Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p49300 Brassica napus HOM05D000065 ORTHO05D033098 3.6e-27 124.0 56 100.0
BolC4t26515H Brassica oleracea HOM05D000065 ORTHO05D033098 3.6e-27 124.0 56 100.0
BraA07t29786Z Brassica rapa HOM05D000065 ORTHO05D010113 7.8e-14 79.7 47 80.9
A07p21000 Brassica napus HOM05D000065 ORTHO05D010113 2.3e-13 78.2 47 78.7
BcaB02g07871 Brassica carinata HOM05D000065 ORTHO05D010113 5.0e-13 77.0 47 78.7
BcaNung06857 Brassica carinata HOM05D000065 ORTHO05D010113 5.0e-13 77.0 47 78.7
AL7G47330 Arabidopsis lyrata HOM05D000065 ORTHO05D010113 8.6e-13 76.3 47 78.7
AT5G41890 Arabidopsis thaliana HOM05D000065 ORTHO05D010113 8.6e-13 76.3 47 78.7
C06p20310 Brassica napus HOM05D000065 ORTHO05D010113 8.6e-13 76.3 47 76.6
BolC6t37211H Brassica oleracea HOM05D000065 ORTHO05D010113 8.6e-13 76.3 47 76.6
Thhalv10027796m.g Eutrema salsugineum HOM05D000065 ORTHO05D010113 1.5e-12 75.5 47 76.6
CARHR212670 Cardamine hirsuta HOM05D000065 ORTHO05D010113 1.9e-12 75.1 47 76.6
BcaC08g44564 Brassica carinata HOM05D000065 ORTHO05D010113 2.5e-12 74.7 47 74.5
Sp7g00220 Schrenkiella parvula HOM05D000065 ORTHO05D010113 3.3e-12 74.3 47 76.6
Carub.0007s3347 Capsella rubella HOM05D000065 ORTHO05D010113 4.3e-12 73.9 47 74.5
Aa31LG9G270 Aethionema arabicum HOM05D000065 ORTHO05D010113 1.1e-10 69.3 46 67.4
Haze_09182 Corylus avellana HOM05D000065 ORTHO05D010113 1.3e-08 62.4 46 58.7
MELO3C005788.2 Cucumis melo HOM05D000065 ORTHO05D010113 1.3e-08 62.4 43 62.8
Prupe.5G130900 Prunus persica HOM05D000065 ORTHO05D010113 1.3e-08 62.4 46 60.9
ClCG01G001490 Citrullus lanatus HOM05D000065 ORTHO05D010113 1.7e-08 62.0 46 60.9
Ca_21438_v3 Cicer arietinum L. HOM05D000065 ORTHO05D001606 2.2e-08 61.6 50 60.0
MBI04_g22381_MAGBIO Magnolia biondii HOM05D000065 ORTHO05D010113 2.2e-08 61.6 43 62.8
MBI04_g25323_MAGBIO Magnolia biondii HOM05D000065 ORTHO05D010113 2.2e-08 61.6 43 62.8
Sed0021760 Sechium edule HOM05D000065 ORTHO05D010113 2.9e-08 61.2 43 62.8
EL10Ac5g12417 Beta vulgaris HOM05D000065 ORTHO05D010113 3.7e-08 60.8 43 60.5
CsaV3_5G001640 Cucumis sativus L. HOM05D000065 ORTHO05D033098 3.7e-08 60.8 41 63.4
FAN08G3417 Fragaria x ananassa HOM05D000065 ORTHO05D010113 3.7e-08 60.8 43 60.5
FvH4_5g10830 Fragaria vesca HOM05D000065 ORTHO05D010113 4.9e-08 60.5 43 60.5
FAN18G3643 Fragaria x ananassa HOM05D000065 ORTHO05D010113 4.9e-08 60.5 43 60.5
RcHm_v2.0_Chr7g0187331 Rosa chinensis HOM05D000065 ORTHO05D010113 4.9e-08 60.5 43 60.5
CiPaw.11G111600 Carya illinoinensis HOM05D000065 ORTHO05D010113 6.4e-08 60.1 43 60.5
