Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p49850 Brassica napus HOM05D003519 ORTHO05D021767 3.4e-94 348.2 163 100.0
A04p15580 Brassica napus HOM05D003519 ORTHO05D021767 2.5e-89 332.0 168 94.0
BraA04t17193Z Brassica rapa HOM05D003519 ORTHO05D021767 5.6e-81 304.3 168 89.3
BcaB06g27739 Brassica carinata HOM05D003519 ORTHO05D004443 1.5e-57 226.5 239 52.3
BcaC02g08848 Brassica carinata HOM05D003519 ORTHO05D021767 4.4e-49 198.4 91 100.0
BcaC02g08849 Brassica carinata HOM05D003519 ORTHO05D021767 4.4e-49 198.4 91 100.0
BolC4t26573H Brassica oleracea HOM05D003519 ORTHO05D021767 4.4e-49 198.4 91 100.0
Sp7g02520 Schrenkiella parvula HOM05D003519 ORTHO05D004443 7.7e-46 187.6 242 43.0
C04p45870 Brassica napus HOM05D003519 ORTHO05D004443 5.2e-42 174.9 204 49.0
BcaB06g27311 Brassica carinata HOM05D003519 ORTHO05D004443 1.5e-41 173.3 220 46.4
A04p12200 Brassica napus HOM05D003519 ORTHO05D004443 2.6e-41 172.6 230 42.2
BcaB06g27309 Brassica carinata HOM05D003519 ORTHO05D004443 9.7e-41 170.6 230 42.2
C04p45850 Brassica napus HOM05D003519 ORTHO05D004443 2.2e-40 169.5 228 41.7
BcaB06g27331 Brassica carinata HOM05D003519 ORTHO05D004443 4.8e-40 168.3 233 41.6
BcaB06g27312 Brassica carinata HOM05D003519 ORTHO05D004443 1.1e-39 167.2 230 40.9
C04p45890 Brassica napus HOM05D003519 ORTHO05D004443 1.1e-39 167.2 230 40.9
Sp7g02470 Schrenkiella parvula HOM05D003519 ORTHO05D004443 1.0e-37 160.6 214 41.1
AT5G39450 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 1.3e-37 160.2 92 81.5
AL7G50860 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 1.7e-37 159.8 92 81.5
AL7G50820 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 2.9e-37 159.1 209 44.0
A04p12220 Brassica napus HOM05D003519 ORTHO05D004443 3.8e-37 158.7 91 82.4
BolC4t26171H Brassica oleracea HOM05D003519 ORTHO05D004443 3.8e-37 158.7 192 44.3
THA.LOC104819485 Tarenaya hassleriana HOM05D003519 ORTHO05D004443 5.0e-37 158.3 91 79.1
CARHR262890 Cardamine hirsuta HOM05D003519 ORTHO05D004443 1.9e-36 156.4 257 37.4
Sp7g02490 Schrenkiella parvula HOM05D003519 ORTHO05D004443 1.9e-36 156.4 91 76.9
Sp7g02530 Schrenkiella parvula HOM05D003519 ORTHO05D004443 4.2e-36 155.2 91 78.0
AL7G50850 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 5.5e-36 154.8 91 78.0
BraA04t16884Z Brassica rapa HOM05D003519 ORTHO05D004443 1.2e-35 153.7 92 77.2
A04p12230 Brassica napus HOM05D003519 ORTHO05D004443 2.7e-35 152.5 93 77.4
BcaB06g27330 Brassica carinata HOM05D003519 ORTHO05D004443 8.0e-35 151.0 91 74.7
Carub.0007s3648 Capsella rubella HOM05D003519 ORTHO05D004443 8.0e-35 151.0 92 77.2
AL7G50830 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 1.4e-34 150.2 91 75.8
GSVIVG01022332001 Vitis vinifera HOM05D003519 ORTHO05D004443 1.4e-34 150.2 91 74.7
AT5G39480 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 1.8e-34 149.8 91 75.8
Cpa.g.sc37.5 Carica papaya HOM05D003519 ORTHO05D004443 1.8e-34 149.8 91 74.7
AT5G39460 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 2.3e-34 149.4 91 74.7
