Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 3.4e-100 368.6 230 100.0
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 1.7e-94 349.7 231 84.4
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 1.5e-92 343.2 230 87.8
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 1.0e-91 340.5 230 83.0
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.8e-86 321.6 230 85.2
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 6.3e-86 321.2 231 79.7
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 4.2e-82 308.5 234 82.5
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 2.8e-70 269.2 230 76.1
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 3.5e-68 262.3 230 78.3
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 8.0e-65 251.1 129 91.5
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 8.9e-56 221.1 225 55.6
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 9.2e-53 211.1 234 55.6
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 8.9e-48 194.5 231 65.8
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 8.9e-48 194.5 233 51.9
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 3.4e-47 192.6 237 51.1
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 2.2e-46 189.9 227 49.8
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.8e-40 170.2 231 43.3
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 1.8e-40 170.2 230 43.9
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 2.3e-40 169.9 138 61.6
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 5.2e-40 168.7 230 44.3
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 6.8e-40 168.3 233 43.8
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.2e-39 167.5 233 45.1
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 3.4e-39 166.0 149 59.1
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 5.8e-39 165.2 230 47.4
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 5.8e-39 165.2 245 41.6
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 5.8e-39 165.2 245 41.6
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 9.9e-39 164.5 128 61.7
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 9.9e-39 164.5 233 42.9
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 2.2e-38 163.3 138 58.7
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 2.9e-38 162.9 138 57.2
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 2.9e-38 162.9 135 57.8
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 4.9e-38 162.2 229 49.3
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 6.4e-38 161.8 128 60.9
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 1.1e-37 161.0 128 59.4
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 1.4e-37 160.6 138 58.0
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.9e-37 160.2 225 41.8
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 4.1e-37 159.1 138 57.2
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 4.1e-37 159.1 230 47.8
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 9.2e-37 157.9 229 41.5
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 1.2e-36 157.5 137 55.5
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.6e-36 157.1 128 60.9
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.6e-36 157.1 234 40.6
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 7.8e-36 154.8 128 60.2
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.0e-35 154.5 233 40.8
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.3e-35 154.1 138 56.5
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 3.9e-35 152.5 133 54.1
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 8.6e-35 151.4 140 54.3
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.5e-34 150.6 229 41.5
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 1.9e-34 150.2 133 53.4
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 5.6e-34 148.7 137 54.0
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.2e-33 147.5 233 39.9
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.1e-33 146.7 140 54.3
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 3.6e-33 146.0 149 53.0
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 4.7e-33 145.6 232 43.5
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 4.7e-33 145.6 134 54.5
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 1.4e-32 144.1 135 49.6
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 4.0e-32 142.5 235 39.6
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 1.2e-31 141.0 138 50.0
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 1.2e-31 141.0 231 39.8
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 2.6e-31 139.8 138 52.2
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 2.6e-31 139.8 133 52.6
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 2.6e-31 139.8 135 54.1
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 3.4e-31 139.4 122 54.1
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 3.4e-31 139.4 122 54.1
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 5.8e-31 138.7 146 50.7
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.3e-30 137.5 125 56.0
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 1.7e-30 137.1 135 52.6
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 8.4e-30 134.8 88 70.5
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 1.1e-29 134.4 129 55.0
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 1.4e-29 134.0 87 72.4
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 1.9e-29 133.7 130 53.8
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 2.4e-29 133.3 135 55.6
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 4.2e-29 132.5 137 52.6
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 5.4e-29 132.1 88 69.3
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.1e-28 130.2 132 54.5
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 2.1e-28 130.2 135 50.4
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 3.5e-28 129.4 123 51.2
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 4.6e-28 129.0 135 49.6
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 4.6e-28 129.0 233 39.9
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.6e-28 129.0 117 56.4
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 7.8e-28 128.3 118 54.2
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 1.0e-27 127.9 86 68.6
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 1.0e-27 127.9 86 68.6
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.0e-27 127.9 140 48.6
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.3e-27 127.5 140 48.6
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 1.7e-27 127.1 101 56.4
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.3e-27 126.7 132 53.8
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.3e-27 126.7 133 54.1
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 3.0e-27 126.3 265 34.7
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 3.0e-27 126.3 265 34.7
