HanXRQChr01g0008291 Helianthus annuus HOM05D007529 ORTHO05D007451 4.8e-11 72.8 245 26.5
MELO3C014209.2 Cucumis melo HOM05D007529 ORTHO05D007451 6.3e-11 72.4 206 26.7
Peaxi162Scf00130g00112 Petunia axillaris HOM05D007529 ORTHO05D007451 6.3e-11 72.4 242 26.9
Sopen04g008750 Solanum pennellii HOM05D007529 ORTHO05D007451 8.3e-11 72.0 267 26.6
PSO384G2280 Papaver somniferum HOM05D007529 ORTHO05D007451 1.4e-10 71.2 266 24.8
AUR62030393 Chenopodium quinoa HOM05D007529 ORTHO05D007451 1.8e-10 70.9 253 25.7
Psat6g093280 Pisum sativum HOM05D007529 ORTHO05D007451 9.1e-10 68.6 167 31.7
Actinidia38146 Actinidia chinensis HOM05D000001 ORTHO05D009995 3.5e-09 66.6 239 25.5
Carub.0006s0288 Capsella rubella HOM05D021302 ORTHO05D021386 7.7e-09 65.5 148 33.1
HPP92_011341 Vanilla planifolia HOM05D007529 ORTHO05D007451 1.0e-08 65.1 194 26.8
HPP92_011264 Vanilla planifolia HOM05D007529 ORTHO05D007451 1.3e-08 64.7 163 27.6
Cc06_g18420 Coffea canephora HOM05D007529 ORTHO05D007451 5.0e-08 62.8 241 25.7
HanXRQChr17g0545881 Helianthus annuus HOM05D007529 ORTHO05D007451 6.5e-08 62.4 252 24.2
Os01g0800900 Oryza sativa ssp. japonica HOM05D007529 ORTHO05D007451 1.5e-07 61.2 261 26.4
AT5G03930 Arabidopsis thaliana HOM05D021302 ORTHO05D021386 2.5e-07 60.5 155 30.3
SGA_v2.0_scaffold21G09330 Striga asiatica HOM05D007529 ORTHO05D007451 1.2e-06 58.2 256 24.2
Ciclev10006854m.g Citrus clementina HOM05D007529 ORTHO05D007451 2.7e-06 57.0 246 26.0
Zm00001eb150670 Zea mays HOM05D007529 ORTHO05D007451 4.7e-06 56.2 165 29.1
Nitab4.5_0005195g0010 Nicotiana tabacum HOM05D007529 ORTHO05D007451 8.0e-06 55.5 253 23.7


User provided reference genes

Program Settings