A04p12190 Brassica napus HOM05D003519 ORTHO05D004443 2.3e-34 149.4 91 73.6
CARHR258220 Cardamine hirsuta HOM05D003519 ORTHO05D004443 2.3e-34 149.4 211 40.3
Ciclev10000587m.g Citrus clementina HOM05D003519 ORTHO05D004443 2.3e-34 149.4 91 72.5
C04p45840 Brassica napus HOM05D003519 ORTHO05D004443 3.0e-34 149.1 90 74.4
BraA04t16883Z Brassica rapa HOM05D003519 ORTHO05D004443 3.0e-34 149.1 90 74.4
CARHR262900 Cardamine hirsuta HOM05D003519 ORTHO05D004443 4.0e-34 148.7 92 75.0
Potri.005G067300 Populus trichocarpa HOM05D003519 ORTHO05D004443 4.0e-34 148.7 134 55.2
Thhalv10027700m.g Eutrema salsugineum HOM05D003519 ORTHO05D004443 5.2e-34 148.3 92 75.0
Sabra07G0084100 Salix brachista HOM05D003519 ORTHO05D004443 5.2e-34 148.3 91 72.5
Thecc.01G137200 Theobroma cacao HOM05D003519 ORTHO05D004443 5.2e-34 148.3 91 73.6
Nitab4.5_0003068g0020 Nicotiana tabacum HOM05D003519 ORTHO05D004443 6.8e-34 147.9 91 69.2
BcaB06g27308 Brassica carinata HOM05D003519 ORTHO05D004443 8.8e-34 147.5 90 73.3
BolC4t26170H Brassica oleracea HOM05D003519 ORTHO05D004443 8.8e-34 147.5 90 73.3
Atru.chr4.987 Acer truncatum HOM05D003519 ORTHO05D004443 1.2e-33 147.1 91 73.6
AT5G39490 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 1.5e-33 146.7 91 73.6
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 1.5e-33 146.7 91 69.2
Gohir.A05G382700 Gossypium hirsutum HOM05D003519 ORTHO05D004443 1.5e-33 146.7 91 72.5
Gohir.D04G033200 Gossypium hirsutum HOM05D003519 ORTHO05D004443 1.5e-33 146.7 91 72.5
Gorai.012G036900 Gossypium raimondii HOM05D003519 ORTHO05D004443 1.5e-33 146.7 91 72.5
Manes.12G158800 Manihot esculenta HOM05D003519 ORTHO05D004443 1.5e-33 146.7 117 61.5
Sabra05G0055300 Salix brachista HOM05D003519 ORTHO05D004443 1.5e-33 146.7 143 52.4
Sc09g0002240 Simmondsia chinensis HOM05D003519 ORTHO05D004443 2.0e-33 146.4 133 55.6
Eucgr.H05140 Eucalyptus grandis HOM05D003519 ORTHO05D004443 2.6e-33 146.0 91 71.4
CSS0008781 Camellia sinensis var. sinensis HOM05D003519 ORTHO05D004443 4.4e-33 145.2 91 69.2
CSS0040411 Camellia sinensis var. sinensis HOM05D003519 ORTHO05D004443 4.4e-33 145.2 91 69.2
CANSAT80G2376 Cannabis sativa HOM05D003519 ORTHO05D004443 4.4e-33 145.2 91 71.4
Hma1.2p1_0310F.1_g121010 Hydrangea macrophylla HOM05D003519 ORTHO05D004443 4.4e-33 145.2 91 70.3
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 5.7e-33 144.8 91 70.3
TWI79G1726 Tripterygium wilfordii HOM05D003519 ORTHO05D004443 5.7e-33 144.8 91 72.5
arahy.Tifrunner.gnm1.ann1.CM19QL Arachis hypogaea HOM05D003519 ORTHO05D004443 7.5e-33 144.4 91 71.4
Nitab4.5_0000227g0340 Nicotiana tabacum HOM05D003519 ORTHO05D004443 7.5e-33 144.4 89 69.7
arahy.Tifrunner.gnm1.ann1.JB39ED Arachis hypogaea HOM05D003519 ORTHO05D004443 9.8e-33 144.1 91 70.3
CiPaw.03G118200 Carya illinoinensis HOM05D003519 ORTHO05D004443 9.8e-33 144.1 89 70.8
FvH4_1g24840 Fragaria vesca HOM05D003519 ORTHO05D004443 9.8e-33 144.1 91 69.2
