Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 1.4e-198 696.0 353 100.0
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 1.5e-195 686.0 353 98.6
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 1.5e-195 686.0 353 98.6
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 1.4e-193 679.5 353 97.5
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 2.8e-178 628.6 353 90.7
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 3.1e-177 625.2 353 90.7
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 7.0e-177 624.0 353 90.7
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 1.7e-175 619.4 353 90.7
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 3.8e-175 618.2 354 89.5
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 2.5e-174 615.5 353 89.8
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 4.1e-169 598.2 353 85.6
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 3.4e-155 552.0 353 78.8
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 4.9e-154 548.1 351 76.9
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.7e-151 539.7 342 78.4
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 3.9e-151 538.5 354 75.4
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 5.6e-150 534.6 353 75.9
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 7.3e-150 534.3 351 75.8
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 1.2e-149 533.5 349 75.4
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.6e-149 533.1 342 77.5
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 1.4e-148 530.0 336 78.3
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 1.4e-148 530.0 358 73.2
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 5.2e-148 528.1 301 84.4
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 8.9e-148 527.3 343 74.9
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 1.5e-147 526.6 393 69.2
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 2.6e-147 525.8 301 84.1
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 2.6e-147 525.8 323 78.6
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 3.4e-147 525.4 343 76.4
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 4.4e-147 525.0 342 77.2
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 4.4e-147 525.0 351 74.1
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 5.8e-147 524.6 352 75.9
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.3e-146 523.5 351 73.5
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 2.2e-146 522.7 358 73.5
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 2.2e-146 522.7 343 76.4
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 2.2e-146 522.7 340 75.3
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 2.2e-146 522.7 351 75.2
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 3.7e-146 521.9 351 74.9
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 4.9e-146 521.5 345 75.1
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 1.1e-145 520.4 340 75.0
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 3.2e-145 518.8 312 79.8
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 5.4e-145 518.1 361 72.0
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 5.4e-145 518.1 340 75.9
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 7.0e-145 517.7 340 75.6
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 7.0e-145 517.7 345 74.5
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 7.0e-145 517.7 345 74.2
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 1.6e-144 516.5 330 76.7
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 1.6e-144 516.5 309 81.2
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 3.5e-144 515.4 301 83.4
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 3.5e-144 515.4 303 82.8
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 6.0e-144 514.6 349 72.5
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 1.0e-143 513.8 356 73.0
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 1.7e-143 513.1 347 73.5
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 1.7e-143 513.1 341 75.4
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 2.5e-142 509.2 305 80.7
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 2.5e-142 509.2 357 71.4
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 2.5e-142 509.2 346 73.1
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 4.3e-142 508.4 345 72.5
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 5.6e-142 508.1 303 80.9
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 5.6e-142 508.1 348 72.1
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 1.6e-141 506.5 356 71.1
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.6e-141 506.5 354 71.2
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 2.1e-141 506.1 356 71.1
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 2.8e-141 505.8 356 71.1
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 2.8e-141 505.8 348 71.8
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 6.2e-141 504.6 320 76.9
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 1.8e-140 503.1 342 73.4
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 4.0e-140 501.9 361 69.0
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 8.9e-140 500.7 301 80.4
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.2e-139 500.4 361 69.5
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 4.4e-139 498.4 303 80.2
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 7.5e-139 497.7 324 75.0
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.7e-138 496.5 310 76.5
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 2.1e-136 489.6 309 78.3
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 3.9e-135 485.3 399 65.4
