Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1424.1 744 100.0
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 0.0e+00 1401.7 744 98.3
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1390.2 746 97.7
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 0.0e+00 1383.2 744 97.3
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 0.0e+00 1349.3 742 95.6
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 0.0e+00 1331.6 742 94.7
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 0.0e+00 1325.8 742 94.5
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 0.0e+00 1317.0 743 93.7
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1316.6 742 93.9
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 0.0e+00 1312.4 742 93.7
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1309.3 742 93.4
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1308.9 742 93.4
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 0.0e+00 1303.9 743 92.9
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 0.0e+00 1302.3 743 92.9
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 0.0e+00 1301.2 744 92.6
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 0.0e+00 1298.1 743 92.3
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 0.0e+00 1297.3 742 93.1
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 0.0e+00 1274.2 748 90.5
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 0.0e+00 1164.8 749 83.4
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 1.5e-309 1065.8 747 76.0
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 4.0e-299 1031.2 749 73.8
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 4.4e-298 1027.7 748 74.2
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 6.0e-295 1017.3 747 73.5
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 7.8e-295 1016.9 747 72.7
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 6.6e-294 1013.8 734 74.1
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 8.1e-292 1006.9 747 73.0
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 2.9e-289 998.4 746 71.4
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 9.2e-288 993.4 747 71.5
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 2.1e-287 992.3 747 70.3
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 3.5e-287 991.5 747 71.6
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.3e-286 989.6 750 72.9
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 1.7e-286 989.2 747 71.1
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 8.6e-286 986.9 747 70.5
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.5e-285 985.3 747 71.6
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.3e-285 984.9 764 70.3
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 3.3e-285 984.9 764 70.3
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 4.3e-285 984.6 747 72.0
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 1.2e-284 983.0 752 70.6
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.2e-284 983.0 748 71.0
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 2.8e-284 981.9 750 72.7
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 3.6e-284 981.5 747 70.7
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 5.2e-283 977.6 746 70.8
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 6.8e-283 977.2 746 70.5
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 6.8e-283 977.2 747 71.1
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 9.9e-282 973.4 764 69.5
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 2.9e-281 971.8 749 70.5
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 2.9e-281 971.8 746 71.4
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 6.4e-281 970.7 752 70.1
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 1.4e-280 969.5 719 72.5
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 1.9e-280 969.1 758 70.1
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 7.1e-280 967.2 740 70.5
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 7.1e-280 967.2 750 70.8
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 1.6e-279 966.1 749 70.4
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.6e-279 964.5 747 70.5
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 6.0e-279 964.1 752 70.2
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 6.0e-279 964.1 747 69.3
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.0e-278 963.4 747 70.7
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 3.0e-278 961.8 747 69.9
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.3e-277 958.4 747 69.3
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 4.3e-277 958.0 748 68.6
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.6e-276 956.1 747 69.3
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.8e-276 955.3 747 69.3
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 1.1e-275 953.4 752 69.9
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 4.0e-275 951.4 746 69.3
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 9.0e-275 950.3 747 70.3
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 4.9e-273 944.5 752 69.9
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 1.4e-272 943.0 751 69.6
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 4.2e-272 941.4 748 67.4
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 7.1e-272 940.6 748 69.0
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 2.7e-271 938.7 747 68.3
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 2.7e-271 938.7 747 69.6
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 6.6e-270 934.1 749 68.0
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 9.6e-269 930.2 747 68.1
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 3.6e-268 928.3 746 67.0
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 4.8e-268 927.9 745 68.7
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.8e-267 926.0 765 68.1
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 9.0e-267 923.7 747 68.9
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 3.8e-265 918.3 742 68.7
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 4.9e-265 917.9 748 68.3
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.9e-264 916.0 745 67.2
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 3.2e-264 915.2 747 66.9
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 3.2e-264 915.2 748 66.3
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 4.2e-264 914.8 750 66.8
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 9.3e-264 913.7 738 68.0
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 1.2e-263 913.3 747 66.4
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 6.0e-263 911.0 765 67.2
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 6.0e-263 911.0 757 66.1
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 1.8e-262 909.4 747 67.3
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 5.1e-262 907.9 747 68.3
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 2.5e-261 905.6 747 66.8
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.3e-260 903.3 792 65.3
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 2.8e-260 902.1 745 66.3
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 1.8e-259 899.4 745 66.7