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.0e-27 126.3 228 40.4
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 3.9e-27 125.9 99 58.6
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.1e-27 125.6 133 54.1
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 1.1e-26 124.4 135 51.1
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 1.9e-26 123.6 131 51.9
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 2.5e-26 123.2 135 50.4
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.5e-26 123.2 135 52.6
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.3e-26 122.9 135 51.9
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 3.3e-26 122.9 86 65.1
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 4.3e-26 122.5 158 46.8
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.6e-26 121.3 135 51.9
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 1.6e-25 120.6 141 45.4
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 1.6e-25 120.6 136 51.5
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 2.1e-25 120.2 136 50.7
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 4.8e-25 119.0 137 44.5
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 4.8e-25 119.0 113 52.2
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 8.1e-25 118.2 122 51.6
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.1e-24 117.9 135 50.4
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 1.4e-24 117.5 239 33.5
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 6.9e-24 115.2 128 55.5
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 1.2e-23 114.4 131 48.1
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 2.0e-23 113.6 137 45.3
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 7.6e-23 111.7 134 48.5
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 7.6e-23 111.7 129 46.5
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 1.3e-22 110.9 92 56.5
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 2.2e-22 110.2 120 50.0
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 2.9e-22 109.8 131 46.6
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 2.9e-22 109.8 234 33.8
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 3.8e-22 109.4 156 45.5
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 6.4e-22 108.6 231 34.2
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 6.4e-22 108.6 127 47.2
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 2.4e-21 106.7 134 44.8
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 5.4e-21 105.5 139 47.5
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 7.1e-21 105.1 84 59.5
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 7.1e-21 105.1 84 59.5
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 9.3e-21 104.8 84 58.3
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 9.3e-21 104.8 84 58.3
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 9.3e-21 104.8 84 58.3
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 7.8e-20 101.7 131 40.5
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 7.8e-20 101.7 131 42.0
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 1.7e-19 100.5 136 45.6
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 1.7e-19 100.5 136 46.3
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 5.1e-19 99.0 137 45.3
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 6.6e-19 98.6 139 43.2
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 6.6e-19 98.6 139 43.2
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 1.9e-18 97.1 139 44.6
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 1.9e-18 97.1 135 44.4
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 1.9e-18 97.1 136 44.9
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 1.9e-18 97.1 136 44.9
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 3.3e-18 96.3 87 55.2
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 4.3e-18 95.9 135 42.2
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 4.3e-18 95.9 135 42.2
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 7.3e-18 95.1 139 41.7
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 7.3e-18 95.1 139 41.7
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 7.3e-18 95.1 131 42.7
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 4.8e-17 92.4 137 43.1
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 4.8e-17 92.4 137 43.1
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 8.1e-17 91.7 135 43.0
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.5e-15 85.9 89 49.4
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 3.8e-14 82.8 227 30.0
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 1.9e-13 80.5 122 42.6
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 3.2e-13 79.7 137 39.4
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 1.2e-12 77.8 231 33.8
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 1.2e-12 77.8 71 52.1
CARHR148680 Cardamine hirsuta HOM05D013829 ORTHO05D015952 1.6e-12 77.4 124 43.5
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.6e-12 77.4 108 35.2
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.7e-12 76.6 96 45.8
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 2.7e-12 76.6 131 39.7
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 7.9e-12 75.1 84 45.2
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 2.3e-11 73.6 230 33.9
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 3.0e-11 73.2 60 58.3
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 6.7e-11 72.0 145 35.9
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 8.7e-11 71.6 228 30.3
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.1e-10 71.2 131 37.4
A06p41240 Brassica napus HOM05D013829 ORTHO05D015952 1.1e-10 71.2 232 32.8
BraA06t27048Z Brassica rapa HOM05D013829 ORTHO05D015952 1.1e-10 71.2 232 32.8
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 2.5e-10 70.1 231 34.2
CANSAT64G1789 Cannabis sativa HOM05D004407 ORTHO05D005074 1.6e-09 67.4 129 39.5
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 2.8e-09 66.6 229 29.7
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.8e-08 63.9 86 41.9
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 1.8e-08 63.9 115 40.9
BolC7t44160H Brassica oleracea HOM05D013829 ORTHO05D015952 1.8e-08 63.9 233 30.9
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 3.1e-08 63.2 53 62.3
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 6.9e-08 62.0 86 41.9
AT3G27355 Arabidopsis thaliana HOM05D013829 ORTHO05D015952 6.9e-08 62.0 116 38.8
BcaB06g27546 Brassica carinata HOM05D002760 ORTHO05D003169 1.2e-07 61.2 28 96.4
Nitab4.5_0000040g0600 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.3e-06 57.8 132 31.1
PSO782G3492 Papaver somniferum HOM05D004407 ORTHO05D005074 3.8e-06 56.2 251 37.1


User provided reference genes

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