Peaxi162Scf00711g00512 Petunia axillaris HOM05D003519 ORTHO05D004443 9.8e-33 144.1 91 67.0
Aa31LG9G16540 Aethionema arabicum HOM05D003519 ORTHO05D004443 1.3e-32 143.7 91 70.3
CAN.G475.7 Capsicum annuum HOM05D003519 ORTHO05D004443 1.3e-32 143.7 91 67.0
CARHR262850 Cardamine hirsuta HOM05D003519 ORTHO05D004443 1.3e-32 143.7 91 71.4
Prupe.4G275200 Prunus persica HOM05D003519 ORTHO05D004443 1.3e-32 143.7 91 71.4
VMungo1309G2829 Vigna mungo HOM05D003519 ORTHO05D004443 1.3e-32 143.7 91 71.4
DCAR_019993 Daucus carota HOM05D003519 ORTHO05D004443 1.7e-32 143.3 91 69.2
FAN28G0413 Fragaria x ananassa HOM05D003519 ORTHO05D004443 1.7e-32 143.3 91 69.2
Potri.007G102000 Populus trichocarpa HOM05D003519 ORTHO05D004443 1.7e-32 143.3 91 70.3
QL10p041283 Quercus lobata HOM05D003519 ORTHO05D004443 1.7e-32 143.3 91 68.1
Ca_16980_v3 Cicer arietinum L. HOM05D003519 ORTHO05D004443 2.2e-32 142.9 91 70.3
FAN19G3005 Fragaria x ananassa HOM05D003519 ORTHO05D004443 2.2e-32 142.9 91 68.1
RcHm_v2.0_Chr2g0122451 Rosa chinensis HOM05D003519 ORTHO05D004443 2.2e-32 142.9 91 69.2
CARHR262880 Cardamine hirsuta HOM05D003519 ORTHO05D004443 3.7e-32 142.1 213 39.4
Phvul.009G154700 Phaseolus vulgaris HOM05D003519 ORTHO05D004443 3.7e-32 142.1 91 71.4
Glyma.06G155700 Glycine max HOM05D003519 ORTHO05D004443 4.8e-32 141.7 91 70.3
BcaB06g27333 Brassica carinata HOM05D003519 ORTHO05D004443 6.3e-32 141.4 88 78.4
ClCG04G002210 Citrullus lanatus HOM05D003519 ORTHO05D004443 6.3e-32 141.4 91 69.2
Lalb_Chr11g0068601 Lupinus albus HOM05D003519 ORTHO05D004443 6.3e-32 141.4 91 71.4
Duzib187G0434 Durio zibethinus HOM05D003519 ORTHO05D004443 8.3e-32 141.0 91 68.1
Glyma.05G194000 Glycine max HOM05D003519 ORTHO05D004443 8.3e-32 141.0 91 70.3
Haze_25334 Corylus avellana HOM05D003519 ORTHO05D004443 1.1e-31 140.6 104 61.5
FAN26G0860 Fragaria x ananassa HOM05D003519 ORTHO05D004443 1.1e-31 140.6 91 67.0
ECA238G3965 Erigeron canadensis HOM05D003519 ORTHO05D004443 1.4e-31 140.2 91 68.1
Solyc04g076520.3 Solanum lycopersicum HOM05D003519 ORTHO05D004443 1.4e-31 140.2 91 64.8
Sopen04g030250 Solanum pennellii HOM05D003519 ORTHO05D004443 1.4e-31 140.2 91 64.8
PGSC0003DMG400009336 Solanum tuberosum HOM05D003519 ORTHO05D004443 1.4e-31 140.2 91 64.8
Aqoxy5G02420 Aquilegia oxysepala HOM05D003519 ORTHO05D004443 1.8e-31 139.8 91 69.2
FAN23G1921 Fragaria x ananassa HOM05D003519 ORTHO05D004443 1.8e-31 139.8 91 68.1
TPR.G33582 Trifolium pratense HOM05D003519 ORTHO05D004443 1.8e-31 139.8 91 67.0
Nn1g08957 Nelumbo nucifera HOM05D003519 ORTHO05D004443 2.4e-31 139.4 91 67.0
Psat5g059880 Pisum sativum HOM05D003519 ORTHO05D004443 2.4e-31 139.4 91 67.0
Glyma.08G002000 Glycine max HOM05D003519 ORTHO05D004443 3.1e-31 139.0 91 69.2
PGR102G0700 Punica granatum HOM05D003519 ORTHO05D004443 3.1e-31 139.0 91 65.9
Sed0005441 Sechium edule HOM05D003519 ORTHO05D004443 3.1e-31 139.0 91 65.9
Medtr3g096670 Medicago truncatula HOM05D003519 ORTHO05D004443 5.4e-31 138.3 91 67.0
Hund21800 Selenicereus undatus HOM05D003519 ORTHO05D004443 5.4e-31 138.3 91 65.9
