Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08893 Brassica carinata HOM05D007361 ORTHO05D009239 9.9e-74 280.0 142 100.0
C04p49390 Brassica napus HOM05D007361 ORTHO05D009239 9.9e-74 280.0 142 100.0
BolC4t26525H Brassica oleracea HOM05D000331 ORTHO05D000732 6.5e-57 224.2 122 87.7
A07p21120 Brassica napus HOM05D007361 ORTHO05D009239 3.0e-54 215.3 145 75.9
BraA07t29798Z Brassica rapa HOM05D007361 ORTHO05D009239 8.7e-54 213.8 145 75.2
BcaC08g44581 Brassica carinata HOM05D007361 ORTHO05D009239 5.7e-53 211.1 146 74.7
C06p20480 Brassica napus HOM05D007361 ORTHO05D009239 5.7e-53 211.1 146 74.7
BcaB02g07865 Brassica carinata HOM05D007361 ORTHO05D009239 6.3e-52 207.6 143 73.4
Sp7g00060 Schrenkiella parvula HOM05D007361 ORTHO05D009239 2.6e-50 202.2 142 76.1
BolC6t37229H Brassica oleracea HOM05D000331 ORTHO05D000732 2.2e-49 199.1 125 76.8
Thhalv10026457m.g Eutrema salsugineum HOM05D007361 ORTHO05D009239 3.2e-48 195.3 143 70.6
AT5G42070 Arabidopsis thaliana HOM05D007361 ORTHO05D009239 2.1e-47 192.6 146 70.5
A04p15160 Brassica napus HOM05D007361 ORTHO05D009239 1.0e-46 190.3 144 74.3
Carub.0007s3327 Capsella rubella HOM05D007361 ORTHO05D009239 1.5e-45 186.4 144 67.4
CARHR212500 Cardamine hirsuta HOM05D007361 ORTHO05D009239 9.1e-43 177.2 144 67.4
THA.LOC104817582 Tarenaya hassleriana HOM05D007361 ORTHO05D009239 2.2e-33 146.0 138 57.2
Aa31LG9G130 Aethionema arabicum HOM05D007361 ORTHO05D009239 2.5e-32 142.5 69 89.9
Aqoxy5G04283 Aquilegia oxysepala HOM05D007361 ORTHO05D009239 3.2e-32 142.1 154 53.9
Potri.001G089500 Populus trichocarpa HOM05D007361 ORTHO05D009239 1.6e-31 139.8 137 54.0
AUR62019861 Chenopodium quinoa HOM05D007361 ORTHO05D009239 2.7e-31 139.0 100 66.0
GSVIVG01019560001 Vitis vinifera HOM05D007361 ORTHO05D009239 3.6e-31 138.7 106 65.1
Potri.003G141700 Populus trichocarpa HOM05D007361 ORTHO05D009239 1.4e-30 136.7 79 77.2
CANSAT21G1668 Cannabis sativa HOM05D007361 ORTHO05D009239 2.3e-30 136.0 93 66.7
Lalb_Chr09g0332251 Lupinus albus HOM05D007361 ORTHO05D009239 2.3e-30 136.0 71 84.5
Ah.12g052700 Amaranthus hybridus HOM05D007361 ORTHO05D009239 3.0e-30 135.6 86 73.3
Hund14207 Selenicereus undatus HOM05D007361 ORTHO05D009239 3.0e-30 135.6 114 58.8
Cpa.g.sc634.2 Carica papaya HOM05D007361 ORTHO05D009239 4.0e-30 135.2 91 69.2
CiPaw.12G081300 Carya illinoinensis HOM05D007361 ORTHO05D009239 4.0e-30 135.2 71 80.3
Sabra01G0065600 Salix brachista HOM05D007361 ORTHO05D009239 4.0e-30 135.2 81 75.3
Sc01g0010390 Simmondsia chinensis HOM05D007361 ORTHO05D009239 4.0e-30 135.2 94 66.0
QL02p030053 Quercus lobata HOM05D007361 ORTHO05D009239 5.2e-30 134.8 136 54.4
Eucgr.D01759 Eucalyptus grandis HOM05D007361 ORTHO05D009239 8.8e-30 134.0 70 84.3
PGR031G2691 Punica granatum HOM05D007361 ORTHO05D009239 8.8e-30 134.0 95 67.4
Sabra03G0102300 Salix brachista HOM05D007361 ORTHO05D009239 8.8e-30 134.0 71 84.5
HPP92_002926 Vanilla planifolia HOM05D007361 ORTHO05D009239 1.2e-29 133.7 69 82.6
arahy.Tifrunner.gnm1.ann1.F7VJVA Arachis hypogaea HOM05D007361 ORTHO05D009239 1.5e-29 133.3 72 79.2
