Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 8.7e-148 526.9 265 100.0
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 2.7e-141 505.4 266 96.6
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 2.7e-141 505.4 266 96.6
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 9.4e-118 427.2 269 83.3
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 2.3e-116 422.5 270 83.0
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.5e-110 403.3 268 80.6
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 7.5e-107 391.0 265 77.7
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 7.5e-107 391.0 265 77.7
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 5.2e-92 341.7 265 72.1
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 3.1e-89 332.4 267 72.3
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 2.9e-82 309.3 265 67.5
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 1.4e-81 307.0 244 72.5
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 2.4e-81 306.2 270 68.1
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 7.0e-81 304.7 269 65.1
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 3.1e-68 262.7 266 61.7
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 7.1e-65 251.5 268 54.9
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 9.2e-57 224.6 280 50.0
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 1.6e-48 197.2 257 45.9
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.1e-48 196.8 257 45.9
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 4.6e-48 195.7 272 48.5
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 4.6e-48 195.7 257 45.5
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 4.0e-44 182.6 296 42.6
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.2e-43 181.0 247 45.7
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 1.5e-43 180.6 274 42.0
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 2.0e-43 180.3 268 44.8
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 9.9e-43 177.9 266 45.5
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 4.9e-42 175.6 243 44.4
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.4e-41 174.1 278 43.9
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 1.9e-41 173.7 260 43.8
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.7e-40 169.9 257 43.6
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 1.8e-39 167.2 294 39.8
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 3.0e-39 166.4 287 39.0
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 3.0e-39 166.4 281 41.6
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 8.7e-39 164.9 209 44.5
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 1.1e-38 164.5 267 43.4
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 1.5e-38 164.1 251 42.2
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 2.5e-38 163.3 268 43.3
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 2.5e-38 163.3 257 43.6
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.3e-38 162.5 279 39.1
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 4.3e-38 162.5 277 39.7
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 7.4e-38 161.8 274 38.7
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 7.4e-38 161.8 279 39.1
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 9.6e-38 161.4 276 40.9
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.6e-37 160.6 280 40.4
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 2.1e-37 160.2 262 43.1
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 4.8e-37 159.1 142 56.3
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 6.2e-37 158.7 305 38.7
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.4e-36 157.5 299 37.1
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 1.5e-35 154.1 303 38.9
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 2.0e-35 153.7 263 41.8
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.4e-35 152.9 273 40.7
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 4.5e-35 152.5 259 41.7
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 5.8e-35 152.1 272 40.4
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 5.8e-35 152.1 260 40.4
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 5.8e-35 152.1 265 42.6
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.0e-34 151.4 299 38.1
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 2.2e-34 150.2 264 36.0
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.2e-34 150.2 265 38.9
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 2.9e-34 149.8 270 39.6
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 3.8e-34 149.4 247 40.9
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 4.9e-34 149.1 276 39.1
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 4.9e-34 149.1 261 39.8
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.4e-34 148.3 279 37.3
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.9e-33 147.1 318 36.8
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 2.5e-33 146.7 276 36.6
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 2.5e-33 146.7 261 39.5
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 3.2e-33 146.4 311 35.7
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 5.5e-33 145.6 286 38.1
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 7.1e-33 145.2 295 40.0
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 7.1e-33 145.2 314 35.7
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 9.3e-33 144.8 263 38.4
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 9.3e-33 144.8 158 48.7
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.6e-32 144.1 299 34.8
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 1.6e-32 144.1 263 40.3
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 2.1e-32 143.7 266 35.7
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 3.5e-32 142.9 328 34.8
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 3.5e-32 142.9 270 39.3
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.5e-32 142.9 291 37.1
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 4.6e-32 142.5 158 48.1
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 6.0e-32 142.1 258 38.0
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 7.9e-32 141.7 289 38.1
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 1.0e-31 141.4 247 38.1
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 1.0e-31 141.4 139 55.4
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.8e-31 140.6 279 37.3
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 1.8e-31 140.6 292 32.9
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 1.8e-31 140.6 370 32.2
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.8e-31 140.6 333 33.3
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 3.9e-31 139.4 259 35.5
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 6.7e-31 138.7 313 35.5
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 8.7e-31 138.3 259 38.2
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.9e-30 137.1 279 35.1
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.5e-30 136.7 147 49.7
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 5.7e-30 135.6 277 36.8
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 5.7e-30 135.6 149 49.0
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 5.7e-30 135.6 354 31.4
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 7.4e-30 135.2 255 39.6
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 7.4e-30 135.2 140 52.9
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.3e-29 134.4 281 36.3
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 1.3e-29 134.4 309 35.9
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 3.7e-29 132.9 262 38.2
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 4.8e-29 132.5 308 35.4
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 6.2e-29 132.1 132 52.3
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 8.2e-29 131.7 326 34.4
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 8.2e-29 131.7 147 48.3
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.4e-28 131.0 252 37.7
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 1.4e-28 131.0 359 30.6
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.4e-28 131.0 214 41.1
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 2.4e-28 130.2 242 37.2
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 1.2e-27 127.9 145 49.0
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.0e-27 127.1 292 36.3
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 3.4e-27 126.3 139 50.4
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.5e-27 125.9 276 34.4
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 5.8e-27 125.6 252 36.5
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.0e-26 124.8 139 46.8
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.0e-26 124.8 212 38.2
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 1.3e-26 124.4 312 31.4
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 1.7e-26 124.0 307 33.9
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 1.7e-26 124.0 296 33.8
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 2.2e-26 123.6 281 34.5
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 2.9e-26 123.2 288 31.6
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 5.0e-26 122.5 346 32.1
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 2.5e-25 120.2 246 34.6
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.2e-25 119.8 163 46.0
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 4.2e-25 119.4 164 42.1
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 4.2e-25 119.4 245 38.8
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 9.3e-25 118.2 279 34.1
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.2e-24 117.9 163 44.8
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.6e-24 117.5 308 33.8
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 3.5e-24 116.3 115 50.4
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 3.5e-24 116.3 368 30.2
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 6.1e-24 115.5 285 29.8
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 1.5e-22 110.9 224 36.6
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 1.9e-22 110.5 269 34.6
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 2.5e-22 110.2 128 47.7
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 3.3e-22 109.8 311 29.6
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 7.4e-22 108.6 269 33.5
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 2.4e-20 103.6 230 36.1
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.9e-19 99.0 131 45.0
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 5.9e-19 99.0 240 32.1
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.3e-18 97.8 216 32.4
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 3.8e-18 96.3 293 29.4
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.5e-17 92.4 82 51.2
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 1.6e-16 90.9 263 32.7
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.6e-16 89.7 189 38.1
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 3.0e-15 86.7 222 36.0
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.9e-15 86.3 243 35.0
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 6.7e-15 85.5 85 56.5
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.1e-14 84.7 319 28.5
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.2e-13 80.5 243 28.4
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 7.7e-11 72.0 254 29.5
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.4e-09 67.8 131 37.4
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 9.4e-09 65.1 181 31.5
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.7e-08 63.5 71 45.1
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 7.9e-08 62.0 65 43.1
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.0e-07 61.6 108 35.2
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 5.1e-07 59.3 104 38.5
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 2.6e-06 57.0 73 47.9


User provided reference genes

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