MSTRG.15264 Avicennia marina HOM05D003519 ORTHO05D004443 7.0e-31 137.9 91 63.7
Lj2A614T30 Lonicera japonica HOM05D003519 ORTHO05D004443 7.0e-31 137.9 91 64.8
Phvul.002G274400 Phaseolus vulgaris HOM05D003519 ORTHO05D004443 7.0e-31 137.9 91 69.2
Lsat_1_v5_gn_2_36940 Lactuca sativa HOM05D003519 ORTHO05D004443 9.1e-31 137.5 91 64.8
Lalb_Chr23g0272671 Lupinus albus HOM05D003519 ORTHO05D004443 9.1e-31 137.5 91 68.1
MD15G1134900 Malus domestica HOM05D003519 ORTHO05D004443 9.1e-31 137.5 91 65.9
arahy.Tifrunner.gnm1.ann1.02NDWK Arachis hypogaea HOM05D003519 ORTHO05D004443 1.2e-30 137.1 91 69.2
arahy.Tifrunner.gnm1.ann1.I6W5T3 Arachis hypogaea HOM05D003519 ORTHO05D004443 1.2e-30 137.1 91 69.2
CsaV3_4G030500 Cucumis sativus L. HOM05D003519 ORTHO05D004443 1.2e-30 137.1 91 67.0
PSO063G6904 Papaver somniferum HOM05D003519 ORTHO05D004443 1.2e-30 137.1 91 64.8
PSO832G0337 Papaver somniferum HOM05D003519 ORTHO05D004443 1.6e-30 136.7 91 63.7
Actinidia06577 Actinidia chinensis HOM05D003519 ORTHO05D004443 2.0e-30 136.3 91 64.8
EL10Ac4g09622 Beta vulgaris HOM05D003519 ORTHO05D004443 2.7e-30 136.0 91 65.9
MELO3C008911.2 Cucumis melo HOM05D003519 ORTHO05D004443 2.7e-30 136.0 91 65.9
Cc00_g06200 Coffea canephora HOM05D003519 ORTHO05D004443 5.9e-30 134.8 89 64.0
SGA_v2.0_scaffold3G01832 Striga asiatica HOM05D003519 ORTHO05D004443 5.9e-30 134.8 89 65.2
VMungo0251G1228 Vigna mungo HOM05D003519 ORTHO05D004443 5.9e-30 134.8 91 68.1
Rhsim08G0000500 Rhododendron simsii HOM05D003519 ORTHO05D004443 1.0e-29 134.0 91 65.9
TAR625G0887 Trochodendron aralioides HOM05D003519 ORTHO05D004443 1.7e-29 133.3 91 62.6
AUR62000513 Chenopodium quinoa HOM05D003519 ORTHO05D004443 2.3e-29 132.9 91 68.1
PSO832G1142 Papaver somniferum HOM05D003519 ORTHO05D004443 2.3e-29 132.9 91 62.6
Oeu050088.1 Olea europaea HOM05D003519 ORTHO05D004443 5.0e-29 131.7 89 61.8
Oeu050089.1 Olea europaea HOM05D003519 ORTHO05D004443 5.0e-29 131.7 89 61.8
Migut.L00387 Erythranthe guttata HOM05D003519 ORTHO05D004443 6.6e-29 131.3 89 64.0
Migut.L00390 Erythranthe guttata HOM05D003519 ORTHO05D004443 8.6e-29 131.0 91 65.9
Migut.L00389 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.1e-28 130.6 91 58.2
Migut.L00523 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.1e-28 130.6 91 61.5
PSO063G4810 Papaver somniferum HOM05D003519 ORTHO05D004443 1.1e-28 130.6 91 59.3
TAR229G0003 Trochodendron aralioides HOM05D003519 ORTHO05D004443 1.9e-28 129.8 91 61.5
TAR381G0828 Trochodendron aralioides HOM05D003519 ORTHO05D004443 1.9e-28 129.8 91 61.5
Migut.L00383 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.5e-28 129.4 91 61.5
Migut.L00372 Erythranthe guttata HOM05D003519 ORTHO05D004443 3.3e-28 129.0 91 60.4
Migut.O00452 Erythranthe guttata HOM05D003519 ORTHO05D004443 3.3e-28 129.0 91 60.4
SalBow5G2644 Salvia bowleyana HOM05D003519 ORTHO05D004443 3.3e-28 129.0 91 58.2
Migut.L00373 Erythranthe guttata HOM05D003519 ORTHO05D004443 7.2e-28 127.9 91 60.4