Os01g0235100 Oryza sativa ssp. japonica HOM05D007361 ORTHO05D009239 1.5e-29 133.3 69 82.6
Prupe.5G122800 Prunus persica HOM05D007361 ORTHO05D009239 1.5e-29 133.3 136 52.2
Ciclev10024054m.g Citrus clementina HOM05D007361 ORTHO05D009239 3.3e-29 132.1 80 75.0
TAR629G1962 Trochodendron aralioides HOM05D007361 ORTHO05D009239 3.3e-29 132.1 95 63.2
arahy.Tifrunner.gnm1.ann1.LM2PGP Arachis hypogaea HOM05D007361 ORTHO05D009239 4.4e-29 131.7 72 79.2
Nn1g00257 Nelumbo nucifera HOM05D007361 ORTHO05D009239 4.4e-29 131.7 71 80.3
Glyma.08G024100 Glycine max HOM05D007361 ORTHO05D009239 5.7e-29 131.3 89 67.4
PSO782G1801 Papaver somniferum HOM05D007361 ORTHO05D009239 5.7e-29 131.3 97 64.9
Thecc.03G300700 Theobroma cacao HOM05D007361 ORTHO05D009239 5.7e-29 131.3 135 51.1
TWI60G0282 Tripterygium wilfordii HOM05D007361 ORTHO05D009239 5.7e-29 131.3 93 66.7
Medtr8g099615 Medicago truncatula HOM05D007361 ORTHO05D009239 7.5e-29 131.0 123 52.0
MELO3C016276.2 Cucumis melo HOM05D007361 ORTHO05D009239 9.7e-29 130.6 92 66.3
Lj4g0006418 Lotus japonicus HOM05D007361 ORTHO05D009239 1.3e-28 130.2 71 80.3
Actinidia27311 Actinidia chinensis HOM05D007361 ORTHO05D009239 1.7e-28 129.8 68 82.4
FvH4_5g04930 Fragaria vesca HOM05D007361 ORTHO05D009239 1.7e-28 129.8 68 80.9
FAN13G1516 Fragaria x ananassa HOM05D007361 ORTHO05D009239 1.7e-28 129.8 68 80.9
FAN18G1776 Fragaria x ananassa HOM05D007361 ORTHO05D009239 1.7e-28 129.8 68 80.9
FAN18G2902 Fragaria x ananassa HOM05D007361 ORTHO05D009239 1.7e-28 129.8 70 78.6
RcHm_v2.0_Chr7g0194141 Rosa chinensis HOM05D007361 ORTHO05D009239 2.2e-28 129.4 70 78.6
DCAR_006523 Daucus carota HOM05D007361 ORTHO05D009239 2.8e-28 129.0 104 58.7
Dinv37514 Davidia involucrata HOM05D007361 ORTHO05D009239 2.8e-28 129.0 71 77.5
Manes.01G052200 Manihot esculenta HOM05D007361 ORTHO05D009239 3.7e-28 128.6 92 67.4
TPR.G3427 Trifolium pratense HOM05D007361 ORTHO05D009239 3.7e-28 128.6 102 58.8
ClCG07G011490 Citrullus lanatus HOM05D007361 ORTHO05D009239 8.2e-28 127.5 96 62.5
Duzib205G2046 Durio zibethinus HOM05D007361 ORTHO05D009239 1.1e-27 127.1 68 80.9
TWI81G0394 Tripterygium wilfordii HOM05D007361 ORTHO05D009239 1.1e-27 127.1 109 57.8
Glyma.05G218000 Glycine max HOM05D007361 ORTHO05D009239 1.4e-27 126.7 122 54.9
Mapoly0039s0013 Marchantia polymorpha HOM05D007361 ORTHO05D009239 1.4e-27 126.7 107 56.1
CsaV3_4G006730 Cucumis sativus L. HOM05D007361 ORTHO05D009239 1.8e-27 126.3 146 52.1
SalBow8G1606 Salvia bowleyana HOM05D007361 ORTHO05D009239 2.4e-27 125.9 67 79.1
unitig_0.g323 Utricularia gibba HOM05D007361 ORTHO05D009239 2.4e-27 125.9 82 68.3
ATR0602G025 Amborella trichopoda HOM05D007361 ORTHO05D009239 3.1e-27 125.6 120 55.0
EL10Ac5g12938 Beta vulgaris HOM05D007361 ORTHO05D009239 3.1e-27 125.6 69 78.3
Peaxi162Scf00074g00624 Petunia axillaris HOM05D007361 ORTHO05D009239 3.1e-27 125.6 119 52.9
MSTRG.1799 Avicennia marina HOM05D007361 ORTHO05D009239 4.1e-27 125.2 112 53.6
Psat7g024200 Pisum sativum HOM05D007361 ORTHO05D009239 4.1e-27 125.2 126 51.6