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 2.4e-259 899.0 747 67.2
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 4.0e-259 898.3 749 67.6
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 2.6e-258 895.6 731 66.1
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 4.5e-258 894.8 750 65.3
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 1.3e-257 893.3 747 65.5
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.1e-256 890.2 703 67.9
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.4e-256 889.8 746 65.4
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 1.9e-256 889.4 735 68.3
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 9.3e-256 887.1 733 65.5
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 4.6e-255 884.8 752 62.8
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 1.3e-254 883.2 735 65.6
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 2.3e-254 882.5 734 66.5
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 3.0e-254 882.1 747 65.9
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 3.3e-253 878.6 791 62.6
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 1.3e-252 876.7 757 64.5
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 1.6e-252 876.3 752 64.8
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.1e-251 873.6 730 65.9
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.4e-251 873.2 742 65.5
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.8e-251 872.8 738 64.8
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 5.3e-251 871.3 764 64.4
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 1.5e-250 869.8 732 67.2
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 1.5e-250 869.8 747 65.1
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 2.6e-250 869.0 733 66.2
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 2.6e-250 869.0 733 66.2
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.3e-249 866.7 730 66.6
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 4.2e-248 861.7 754 63.3
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 3.5e-247 858.6 723 64.7
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 2.2e-244 849.4 790 61.0
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 4.5e-242 841.6 733 63.6
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 2.9e-241 839.0 733 62.6
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 7.2e-240 834.3 745 63.2
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 3.0e-238 828.9 718 65.3
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 9.7e-237 823.9 753 61.5
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 1.4e-232 810.1 783 60.3
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 6.1e-231 804.7 806 60.0
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.8e-227 793.1 555 75.1
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 6.1e-223 778.1 757 60.4
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 1.5e-221 773.5 754 59.7
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 2.2e-209 733.0 725 58.1
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 2.5e-208 729.6 760 56.3
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 5.5e-208 728.4 734 58.2
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 4.7e-207 725.3 749 56.7
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 8.3e-196 688.0 440 79.8
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 1.9e-187 660.2 768 52.3
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 1.4e-182 644.0 731 52.3
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 1.6e-170 604.0 631 56.1
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 9.3e-163 578.2 372 79.8
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 1.1e-160 571.2 575 58.3
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 2.2e-140 503.8 734 44.0
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 2.9e-132 476.9 623 47.0
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 5.0e-132 476.1 440 60.9
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 5.7e-128 462.6 303 77.9
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.9e-124 450.3 766 41.1
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.9e-124 450.3 766 41.1
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 8.8e-121 438.7 614 44.8
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 5.0e-116 422.9 514 47.3
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 5.5e-115 419.5 448 55.4
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 8.5e-100 369.0 391 52.9
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 4.0e-89 333.6 287 65.5
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 1.5e-88 331.6 258 69.4
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 2.0e-88 331.3 483 42.2
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 1.4e-86 325.1 282 62.4
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 8.9e-81 305.8 184 84.8
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 1.8e-73 281.6 354 48.3
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 5.2e-65 253.4 620 36.6
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 2.2e-63 248.1 418 39.2
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 1.4e-54 218.8 462 35.3
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 2.8e-50 204.5 644 34.2
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 4.4e-48 197.2 629 28.5
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 2.8e-42 177.9 193 54.9
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 2.6e-40 171.4 110 76.4
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 3.0e-36 157.9 131 64.9
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 4.9e-31 140.6 164 52.4
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 6.4e-31 140.2 72 95.8
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 6.4e-31 140.2 72 95.8
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 1.1e-30 139.4 90 73.3
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 1.1e-30 139.4 90 73.3
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 4.6e-29 134.0 76 89.5
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 1.0e-28 132.9 72 94.4
SHI03859 Sapria himalayana HOM05D000105 ORTHO05D000023 4.0e-25 120.9 303 35.6
Hma1.2p1_0026F.1_g016370 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 6.0e-21 107.1 227 35.2
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 1.5e-19 102.4 51 94.1
vmacro18312 Vaccinium macrocarpon HOM05D004367 ORTHO05D004937 1.1e-17 96.3 158 38.6
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 4.1e-17 94.4 50 90.0
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 4.1e-17 94.4 60 71.7
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 2.0e-16 92.0 270 34.1
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.9e-14 85.5 84 58.3
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 4.2e-14 84.3 60 65.0
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 1.6e-13 82.4 85 54.1
ECA247G3396 Erigeron canadensis HOM05D003681 ORTHO05D004703 1.8e-12 79.0 67 62.7
VMungo1127G0394 Vigna mungo HOM05D003681 ORTHO05D004703 3.1e-09 68.2 89 47.2
VMungo0133G0001 Vigna mungo HOM05D003681 ORTHO05D433683 2.5e-06 58.5 89 47.2


User provided reference genes

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