Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 5.3e-54 214.2 113 100.0
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 5.3e-54 214.2 113 100.0
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 5.3e-54 214.2 113 100.0
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 5.3e-54 214.2 113 100.0
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 2.5e-51 205.3 113 97.3
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 9.1e-46 186.8 121 82.6
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 7.7e-45 183.7 125 79.2
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 1.7e-44 182.6 125 78.4
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 3.8e-44 181.4 118 80.5
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 6.5e-44 180.6 125 77.6
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 6.5e-44 180.6 127 76.4
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 2.9e-36 155.2 128 65.6
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 1.0e-33 146.7 121 67.8
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 2.0e-32 142.5 136 59.6
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 2.6e-32 142.1 126 61.9
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 4.4e-32 141.4 128 60.9
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 5.7e-32 141.0 128 60.9
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 5.7e-32 141.0 128 60.9
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 9.8e-32 140.2 130 57.7
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 3.7e-31 138.3 137 57.7
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 6.3e-31 137.5 137 56.9
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 6.3e-31 137.5 137 56.9
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 1.1e-30 136.7 121 60.3
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 1.4e-30 136.3 118 59.3
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 1.8e-30 136.0 121 58.7
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 4.1e-30 134.8 136 55.9
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 1.6e-29 132.9 148 52.0
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 1.6e-29 132.9 140 52.9
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 2.0e-29 132.5 129 56.6
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 2.0e-29 132.5 136 57.4
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 3.5e-29 131.7 140 52.1
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 3.5e-29 131.7 117 61.5
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 3.5e-29 131.7 128 53.9
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 3.5e-29 131.7 133 52.6
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 3.5e-29 131.7 133 52.6
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 3.5e-29 131.7 117 62.4
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 5.9e-29 131.0 122 58.2
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 7.8e-29 130.6 117 57.3
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 1.0e-28 130.2 119 58.0
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 1.7e-28 129.4 134 56.7
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 1.7e-28 129.4 134 56.7
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 2.9e-28 128.6 123 54.5
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 3.8e-28 128.3 139 51.8
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 3.8e-28 128.3 151 49.7
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 3.8e-28 128.3 138 54.3
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 6.6e-28 127.5 117 55.6
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 8.6e-28 127.1 126 58.7
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 8.6e-28 127.1 139 51.8
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 1.1e-27 126.7 119 54.6
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 1.5e-27 126.3 140 52.1
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 1.9e-27 125.9 129 55.0
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 1.9e-27 125.9 139 51.1
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 1.9e-27 125.9 128 54.7
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 2.5e-27 125.6 132 52.3
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 2.5e-27 125.6 136 51.5
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 2.5e-27 125.6 138 54.3
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 2.5e-27 125.6 130 54.6
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 2.5e-27 125.6 138 53.6
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 3.3e-27 125.2 141 54.6
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 3.3e-27 125.2 140 54.3
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 4.3e-27 124.8 135 52.6
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 4.3e-27 124.8 142 50.7
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 4.3e-27 124.8 142 50.7
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 4.3e-27 124.8 134 50.7
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 5.6e-27 124.4 133 50.4
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 5.6e-27 124.4 138 53.6
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 5.6e-27 124.4 140 49.3
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 7.3e-27 124.0 124 58.1
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 7.3e-27 124.0 118 51.7
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 7.3e-27 124.0 148 46.6
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 7.3e-27 124.0 139 54.0
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 9.5e-27 123.6 131 52.7
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 9.5e-27 123.6 131 52.7
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 9.5e-27 123.6 124 57.3
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 9.5e-27 123.6 124 55.6
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 9.5e-27 123.6 130 50.0
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 1.2e-26 123.2 140 48.6
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 1.2e-26 123.2 130 52.3
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 1.6e-26 122.9 149 49.0
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 1.6e-26 122.9 124 57.3
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.6e-26 122.9 124 57.3
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.6e-26 122.9 124 57.3
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.6e-26 122.9 124 57.3
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 1.6e-26 122.9 128 53.1
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.6e-26 122.9 140 49.3
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 2.1e-26 122.5 152 46.1
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 2.1e-26 122.5 131 56.5
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 2.8e-26 122.1 132 53.0
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 2.8e-26 122.1 128 51.6
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 3.6e-26 121.7 142 47.9
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 3.6e-26 121.7 146 45.9
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 8.0e-26 120.6 143 51.0
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 8.0e-26 120.6 140 48.6
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 1.4e-25 119.8 135 52.6
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 1.4e-25 119.8 147 46.9
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 1.8e-25 119.4 128 53.9
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 1.8e-25 119.4 117 53.8
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 2.3e-25 119.0 127 53.5
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 8.9e-25 117.1 112 57.1
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 1.2e-24 116.7 125 48.8
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 1.5e-24 116.3 142 50.0
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 1.5e-24 116.3 142 47.9
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.0e-24 115.9 111 55.9
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 3.4e-24 115.2 127 49.6
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 7.5e-24 114.0 111 55.9
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 1.3e-23 113.2 142 47.2
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 1.7e-23 112.8 143 48.3
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 2.9e-23 112.1 144 46.5
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 3.7e-23 111.7 129 49.6
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 8.3e-23 110.5 110 61.8
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 2.4e-22 109.0 135 51.1
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 3.9e-20 101.7 143 42.7
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 6.6e-20 100.9 130 48.5
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 3.3e-19 98.6 139 43.9
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 1.2e-18 96.7 143 43.4
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 1.6e-18 96.3 146 40.4
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 4.7e-18 94.7 118 46.6
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 8.9e-17 90.5 106 50.0
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 7.5e-16 87.4 108 44.4
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 3.7e-15 85.1 106 49.1
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 3.7e-15 85.1 108 45.4
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 6.4e-15 84.3 109 46.8
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 2.4e-14 82.4 125 42.4
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 2.5e-11 72.4 51 66.7
Cre01.g031250 Chlamydomonas reinhardtii HOM05D006047 ORTHO05D007353 2.1e-10 69.3 105 41.0
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 2.1e-10 69.3 65 52.3
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 6.2e-10 67.8 47 63.8
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 6.2e-10 67.8 71 50.7
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 3.7e-07 58.5 46 54.3
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 2.4e-06 55.8 100 39.0
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 5.4e-06 54.7 107 37.4
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 5.4e-06 54.7 107 37.4
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 5.4e-06 54.7 107 37.4
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 9.2e-06 53.9 103 35.9


User provided reference genes

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