Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 5.9e-211 737.3 371 100.0
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 7.3e-209 730.3 372 99.2
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 7.3e-209 730.3 372 99.2
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 1.7e-205 719.2 371 98.1
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 1.7e-205 719.2 371 98.1
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 3.7e-205 718.0 371 97.3
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 2.3e-199 698.7 373 96.0
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 1.9e-193 679.1 376 92.8
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 4.9e-189 664.5 374 91.4
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 8.6e-186 653.7 372 90.1
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 2.8e-184 648.7 372 89.5
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 2.4e-183 645.6 373 90.1
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 3.9e-178 628.2 381 86.4
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 6.0e-171 604.4 377 83.6
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 2.8e-160 568.9 388 78.1
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 3.0e-154 548.9 374 76.2
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 5.7e-153 544.7 375 76.8
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.1e-151 540.4 375 76.5
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 3.1e-151 538.9 350 79.7
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 2.0e-150 536.2 346 80.1
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 2.0e-150 536.2 350 79.4
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 3.4e-150 535.4 374 75.4
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 4.5e-150 535.0 375 76.0
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 3.8e-149 531.9 372 74.7
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 8.4e-149 530.8 374 74.9
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 5.5e-148 528.1 391 72.4
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 7.2e-148 527.7 375 75.2
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 1.6e-147 526.6 378 74.3
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 2.7e-147 525.8 374 74.1
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 4.6e-147 525.0 372 75.3
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 1.0e-146 523.9 378 73.5
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 1.3e-146 523.5 376 73.9
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 1.8e-146 523.1 381 72.7
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 3.9e-146 521.9 376 73.9
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 6.7e-146 521.2 376 74.5
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 8.7e-146 520.8 371 74.1
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 1.5e-145 520.0 373 75.1
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 5.7e-145 518.1 379 74.1
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 7.4e-145 517.7 365 75.3
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 1.6e-144 516.5 372 73.7
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 1.6e-144 516.5 372 73.7
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 2.8e-144 515.8 370 74.3
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 6.3e-144 514.6 375 72.8
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 8.2e-144 514.2 361 75.3
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 1.4e-143 513.5 376 72.6
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 4.1e-143 511.9 391 71.1
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 6.9e-143 511.1 385 72.7
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 9.0e-143 510.8 373 73.5
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 1.2e-142 510.4 371 73.3
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 2.6e-142 509.2 373 74.0
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 1.3e-141 506.9 368 74.2
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 1.3e-141 506.9 371 71.7
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 3.8e-141 505.4 371 72.2
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 5.0e-141 505.0 371 72.0
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 1.4e-140 503.4 371 72.2
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 4.2e-140 501.9 368 72.6
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 5.5e-140 501.5 348 76.1
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 5.5e-140 501.5 371 73.9
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 9.4e-140 500.7 363 73.0
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 1.2e-139 500.4 371 72.8
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 1.6e-139 500.0 333 78.1
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 2.1e-139 499.6 378 72.0
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 7.9e-139 497.7 378 70.1
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 3.0e-138 495.7 354 74.9
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 3.9e-138 495.4 335 77.9
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 6.7e-138 494.6 368 72.8
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 1.1e-137 493.8 399 69.2
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 2.0e-137 493.0 357 72.3
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 2.0e-137 493.0 333 76.0
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 2.5e-137 492.7 338 76.3
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 3.3e-137 492.3 336 77.4
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 4.3e-137 491.9 354 72.9
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 4.3e-137 491.9 377 71.6
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 2.2e-136 489.6 367 72.2
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 4.8e-136 488.4 376 70.5
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 1.1e-135 487.3 369 72.1
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.8e-135 486.5 367 71.7
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 2.4e-135 486.1 360 73.6
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 3.1e-135 485.7 329 76.9
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 9.1e-135 484.2 411 66.4
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 2.6e-134 482.6 329 76.6
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 7.7e-134 481.1 372 70.4
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 2.9e-133 479.2 332 74.4
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 3.8e-133 478.8 327 77.1
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 6.5e-133 478.0 378 68.5
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 2.5e-132 476.1 355 71.0
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 1.4e-130 470.3 330 73.6
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 1.1e-129 467.2 349 71.1
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 2.0e-129 466.5 279 86.0
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 9.7e-129 464.2 363 70.2
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 2.2e-128 463.0 351 69.5
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 6.3e-128 461.5 370 66.8
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 7.0e-127 458.0 326 76.1
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 7.0e-127 458.0 326 75.8
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 9.1e-127 457.6 369 67.5
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 2.6e-126 456.1 367 68.9
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 5.9e-126 454.9 373 66.5
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 8.5e-125 451.1 324 74.7
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 1.0e-122 444.1 348 69.8
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 4.0e-122 442.2 287 80.5
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 1.6e-118 430.3 382 63.6
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 7.5e-113 411.4 314 68.5
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 2.2e-112 409.8 291 73.2
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 6.3e-112 408.3 339 66.7
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 5.9e-110 401.7 279 72.4
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 4.2e-108 395.6 327 63.6
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 1.4e-106 390.6 233 85.0
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 7.5e-105 384.8 282 68.8
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 1.2e-94 350.9 298 65.8
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 2.7e-94 349.7 327 59.6
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 6.6e-93 345.1 207 83.6
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 1.5e-84 317.4 266 62.0
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 2.1e-83 313.5 261 59.0
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 6.8e-82 308.5 254 59.8
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 4.4e-81 305.8 277 60.6
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 3.7e-80 302.8 238 69.7
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 2.4e-71 273.5 237 66.2
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 2.1e-67 260.4 208 68.8
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 6.9e-66 255.4 237 59.9
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 8.7e-61 238.4 158 79.1
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 1.6e-51 207.6 187 62.6
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 2.8e-51 206.8 182 63.7
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 1.4e-50 204.5 189 63.0
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 1.8e-50 204.1 182 63.7
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 3.1e-50 203.4 264 48.1
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 5.3e-50 202.6 117 87.2
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 3.2e-47 193.4 117 81.2
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 1.2e-46 191.4 137 75.9
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 2.6e-33 147.1 109 67.9
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 2.9e-32 143.7 242 36.8
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 5.0e-32 142.9 245 36.7
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 6.3e-27 125.9 158 48.1
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 5.9e-25 119.4 189 43.9
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 2.7e-22 110.5 167 40.1
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 7.9e-22 109.0 75 74.7
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 7.4e-20 102.4 242 30.2
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 8.2e-19 99.0 50 96.0
MBI14_g30707_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 4.5e-17 93.2 74 64.9
RcHm_v2.0_Chr4g0408811 Rosa chinensis HOM05D005463 ORTHO05D006900 1.1e-15 88.6 107 49.5
CAN.G244.9 Capsicum annuum HOM05D005463 ORTHO05D006900 5.7e-12 76.3 84 50.0
AL1G61790 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 4.7e-06 56.6 44 68.2


User provided reference genes

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