Ah.04g157880 Amaranthus hybridus HOM05D003519 ORTHO05D004443 1.2e-27 127.1 99 58.6
Ca_17623_v3 Cicer arietinum L. HOM05D003519 ORTHO05D004443 4.7e-27 125.2 92 64.1
CDE06G0958 Ceratophyllum demersum HOM05D003519 ORTHO05D004443 6.1e-27 124.8 91 60.4
Migut.L00375 Erythranthe guttata HOM05D003519 ORTHO05D004443 8.0e-27 124.4 89 58.4
TPR.G37338 Trifolium pratense HOM05D003519 ORTHO05D004443 1.0e-26 124.0 92 62.0
C04p45910 Brassica napus HOM05D003519 ORTHO05D024023 1.4e-26 123.6 206 39.3
Migut.L00388 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.4e-26 123.6 91 56.0
CDE08G0134 Ceratophyllum demersum HOM05D003519 ORTHO05D004443 2.3e-26 122.9 91 59.3
Migut.L00385 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.3e-26 122.9 88 60.2
BcaB06g27313 Brassica carinata HOM05D003519 ORTHO05D024023 4.0e-26 122.1 106 61.3
Migut.L00382 Erythranthe guttata HOM05D003519 ORTHO05D004443 5.2e-26 121.7 91 60.4
Migut.L00522 Erythranthe guttata HOM05D003519 ORTHO05D004443 5.2e-26 121.7 91 60.4
HPP92_025170 Vanilla planifolia HOM05D003519 ORTHO05D004443 5.2e-26 121.7 92 63.0
MBI03_g39654_MAGBIO Magnolia biondii HOM05D003519 ORTHO05D004443 1.2e-25 120.6 91 57.1
Psat7g045400 Pisum sativum HOM05D003519 ORTHO05D004443 9.8e-25 117.5 93 63.4
BolC4t26173H Brassica oleracea HOM05D003519 ORTHO05D024023 1.3e-24 117.1 91 65.9
Migut.L00374 Erythranthe guttata HOM05D003519 ORTHO05D004443 1.7e-24 116.7 89 58.4
Medtr8g094190 Medicago truncatula HOM05D003519 ORTHO05D004443 1.7e-24 116.7 92 57.6
BcaC02g08850 Brassica carinata HOM05D003519 ORTHO05D024023 3.7e-24 115.5 51 100.0
SEGI_06784 Sequoiadendron giganteum HOM05D003519 ORTHO05D004443 4.9e-24 115.2 91 60.4
HPP92_006886 Vanilla planifolia HOM05D003519 ORTHO05D004443 4.9e-24 115.2 92 58.7
ATR0138G021 Amborella trichopoda HOM05D003519 ORTHO05D004443 1.2e-22 110.5 91 59.3
Migut.L00524 Erythranthe guttata HOM05D003519 ORTHO05D004443 7.8e-22 107.8 78 59.0
Pp3c14_13020 Physcomitrium patens HOM05D003519 ORTHO05D004443 1.3e-21 107.1 81 61.7
Migut.L00384 Erythranthe guttata HOM05D003519 ORTHO05D004443 5.0e-21 105.1 70 62.9
Pp3c17_16670 Physcomitrium patens HOM05D003519 ORTHO05D004443 5.0e-21 105.1 81 59.3
ATR0582G058 Amborella trichopoda HOM05D003519 ORTHO05D004443 1.5e-20 103.6 91 57.1
Medtr8g094150 Medicago truncatula HOM05D003519 ORTHO05D004443 5.8e-17 91.7 57 71.9
AagrBONN_evm.TU.Sc2ySwM_228.359 Anthoceros agrestis HOM05D003519 ORTHO05D004443 4.9e-16 88.6 70 55.7
Migut.L00386 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.5e-12 76.3 63 50.8
Lj4g0010335 Lotus japonicus HOM05D003519 ORTHO05D004443 4.3e-12 75.5 62 56.5
Zm00001eb174460 Zea mays HOM05D003519 ORTHO05D004443 4.3e-12 75.5 90 43.3
Os08g0105100 Oryza sativa ssp. japonica HOM05D003519 ORTHO05D004443 1.2e-11 73.9 80 47.5
Migut.L00566 Erythranthe guttata HOM05D003519 ORTHO05D004443 2.0e-09 66.6 57 52.6


User provided reference genes

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