Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08858 Brassica carinata HOM05D011849 ORTHO05D001736 5.5e-107 391.0 195 100.0
C04p49780 Brassica napus HOM05D011849 ORTHO05D001736 5.5e-107 391.0 195 100.0
BolC4t26569H Brassica oleracea HOM05D011849 ORTHO05D001736 5.5e-107 391.0 195 100.0
BraA04t17188Z Brassica rapa HOM05D011849 ORTHO05D001736 3.4e-101 371.7 195 94.9
BcaB06g27734 Brassica carinata HOM05D011849 ORTHO05D001736 7.7e-101 370.5 195 94.4
A04p15520 Brassica napus HOM05D011849 ORTHO05D001736 1.4e-99 366.3 195 93.8
Thhalv10028226m.g Eutrema salsugineum HOM05D011849 ORTHO05D001736 5.7e-72 274.6 197 74.6
Sp7g02800 Schrenkiella parvula HOM05D011849 ORTHO05D001736 9.8e-72 273.9 196 74.5
AL7G51260 Arabidopsis lyrata HOM05D011849 ORTHO05D001736 3.4e-64 248.8 198 67.2
AT5G39200 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 2.3e-60 236.1 202 65.3
CARHR263210 Cardamine hirsuta HOM05D011849 ORTHO05D001736 1.3e-55 220.3 201 61.7
Carub.0007s3672 Capsella rubella HOM05D011849 ORTHO05D001736 1.7e-39 166.8 196 52.0
AT5G39140 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 9.2e-38 161.0 153 60.8
AT5G39170 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 7.8e-37 157.9 155 59.4
Aa31LG9G16720 Aethionema arabicum HOM05D011849 ORTHO05D001736 1.2e-24 117.5 198 42.9
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.1e-14 84.3 210 33.8
unitig_32.g11770 Utricularia gibba HOM05D003787 ORTHO05D001736 1.6e-10 70.5 215 33.0
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 3.7e-10 69.3 148 36.5
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 6.2e-10 68.6 199 33.2
Eucgr.I02036 Eucalyptus grandis HOM05D003787 ORTHO05D001736 8.2e-10 68.2 165 34.5
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 1.1e-09 67.8 203 32.5
CiPaw.03G088400 Carya illinoinensis HOM05D003787 ORTHO05D001736 3.1e-09 66.2 205 29.8
CiPaw.04G055500 Carya illinoinensis HOM05D003787 ORTHO05D001736 4.0e-09 65.9 213 31.5
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 4.0e-09 65.9 59 57.6
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 5.3e-09 65.5 234 29.5
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 5.3e-09 65.5 147 36.1
SalBow1G2532 Salvia bowleyana HOM05D003787 ORTHO05D001736 5.3e-09 65.5 212 30.2
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 9.0e-09 64.7 170 34.1
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 9.0e-09 64.7 59 55.9
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 9.0e-09 64.7 238 29.0
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 2.0e-08 63.5 211 28.9
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 2.0e-08 63.5 189 31.2
ECA238G2630 Erigeron canadensis HOM05D003787 ORTHO05D001736 2.0e-08 63.5 224 33.5
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 2.6e-08 63.2 227 33.5
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 2.6e-08 63.2 165 34.5
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 2.6e-08 63.2 219 29.7
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 3.4e-08 62.8 176 33.0
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 4.5e-08 62.4 176 33.0
THA.LOC104805198 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 4.5e-08 62.4 151 36.4
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 5.8e-08 62.0 165 34.5
Rhsim08G0075000 Rhododendron simsii HOM05D003787 ORTHO05D001736 5.8e-08 62.0 198 31.8
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 7.6e-08 61.6 175 32.6
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 7.6e-08 61.6 196 31.1
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 7.6e-08 61.6 215 28.8
Lsat_1_v5_gn_2_90140 Lactuca sativa HOM05D003787 ORTHO05D001736 7.6e-08 61.6 210 30.5
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.0e-07 61.2 188 30.9
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 1.0e-07 61.2 177 31.6
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.3e-07 60.8 215 27.4
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 1.3e-07 60.8 206 31.1
SalBow1G5677 Salvia bowleyana HOM05D003787 ORTHO05D001736 1.3e-07 60.8 176 31.8
PGSC0003DMG400001359 Solanum tuberosum HOM05D003787 ORTHO05D001736 1.3e-07 60.8 199 31.2
AT3G02125 Arabidopsis thaliana HOM05D012214 ORTHO05D001736 1.7e-07 60.5 188 31.9
ClCG11G004790 Citrullus lanatus HOM05D003787 ORTHO05D001736 1.7e-07 60.5 184 31.5
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 2.2e-07 60.1 201 30.3
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 2.2e-07 60.1 152 33.6
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 2.2e-07 60.1 227 31.3
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 2.2e-07 60.1 80 46.2
THA.LOC104801821 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 2.9e-07 59.7 200 31.0
PGR004G1779 Punica granatum HOM05D003787 ORTHO05D001736 3.8e-07 59.3 256 28.9
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 4.9e-07 58.9 226 30.5
SGA_v2.0_scaffold148G36413 Striga asiatica HOM05D003787 ORTHO05D001736 4.9e-07 58.9 149 32.2
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 6.5e-07 58.5 245 29.0
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 6.5e-07 58.5 218 32.1
DCAR_025433 Daucus carota HOM05D003787 ORTHO05D001736 6.5e-07 58.5 218 33.5
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 6.5e-07 58.5 50 66.0
SalBow1G3309 Salvia bowleyana HOM05D003787 ORTHO05D001736 6.5e-07 58.5 176 31.2
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 8.4e-07 58.2 155 32.9
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 8.4e-07 58.2 195 32.3
CANSAT64G1049 Cannabis sativa HOM05D003787 ORTHO05D001736 1.1e-06 57.8 58 48.3
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 1.1e-06 57.8 204 25.5
AT1G74220 Arabidopsis thaliana HOM05D006637 ORTHO05D001736 1.4e-06 57.4 231 29.0
Manes.14G086000 Manihot esculenta HOM05D006637 ORTHO05D001736 1.4e-06 57.4 223 28.7
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 2.5e-06 56.6 208 32.2
Thhalv10022338m.g Eutrema salsugineum HOM05D012214 ORTHO05D001736 2.5e-06 56.6 195 27.7
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 2.5e-06 56.6 209 28.2
C02p31780 Brassica napus HOM05D006637 ORTHO05D001736 3.2e-06 56.2 212 31.1
BolC2t09205H Brassica oleracea HOM05D006637 ORTHO05D001736 3.2e-06 56.2 212 31.1
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 4.2e-06 55.8 234 27.8
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 4.2e-06 55.8 62 51.6
Gohir.D04G043300 Gossypium hirsutum HOM05D003787 ORTHO05D001736 5.5e-06 55.5 64 48.4
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 7.1e-06 55.1 59 45.8
AL3G11360 Arabidopsis lyrata HOM05D012214 ORTHO05D001736 9.3e-06 54.7 184 28.3
BcaC03g15494 Brassica carinata HOM05D006637 ORTHO05D001736 9.3e-06 54.7 212 32.5
Duzib264G1237 Durio zibethinus HOM05D003787 ORTHO05D001736 9.3e-06 54.7 179 29.1
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 9.3e-06 54.7 236 27.1
FvH4_6g46831 Fragaria vesca HOM05D003787 ORTHO05D001736 9.3e-06 54.7 210 27.1


User provided reference genes

Program Settings