Sed0017120 Sechium edule HOM05D007361 ORTHO05D009239 4.1e-27 125.2 74 73.0
SEGI_33878 Sequoiadendron giganteum HOM05D007361 ORTHO05D009239 4.1e-27 125.2 115 54.8
Gohir.D12G239000 Gossypium hirsutum HOM05D007361 ORTHO05D009239 5.3e-27 124.8 73 76.7
Gorai.008G256100 Gossypium raimondii HOM05D007361 ORTHO05D009239 5.3e-27 124.8 73 76.7
Lj2C163G16 Lonicera japonica HOM05D005144 ORTHO05D006112 5.3e-27 124.8 66 84.8
Phvul.002G299900 Phaseolus vulgaris HOM05D007361 ORTHO05D009239 5.3e-27 124.8 94 64.9
Atru.chr9.1927 Acer truncatum HOM05D001889 ORTHO05D009239 7.0e-27 124.4 85 65.9
Ca_17469_v3 Cicer arietinum L. HOM05D007361 ORTHO05D009239 7.0e-27 124.4 87 66.7
Gohir.A12G237900 Gossypium hirsutum HOM05D007361 ORTHO05D009239 7.0e-27 124.4 68 80.9
Nitab4.5_0000798g0080 Nicotiana tabacum HOM05D007361 ORTHO05D009239 7.0e-27 124.4 140 49.3
vmacro11341 Vaccinium macrocarpon HOM05D007361 ORTHO05D009239 7.0e-27 124.4 69 78.3
CSS0025387 Camellia sinensis var. sinensis HOM05D007361 ORTHO05D009239 1.6e-26 123.2 80 70.0
HanXRQChr17g0534961 Helianthus annuus HOM05D007361 ORTHO05D009239 1.6e-26 123.2 62 85.5
CDE10G0162 Ceratophyllum demersum HOM05D007361 ORTHO05D009239 2.0e-26 122.9 74 70.3
CDE10G0255 Ceratophyllum demersum HOM05D007361 ORTHO05D009239 2.0e-26 122.9 74 70.3
Cc08_g16280 Coffea canephora HOM05D007361 ORTHO05D009239 2.0e-26 122.9 141 46.1
Haze_09090 Corylus avellana HOM05D007361 ORTHO05D009239 2.0e-26 122.9 81 69.1
Migut.E01281 Erythranthe guttata HOM05D007361 ORTHO05D009239 3.5e-26 122.1 99 60.6
Solyc08g082570.4 Solanum lycopersicum HOM05D007361 ORTHO05D009239 3.5e-26 122.1 103 58.3
Actinidia22174 Actinidia chinensis HOM05D005144 ORTHO05D006112 4.5e-26 121.7 66 80.3
ECA246G3595 Erigeron canadensis HOM05D007361 ORTHO05D009239 5.9e-26 121.3 73 76.7
PGSC0003DMG400012265 Solanum tuberosum HOM05D007361 ORTHO05D009239 5.9e-26 121.3 70 74.3
AagrBONN_evm.TU.Sc2ySwM_362.1194 Anthoceros agrestis HOM05D007361 ORTHO05D009239 1.0e-25 120.6 64 79.7
Sopen08g030820 Solanum pennellii HOM05D007361 ORTHO05D009239 1.0e-25 120.6 70 72.9
SGA_v2.0_scaffold111G31398 Striga asiatica HOM05D007361 ORTHO05D009239 1.3e-25 120.2 90 60.0
CAN.G567.14 Capsicum annuum HOM05D007361 ORTHO05D009239 1.7e-25 119.8 70 74.3
Nitab4.5_0008496g0040 Nicotiana tabacum HOM05D007361 ORTHO05D009239 3.8e-25 118.6 65 76.9
Pp3c20_23090 Physcomitrium patens HOM05D007361 ORTHO05D009239 3.2e-24 115.5 66 74.2
Rhsim02G0246000 Rhododendron simsii HOM05D007361 ORTHO05D009239 3.2e-24 115.5 68 73.5
SMO340G0222 Selaginella moellendorffii HOM05D007361 ORTHO05D009239 2.7e-23 112.5 71 70.4
CBR_g8730 Chara braunii HOM05D003343 ORTHO05D003787 1.8e-19 99.8 89 51.7
Lsat_1_v5_gn_3_11260 Lactuca sativa HOM05D007361 ORTHO05D009239 7.0e-19 97.8 52 80.8
MCO14G090 Micromonas commoda HOM05D007361 ORTHO05D009239 1.0e-14 84.0 63 54.0
Cre02.g074100 Chlamydomonas reinhardtii HOM05D007361 ORTHO05D009239 2.3e-14 82.8 70 51.4
PRCOL_00001131 Prasinoderma coloniale HOM05D007361 ORTHO05D009239 6.1e-07 58.2 49 49.0


User provided reference genes

Program Settings