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 5.1e-135 485.0 307 78.2
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 8.6e-135 484.2 395 64.3
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 4.4e-131 471.9 319 71.2
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 7.6e-131 471.1 320 71.9
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 1.9e-129 466.5 304 72.7
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 3.0e-127 459.1 281 78.3
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 3.0e-127 459.1 306 73.2
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 1.2e-125 453.8 313 71.9
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 3.2e-121 439.1 311 65.6
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 3.2e-121 439.1 311 65.6
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 4.2e-121 438.7 323 67.2
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 9.3e-121 437.6 347 63.7
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 2.7e-120 436.0 362 65.5
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 1.7e-119 433.3 338 62.1
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 5.1e-119 431.8 318 68.9
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.9e-118 429.9 297 71.7
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 1.4e-116 423.7 300 65.7
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 3.4e-115 419.1 311 66.2
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 1.3e-111 407.1 357 61.9
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 3.0e-103 379.4 264 73.9
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 4.8e-101 372.1 279 67.4
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 1.5e-94 350.5 347 51.6
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 9.0e-92 341.3 255 71.0
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 2.9e-90 336.3 308 52.3
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 1.4e-84 317.4 258 62.0
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 7.7e-83 311.6 184 81.5
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 9.4e-81 304.7 309 50.5
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 2.3e-79 300.1 380 49.2
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 3.0e-79 299.7 244 66.0
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 2.6e-78 296.6 226 66.8
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 1.8e-76 290.4 243 58.8
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 2.4e-68 263.5 204 65.7
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 3.2e-65 253.1 248 57.7
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 5.7e-62 242.3 124 90.3
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 1.7e-61 240.7 124 89.5
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.4e-55 221.1 123 80.5
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.4e-55 221.1 123 80.5
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 6.5e-50 202.2 182 61.0
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 9.5e-49 198.4 150 69.3
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 1.4e-44 184.5 144 70.8
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 1.4e-39 167.9 120 75.8
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 1.2e-38 164.9 122 63.9
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 1.3e-37 161.4 102 81.4
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 4.9e-37 159.5 297 36.0
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 1.3e-34 151.4 117 70.9
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 3.0e-34 150.2 307 31.3
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 2.5e-33 147.1 78 88.5
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 6.8e-31 139.0 102 73.5
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 2.7e-27 127.1 114 63.2
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 3.5e-27 126.7 66 89.4
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 1.0e-26 125.2 180 40.6
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 2.3e-23 114.0 114 55.3
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 1.6e-19 101.3 180 37.2
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 8.6e-18 95.5 133 47.4
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 1.1e-12 78.6 45 82.2
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 1.1e-12 78.6 64 64.1
Lj1g0008117 Lotus japonicus HOM05D001625 ORTHO05D008114 2.1e-08 64.3 239 28.0
VMungo1309G1770 Vigna mungo HOM05D001625 ORTHO05D008114 2.8e-08 63.9 243 27.2
Phvul.009G064000 Phaseolus vulgaris HOM05D001625 ORTHO05D008114 4.7e-08 63.2 233 27.5
CSS0045021 Camellia sinensis var. sinensis HOM05D001625 ORTHO05D008114 8.1e-08 62.4 295 25.1
AL7G18200 Arabidopsis lyrata HOM05D001625 ORTHO05D008114 4.0e-07 60.1 231 24.7
Rhsim06G0048400 Rhododendron simsii HOM05D001625 ORTHO05D008114 4.0e-07 60.1 250 26.4
AT4G33360 Arabidopsis thaliana HOM05D001625 ORTHO05D008114 6.9e-07 59.3 233 24.9
QL02p005347 Quercus lobata HOM05D001625 ORTHO05D008114 6.9e-07 59.3 232 27.2
Carub.0007s0712 Capsella rubella HOM05D001625 ORTHO05D008114 9.0e-07 58.9 231 24.7
Cpa.g.sc49.3 Carica papaya HOM05D001625 ORTHO05D008114 9.0e-07 58.9 253 23.7
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 9.0e-07 58.9 59 52.5
Cfa018529 Carpinus fangiana HOM05D001625 ORTHO05D008114 2.0e-06 57.8 244 27.5
arahy.Tifrunner.gnm1.ann1.SS1ETW Arachis hypogaea HOM05D001625 ORTHO05D008114 5.8e-06 56.2 230 27.0
arahy.Tifrunner.gnm1.ann1.GU4KEX Arachis hypogaea HOM05D001625 ORTHO05D008114 7.6e-06 55.8 230 27.0
CiPaw.15G061300 Carya illinoinensis HOM05D001625 ORTHO05D008114 7.6e-06 55.8 234 25.6
Medtr3g101500 Medicago truncatula HOM05D001625 ORTHO05D008114 9.9e-06 55.5 231 24.7


User provided reference genes

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