QL02p027774 Quercus lobata HOM05D000065 ORTHO05D010113 6.4e-08 60.1 43 62.8
Cc08_g16810 Coffea canephora HOM05D000065 ORTHO05D010113 8.3e-08 59.7 45 55.6
Lj2C156G14 Lonicera japonica HOM05D000065 ORTHO05D010113 8.3e-08 59.7 47 59.6
Hma1.2p1_0013F.1_g008470 Hydrangea macrophylla HOM05D000065 ORTHO05D001606 1.1e-07 59.3 47 53.2
Lj6C691G9 Lonicera japonica HOM05D000065 ORTHO05D001606 1.1e-07 59.3 48 58.3
MD06G1120400 Malus domestica HOM05D000065 ORTHO05D010113 1.1e-07 59.3 43 58.1
AUR62007062 Chenopodium quinoa HOM05D000065 ORTHO05D010113 1.4e-07 58.9 43 60.5
Gohir.A12G240600 Gossypium hirsutum HOM05D000065 ORTHO05D010113 1.4e-07 58.9 43 60.5
Thecc.03G220000 Theobroma cacao HOM05D000065 ORTHO05D010113 1.4e-07 58.9 43 60.5
COL.COLO4_10806 Corchorus olitorius HOM05D000065 ORTHO05D010113 1.9e-07 58.5 43 60.5
Gohir.D12G241900 Gossypium hirsutum HOM05D000065 ORTHO05D010113 1.9e-07 58.5 43 60.5
Gorai.008G259200 Gossypium raimondii HOM05D000065 ORTHO05D010113 1.9e-07 58.5 43 60.5
Lj6g0006151 Lotus japonicus HOM05D000065 ORTHO05D001606 1.9e-07 58.5 53 54.7
Potri.008G104600 Populus trichocarpa HOM05D000065 ORTHO05D001606 1.9e-07 58.5 53 54.7
CANSAT21G2598 Cannabis sativa HOM05D000065 ORTHO05D010113 2.4e-07 58.2 47 55.3
CARHR222600 Cardamine hirsuta HOM05D000065 ORTHO05D001606 2.4e-07 58.2 56 51.8
Nitab4.5_0005544g0010 Nicotiana tabacum HOM05D000065 ORTHO05D010113 2.4e-07 58.2 45 55.6
vmacro13846 Vaccinium macrocarpon HOM05D000065 ORTHO05D010113 2.4e-07 58.2 43 60.5
CANSAT64G2127 Cannabis sativa HOM05D000065 ORTHO05D001606 3.2e-07 57.8 53 50.9
AUR62019927 Chenopodium quinoa HOM05D000065 ORTHO05D010113 3.2e-07 57.8 43 60.5
Aqoxy5G01414 Aquilegia oxysepala HOM05D000065 ORTHO05D001606 4.1e-07 57.4 57 49.1
CAN.G792.22 Capsicum annuum HOM05D000065 ORTHO05D010113 4.1e-07 57.4 45 53.3
Ciclev10005252m.g Citrus clementina HOM05D000065 ORTHO05D001606 4.1e-07 57.4 53 52.8
QL06p012090 Quercus lobata HOM05D000065 ORTHO05D001606 4.1e-07 57.4 56 53.6
QL06p012431 Quercus lobata HOM05D000065 ORTHO05D001606 4.1e-07 57.4 56 53.6
Rhsim02G0003400 Rhododendron simsii HOM05D000065 ORTHO05D001606 4.1e-07 57.4 53 52.8
TAR375G0430 Trochodendron aralioides HOM05D000065 ORTHO05D010113 4.1e-07 57.4 43 55.8
Cpa.g.sc15.147 Carica papaya HOM05D000065 ORTHO05D010113 5.4e-07 57.0 43 60.5
CDE04G2968 Ceratophyllum demersum HOM05D000065 ORTHO05D001606 5.4e-07 57.0 57 47.4
TWI60G1665 Tripterygium wilfordii HOM05D000065 ORTHO05D010113 5.4e-07 57.0 43 60.5
PSO541G1121 Papaver somniferum HOM05D000065 ORTHO05D010113 7.0e-07 56.6 43 55.8
SEGI_34329 Sequoiadendron giganteum HOM05D000065 ORTHO05D001606 7.0e-07 56.6 57 47.4
