Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 6.4e-31 136.7 67 100.0
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 1.9e-30 135.2 67 98.5
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 1.9e-30 135.2 67 98.5
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 1.9e-30 135.2 67 98.5
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 1.9e-30 135.2 67 98.5
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 7.1e-30 133.3 67 97.0
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 9.3e-30 132.9 67 97.0
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 1.9e-27 125.2 67 89.6
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 4.3e-27 124.0 67 94.0
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 4.3e-27 124.0 67 94.0
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 2.8e-26 121.3 61 96.7
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 8.1e-26 119.8 67 91.0
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 2.6e-24 114.8 66 86.4
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 2.2e-23 111.7 64 81.2
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-23 111.3 66 81.8
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 8.4e-23 109.8 66 80.3
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 1.9e-22 108.6 66 81.8
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 2.1e-21 105.1 66 78.8
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 4.6e-21 104.0 65 78.5
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 6.0e-21 103.6 70 71.4
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 7.9e-21 103.2 70 72.9
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.0e-20 102.8 70 70.0
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-20 102.4 50 94.0
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 2.3e-20 101.7 65 75.4
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.3e-20 101.7 59 76.3
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 3.9e-20 100.9 50 94.0
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 6.7e-20 100.1 70 71.4
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.5e-19 99.0 50 90.0
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 1.9e-19 98.6 62 75.8
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 2.5e-19 98.2 49 91.8
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.5e-19 98.2 50 88.0
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 9.6e-19 96.3 70 70.0
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 9.6e-19 96.3 63 71.4
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 9.6e-19 96.3 63 71.4
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.3e-18 95.9 67 70.1
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.3e-18 95.9 65 72.3
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 2.1e-18 95.1 63 73.0
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 2.1e-18 95.1 63 73.0
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 2.1e-18 95.1 63 73.0
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 2.1e-18 95.1 63 73.0
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 2.1e-18 95.1 63 73.0
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 2.8e-18 94.7 63 71.4
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 2.8e-18 94.7 64 68.8
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.8e-18 94.7 69 62.3
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.8e-18 94.7 69 63.8
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.6e-18 94.4 63 69.8
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.6e-18 94.4 64 68.8
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.6e-18 94.4 64 68.8
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 3.6e-18 94.4 64 68.8
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.6e-18 94.4 70 67.1
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 4.8e-18 94.0 64 68.8
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 4.8e-18 94.0 69 69.6
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 6.2e-18 93.6 64 68.8
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 8.1e-18 93.2 68 64.7
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 8.1e-18 93.2 64 67.2
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 8.1e-18 93.2 67 67.2
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 8.1e-18 93.2 67 62.7
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 8.1e-18 93.2 63 68.3
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 8.1e-18 93.2 68 70.6
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 8.1e-18 93.2 64 71.9
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.1e-17 92.8 68 69.1
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 1.1e-17 92.8 66 66.7
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 1.1e-17 92.8 69 66.7
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.4e-17 92.4 70 65.7
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.4e-17 92.4 61 68.9
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 1.4e-17 92.4 68 67.6
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.8e-17 92.0 50 84.0
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 1.8e-17 92.0 68 64.7
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 2.4e-17 91.7 69 65.2
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 2.4e-17 91.7 69 65.2
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 3.1e-17 91.3 64 65.6
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 4.0e-17 90.9 69 66.7
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 5.3e-17 90.5 68 64.7
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 6.9e-17 90.1 69 63.8
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 6.9e-17 90.1 68 66.2
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 9.0e-17 89.7 65 63.1
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 9.0e-17 89.7 68 63.2
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 9.0e-17 89.7 69 65.2
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 1.2e-16 89.4 70 65.7
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.2e-16 89.4 60 68.3
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 1.5e-16 89.0 68 64.7
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 2.0e-16 88.6 64 64.1
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 2.0e-16 88.6 68 63.2
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 2.0e-16 88.6 68 63.2
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 2.0e-16 88.6 68 64.7
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 3.4e-16 87.8 68 63.2
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 4.5e-16 87.4 64 67.2
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 4.5e-16 87.4 69 63.8
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 4.5e-16 87.4 50 72.0
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 4.5e-16 87.4 75 57.3
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 5.8e-16 87.0 68 63.2
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 5.8e-16 87.0 64 67.2
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 7.6e-16 86.7 66 65.2
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 9.9e-16 86.3 64 60.9
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.3e-15 85.9 47 76.6
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.7e-15 85.5 67 61.2
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 1.7e-15 85.5 64 65.6
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.2e-15 85.1 68 60.3
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.2e-15 85.1 64 62.5
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 3.8e-15 84.3 69 60.9
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 3.8e-15 84.3 68 60.3
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 4.9e-15 84.0 62 67.7
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 4.9e-15 84.0 66 63.6
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 6.4e-15 83.6 61 59.0
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 8.4e-15 83.2 62 67.7
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 8.4e-15 83.2 60 61.7
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 1.1e-14 82.8 73 60.3
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.1e-14 82.8 69 59.4
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.1e-14 82.8 64 57.8
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 1.9e-14 82.0 62 61.3
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 4.2e-14 80.9 47 72.3
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 5.5e-14 80.5 45 80.0
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 9.3e-14 79.7 67 61.2
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 9.3e-14 79.7 69 56.5
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 9.3e-14 79.7 47 76.6
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 1.6e-13 79.0 61 62.3
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 2.1e-13 78.6 64 59.4
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.1e-13 78.6 73 53.4
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.1e-13 78.6 72 56.9
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 2.1e-13 78.6 73 53.4
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 2.7e-13 78.2 72 55.6
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 2.7e-13 78.2 75 57.3
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 2.7e-13 78.2 67 53.7
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.7e-13 78.2 72 54.2
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.7e-13 78.2 72 54.2
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 2.7e-13 78.2 47 72.3
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 2.7e-13 78.2 47 74.5
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 2.7e-13 78.2 72 55.6
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 2.7e-13 78.2 72 55.6
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.5e-13 77.8 72 55.6
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.5e-13 77.8 72 55.6
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 4.6e-13 77.4 70 50.0
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 6.0e-13 77.0 75 56.0
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 6.0e-13 77.0 72 54.2
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 6.0e-13 77.0 73 52.1
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.3e-12 75.9 65 55.4
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.3e-12 75.9 47 70.2
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.8e-12 75.5 64 56.2
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 5.1e-12 73.9 64 56.2
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.1e-11 72.8 54 61.1
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.5e-11 72.4 45 66.7
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.3e-10 69.3 44 65.9
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.6e-10 68.9 45 66.7
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 2.1e-10 68.6 55 60.0
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 4.8e-10 67.4 59 57.6
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.4e-09 65.9 42 61.9
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 3.1e-09 64.7 49 65.3
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 1.5e-08 62.4 52 59.6
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 1.7e-07 58.9 51 54.9
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 2.2e-07 58.5 50 54.0
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.2e-07 58.5 35 71.4
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.5e-06 55.1 43 60.5


User provided reference genes

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