Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 9.7e-272 939.5 458 100.0
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 9.7e-272 939.5 458 100.0
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 3.5e-269 931.0 458 99.6
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 2.3e-265 918.3 458 97.4
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 6.3e-263 910.2 458 96.5
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.1e-251 872.8 460 93.0
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 1.2e-245 852.8 460 91.5
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.6e-242 842.4 462 89.2
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 3.6e-242 841.3 469 88.5
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 7.5e-240 833.6 458 89.5
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 9.5e-235 816.6 459 87.8
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 2.8e-234 815.1 458 87.3
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.4e-233 812.8 458 87.1
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 4.4e-232 807.7 458 86.5
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 3.0e-228 795.0 488 83.2
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 1.6e-218 762.7 403 93.1
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 6.2e-210 734.2 472 76.9
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 2.7e-205 718.8 422 82.0
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 2.0e-200 702.6 479 77.9
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 5.1e-188 661.4 462 68.6
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 7.4e-187 657.5 470 66.8
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 2.1e-186 656.0 458 67.2
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 2.8e-186 655.6 454 68.3
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 4.8e-186 654.8 458 67.0
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 2.0e-184 649.4 459 67.3
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 3.4e-184 648.7 464 66.4
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 4.5e-184 648.3 461 66.2
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 4.5e-184 648.3 460 67.6
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 5.9e-184 647.9 458 67.7
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 5.9e-184 647.9 460 66.1
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 1.3e-183 646.7 463 67.2
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 2.2e-183 646.0 465 66.0
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.9e-183 645.6 458 65.5
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 2.9e-183 645.6 462 66.9
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 6.5e-183 644.4 458 66.8
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 3.2e-182 642.1 458 65.1
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 5.5e-182 641.3 461 65.3
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 1.6e-181 639.8 452 67.5
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 1.8e-180 636.3 458 66.6
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.8e-180 636.3 461 64.4
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.8e-180 636.3 461 64.4
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 8.7e-180 634.0 459 64.9
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 3.3e-179 632.1 462 63.6
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 7.4e-179 630.9 462 64.7
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 1.3e-178 630.2 462 63.6
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 4.8e-178 628.2 461 64.6
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 8.2e-178 627.5 457 64.8
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 1.8e-177 626.3 461 65.1
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 2.4e-177 625.9 462 63.2
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 3.1e-177 625.5 430 67.9
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 5.3e-177 624.8 458 65.9
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 1.2e-176 623.6 458 64.0
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 1.5e-176 623.2 461 63.8
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 2.6e-176 622.5 440 67.0
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 3.4e-176 622.1 439 66.7
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.0e-175 620.5 434 67.3
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.0e-175 620.5 439 66.3
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.7e-175 619.8 433 67.7
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.7e-175 619.8 450 64.9
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 2.2e-175 619.4 462 63.0
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 2.9e-175 619.0 437 67.7
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 3.8e-175 618.6 462 64.5
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 6.5e-175 617.8 430 68.8
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.1e-174 617.1 462 65.2
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 5.1e-172 608.2 462 62.6
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.1e-171 607.1 463 62.6
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.5e-171 606.7 463 62.9
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 4.4e-171 605.1 463 62.6
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 5.7e-171 604.7 459 63.0
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 9.7e-171 604.0 463 63.3
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 4.8e-170 601.7 456 63.4
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 2.4e-169 599.4 445 65.2
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.2e-168 597.0 431 66.4
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.0e-168 596.3 460 62.0
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 2.6e-168 595.9 442 65.4
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 4.5e-168 595.1 467 62.1
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 5.9e-168 594.7 458 64.0
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.2e-167 592.8 461 62.0
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 2.2e-167 592.8 448 62.9
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 8.5e-167 590.9 452 62.8
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 8.5e-167 590.9 425 67.1
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.2e-166 589.0 469 62.3
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 4.2e-166 588.6 478 60.0
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 5.5e-166 588.2 458 61.6
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 9.4e-166 587.4 444 62.6
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.6e-165 585.5 470 62.1
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 3.6e-165 585.5 433 63.3
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 6.1e-165 584.7 458 61.4
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.0e-164 582.4 445 63.6
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.2e-164 581.6 446 63.9
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 2.0e-163 579.7 438 63.5
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 6.3e-162 574.7 455 62.9
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.2e-160 570.5 396 66.7
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.3e-159 567.0 408 65.4
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 9.4e-158 560.8 499 57.1
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 3.6e-157 558.9 463 60.3
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 6.1e-157 558.1 489 58.1
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.0e-157 557.8 458 60.7
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 1.4e-156 557.0 464 61.0
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.5e-155 553.5 464 58.4
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 2.6e-155 552.7 471 58.2
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 6.3e-154 548.1 433 59.4
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.7e-151 540.0 444 59.2
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.5e-150 536.2 438 59.1
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 4.0e-148 528.9 397 63.5
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.0e-147 526.6 367 65.7
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 2.2e-146 523.1 384 63.8
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 9.1e-145 517.7 382 66.5
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 5.9e-144 515.0 450 52.9
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 2.3e-143 513.1 460 53.3
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.2e-141 507.3 462 54.5
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.2e-141 507.3 443 57.1
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 3.6e-141 505.8 430 54.2
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.1e-137 494.2 545 50.1
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 8.6e-135 484.6 477 53.5
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 2.8e-133 479.6 341 66.9
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 4.4e-123 445.7 354 60.5
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 7.3e-118 428.3 433 52.4
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.2e-115 421.0 347 57.9
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 3.4e-115 419.5 347 57.9
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 1.7e-111 407.1 292 67.1
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 6.6e-111 405.2 460 47.8
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 9.2e-105 384.8 292 62.0
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 2.4e-100 370.2 375 47.2
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.4e-99 366.3 414 49.3
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.4e-99 366.3 461 46.6
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 2.1e-93 347.1 264 62.9
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 6.2e-93 345.5 343 52.8
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 9.9e-91 338.2 461 42.3
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 3.2e-81 306.6 393 40.5
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 2.0e-75 287.3 207 64.7
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 8.7e-71 271.9 281 50.5
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 3.3e-70 270.0 216 62.5
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.6e-64 251.1 258 59.3
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.6e-64 249.6 256 59.0
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 6.7e-63 245.7 175 65.7
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.0e-51 207.6 256 53.1
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 2.7e-48 197.2 216 45.8
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 8.0e-48 195.7 118 72.0
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 2.3e-47 194.1 252 46.0
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 2.3e-47 194.1 214 53.7
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 9.7e-38 162.2 157 52.2
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.2e-32 145.2 234 38.0
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 1.6e-32 144.8 111 64.0
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.3e-31 141.0 86 82.6
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 5.2e-31 139.8 107 59.8
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-30 138.7 99 63.6
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 2.4e-28 131.0 201 39.3
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 1.7e-18 98.2 60 73.3
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.1e-17 95.5 130 40.0
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 3.6e-16 90.5 92 48.9
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-14 85.5 70 54.3
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.9e-09 68.2 79 48.1
BolC6t37210H Brassica oleracea HOM05D004439 ORTHO05D043038 1.6e-08 65.1 43 69.8
BraA07t29785Z Brassica rapa HOM05D004439 ORTHO05D043038 3.6e-08 63.9 40 75.0
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.4e-07 62.0 42 61.9
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.8e-07 61.6 33 75.8
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 4.4e-06 57.0 84 41.7


User provided reference genes

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