ATR0579G169 Amborella trichopoda HOM05D000065 ORTHO05D010113 9.2e-07 56.2 44 59.1
EL10Ac3g05519 Beta vulgaris HOM05D000065 ORTHO05D001606 9.2e-07 56.2 48 54.2
CANSAT64G2849 Cannabis sativa HOM05D000065 ORTHO05D001606 9.2e-07 56.2 47 48.9
Dinv05052 Davidia involucrata HOM05D000065 ORTHO05D010113 9.2e-07 56.2 43 58.1
Migut.A01073 Erythranthe guttata HOM05D000065 ORTHO05D010113 9.2e-07 56.2 52 48.1
Manes.01G002700 Manihot esculenta HOM05D000065 ORTHO05D010113 9.2e-07 56.2 43 58.1
QL06p043809 Quercus lobata HOM05D000065 ORTHO05D001606 9.2e-07 56.2 60 46.7
Sc22g0004670 Simmondsia chinensis HOM05D000065 ORTHO05D010113 9.2e-07 56.2 45 53.3
vmacro15179 Vaccinium macrocarpon HOM05D000065 ORTHO05D001606 9.2e-07 56.2 53 52.8
Ah.13g071290 Amaranthus hybridus HOM05D000065 ORTHO05D001606 1.2e-06 55.8 53 49.1
arahy.Tifrunner.gnm1.ann1.6P44XN Arachis hypogaea HOM05D000065 ORTHO05D001606 1.2e-06 55.8 62 46.8
Duzib068G0610 Durio zibethinus HOM05D000065 ORTHO05D010113 1.2e-06 55.8 54 48.1
Rhsim07G0077400 Rhododendron simsii HOM05D000065 ORTHO05D010113 1.2e-06 55.8 43 55.8
Thecc.04G302000 Theobroma cacao HOM05D000065 ORTHO05D001606 1.2e-06 55.8 53 52.8
MSTRG.3855 Avicennia marina HOM05D000065 ORTHO05D001606 1.6e-06 55.5 47 53.2
Haze_01363 Corylus avellana HOM05D000065 ORTHO05D001606 1.6e-06 55.5 51 51.0
Lj4g0007187 Lotus japonicus HOM05D000065 ORTHO05D001606 1.6e-06 55.5 52 53.8
Os04g0577300 Oryza sativa ssp. japonica HOM05D000065 ORTHO05D010113 1.6e-06 55.5 43 55.8
PSO541G5469 Papaver somniferum HOM05D000065 ORTHO05D001606 1.6e-06 55.5 47 53.2
Sp7g14730 Schrenkiella parvula HOM05D000065 ORTHO05D001606 1.6e-06 55.5 56 50.0
TPR.G25440 Trifolium pratense HOM05D000065 ORTHO05D001606 1.6e-06 55.5 48 54.2
MSTRG.3407 Avicennia marina HOM05D000065 ORTHO05D001606 2.1e-06 55.1 57 49.1
BcaNung06743 Brassica carinata HOM05D000065 ORTHO05D001606 2.1e-06 55.1 56 50.0
Cfa015306 Carpinus fangiana HOM05D000065 ORTHO05D001606 2.1e-06 55.1 51 51.0
Haze_01309 Corylus avellana HOM05D000065 ORTHO05D001606 2.1e-06 55.1 53 50.9
Eucgr.A00381 Eucalyptus grandis HOM05D000065 ORTHO05D001606 2.1e-06 55.1 47 51.1
Oeu032934.1 Olea europaea HOM05D000065 ORTHO05D001606 2.1e-06 55.1 57 49.1
SalBow1G8016 Salvia bowleyana HOM05D000065 ORTHO05D001606 2.1e-06 55.1 57 49.1
Zm00001eb428520 Zea mays HOM05D000065 ORTHO05D010113 2.1e-06 55.1 44 54.5
arahy.Tifrunner.gnm1.ann1.T8EPYL Arachis hypogaea HOM05D000065 ORTHO05D001606 2.7e-06 54.7 57 49.1
arahy.Tifrunner.gnm1.ann1.W09UQK Arachis hypogaea HOM05D000065 ORTHO05D001606 2.7e-06 54.7 57 49.1
A03p49720 Brassica napus HOM05D000065 ORTHO05D001606 2.7e-06 54.7 56 50.0
C07p47760 Brassica napus HOM05D000065 ORTHO05D001606 2.7e-06 54.7 56 50.0
BolC7t45301H Brassica oleracea HOM05D000065 ORTHO05D001606 2.7e-06 54.7 56 50.0
CANSAT64G1186 Cannabis sativa HOM05D000065 ORTHO05D001606 2.7e-06 54.7 49 46.9
Duzib052G0819 Durio zibethinus HOM05D000065 ORTHO05D001606 2.7e-06 54.7 57 49.1
Eucgr.H01970 Eucalyptus grandis HOM05D000065 ORTHO05D001606 2.7e-06 54.7 57 47.4
Lsat_1_v5_gn_6_9241 Lactuca sativa HOM05D000065 ORTHO05D010113 2.7e-06 54.7 51 45.1
MBI16_g31474_MAGBIO Magnolia biondii HOM05D000065 ORTHO05D001606 2.7e-06 54.7 57 47.4
PSO675G3820 Papaver somniferum HOM05D000065 ORTHO05D010113 2.7e-06 54.7 43 53.5
RcHm_v2.0_Chr2g0103741 Rosa chinensis HOM05D000065 ORTHO05D001606 2.7e-06 54.7 53 49.1
SGA_v2.0_scaffold104G30072 Striga asiatica HOM05D000065 ORTHO05D001606 2.7e-06 54.7 48 52.1
Actinidia36521 Actinidia chinensis HOM05D000065 ORTHO05D001606 3.5e-06 54.3 57 45.6
Ah.12g053260 Amaranthus hybridus HOM05D000065 ORTHO05D010113 3.5e-06 54.3 43 55.8
Aqoxy6G02289 Aquilegia oxysepala HOM05D000065 ORTHO05D001606 3.5e-06 54.3 56 48.2
Cpa.g.sc1620.2 Carica papaya HOM05D000065 ORTHO05D001606 3.5e-06 54.3 57 47.4
Ciclev10025863m.g Citrus clementina HOM05D000065 ORTHO05D001606 3.5e-06 54.3 57 49.1
COL.COLO4_30975 Corchorus olitorius HOM05D000065 ORTHO05D001606 3.5e-06 54.3 53 49.1
FAN19G2479 Fragaria x ananassa HOM05D000065 ORTHO05D001606 3.5e-06 54.3 53 47.2
HanXRQChr16g0504051 Helianthus annuus HOM05D000065 ORTHO05D010113 3.5e-06 54.3 52 40.4
Oeu059530.1 Olea europaea HOM05D000065 ORTHO05D001606 3.5e-06 54.3 47 46.8
QL06p012131 Quercus lobata HOM05D000065 ORTHO05D001606 3.5e-06 54.3 46 52.2
HPP92_014518 Vanilla planifolia HOM05D000065 ORTHO05D001606 3.5e-06 54.3 61 44.3
AT4G16233 Arabidopsis thaliana HOM05D000065 ORTHO05D001606 4.6e-06 53.9 50 48.0
BraA03t14070Z Brassica rapa HOM05D000065 ORTHO05D001606 4.6e-06 53.9 56 50.0
CANSAT01G1781 Cannabis sativa HOM05D000065 ORTHO05D001606 4.6e-06 53.9 57 47.4
Gorai.011G200700 Gossypium raimondii HOM05D000065 ORTHO05D001606 4.6e-06 53.9 57 47.4
Lj7A18T45 Lonicera japonica HOM05D000065 ORTHO05D001606 4.6e-06 53.9 57 45.6
Lj7A20T62 Lonicera japonica HOM05D000065 ORTHO05D001606 4.6e-06 53.9 57 45.6
Lalb_Chr16g0388471 Lupinus albus HOM05D000065 ORTHO05D001606 4.6e-06 53.9 57 49.1
Manes.03G205600 Manihot esculenta HOM05D000065 ORTHO05D001606 4.6e-06 53.9 52 48.1
Nitab4.5_0000673g0220 Nicotiana tabacum HOM05D000065 ORTHO05D010113 4.6e-06 53.9 43 53.5
Oeu010738.1 Olea europaea HOM05D000065 ORTHO05D010113 4.6e-06 53.9 43 55.8
Psat4g089560 Pisum sativum HOM05D000065 ORTHO05D001606 4.6e-06 53.9 57 49.1
Potri.007G036300 Populus trichocarpa HOM05D000065 ORTHO05D001606 4.6e-06 53.9 57 49.1
PGR102G1176 Punica granatum HOM05D000065 ORTHO05D001606 4.6e-06 53.9 57 47.4
Sc07g0000120 Simmondsia chinensis HOM05D000065 ORTHO05D001606 4.6e-06 53.9 57 47.4
TAR362G0088 Trochodendron aralioides HOM05D000065 ORTHO05D001606 4.6e-06 53.9 47 51.1
Carub.0007s2530 Capsella rubella HOM05D000065 ORTHO05D001606 6.0e-06 53.5 51 51.0
AUR62016218 Chenopodium quinoa HOM05D000065 ORTHO05D001606 6.0e-06 53.5 43 55.8
Thhalv10027022m.g Eutrema salsugineum HOM05D000065 ORTHO05D001606 6.0e-06 53.5 56 48.2
FvH4_1g14780 Fragaria vesca HOM05D000065 ORTHO05D001606 6.0e-06 53.5 53 47.2
FAN23G2005 Fragaria x ananassa HOM05D000065 ORTHO05D001606 6.0e-06 53.5 53 47.2
FAN26G2797 Fragaria x ananassa HOM05D000065 ORTHO05D001606 6.0e-06 53.5 53 47.2
FAN28G0521 Fragaria x ananassa HOM05D000065 ORTHO05D001606 6.0e-06 53.5 53 47.2
Gohir.D10G179400 Gossypium hirsutum HOM05D000065 ORTHO05D001606 6.0e-06 53.5 57 45.6
HanXRQChr05g0146021 Helianthus annuus HOM05D000065 ORTHO05D001606 6.0e-06 53.5 48 54.2
MBI16_g19894_MAGBIO Magnolia biondii HOM05D000065 ORTHO05D001606 6.0e-06 53.5 57 47.4
Manes.13G130400 Manihot esculenta HOM05D000065 ORTHO05D001606 6.0e-06 53.5 57 47.4
PSO063G0408 Papaver somniferum HOM05D000065 ORTHO05D001606 6.0e-06 53.5 48 56.2
Peaxi162Scf01257g00016 Petunia axillaris HOM05D000065 ORTHO05D010113 6.0e-06 53.5 44 52.3
Sc13g0006450 Simmondsia chinensis HOM05D000065 ORTHO05D001606 6.0e-06 53.5 43 53.5
THA.LOC104827086 Tarenaya hassleriana HOM05D000065 ORTHO05D001606 6.0e-06 53.5 61 45.9
GSVIVG01005081001 Vitis vinifera HOM05D000065 ORTHO05D001606 6.0e-06 53.5 57 47.4
GSVIVG01019662001 Vitis vinifera HOM05D000065 ORTHO05D010113 6.0e-06 53.5 40 55.0
AT3G50400 Arabidopsis thaliana HOM05D000065 ORTHO05D001606 7.8e-06 53.1 61 45.9
CSS0011855 Camellia sinensis var. sinensis HOM05D000065 ORTHO05D010113 7.8e-06 53.1 43 55.8
CSS0021254 Camellia sinensis var. sinensis HOM05D000065 ORTHO05D010113 7.8e-06 53.1 43 55.8
ClCG02G013150 Citrullus lanatus HOM05D000065 ORTHO05D001606 7.8e-06 53.1 59 45.8
DCAR_023368 Daucus carota HOM05D000065 ORTHO05D001606 7.8e-06 53.1 51 47.1
DCAR_025686 Daucus carota HOM05D000065 ORTHO05D001606 7.8e-06 53.1 57 47.4
DCAR_030469 Daucus carota HOM05D000065 ORTHO05D001606 7.8e-06 53.1 47 48.9
Oeu004891.1 Olea europaea HOM05D000065 ORTHO05D001606 7.8e-06 53.1 57 47.4


User provided reference genes

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