Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p47150 Brassica napus HOM05D004148 ORTHO05D027074 5.5e-72 274.2 143 100.0
BolC4t26312H Brassica oleracea HOM05D004148 ORTHO05D027074 1.6e-71 272.7 143 99.3
C06p13770 Brassica napus HOM05D000046 ORTHO05D032580 1.1e-51 206.8 168 71.4
BolC6t36550H Brassica oleracea HOM05D000186 ORTHO05D032580 1.1e-51 206.8 168 71.4
BraA09t38674Z Brassica rapa HOM05D004148 ORTHO05D027074 4.1e-43 178.3 117 83.8
BcaC08g43976 Brassica carinata HOM05D000046 ORTHO05D032580 9.2e-35 150.6 158 58.9
BcaC06g36511 Brassica carinata HOM05D004148 ORTHO05D027074 9.5e-16 87.4 53 84.9
BraA07t28462Z Brassica rapa HOM05D004148 ORTHO05D004709 3.6e-15 85.5 86 57.0
C05p34090 Brassica napus HOM05D004148 ORTHO05D004709 4.7e-15 85.1 51 88.2
BolC8t48007H Brassica oleracea HOM05D004148 ORTHO05D004709 4.7e-15 85.1 53 84.9
BcaB07g34126 Brassica carinata HOM05D000274 ORTHO05D001466 8.9e-14 80.9 102 52.0
BraA05t21194Z Brassica rapa HOM05D004148 ORTHO05D004709 1.2e-13 80.5 73 63.0
AT1G09130 Arabidopsis thaliana HOM05D000274 ORTHO05D001466 1.5e-13 80.1 71 64.8
Thhalv10008180m.g Eutrema salsugineum HOM05D000274 ORTHO05D001466 1.5e-13 80.1 71 64.8
SpUn0237_0010 Schrenkiella parvula HOM05D000274 ORTHO05D001466 1.5e-13 80.1 71 64.8
SpUn0301_0010 Schrenkiella parvula HOM05D000274 ORTHO05D001466 1.5e-13 80.1 71 64.8
CARHR009000 Cardamine hirsuta HOM05D000274 ORTHO05D001466 2.6e-13 79.3 71 64.8
AL1G19570 Arabidopsis lyrata HOM05D000274 ORTHO05D001466 3.4e-13 79.0 71 63.4
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 3.4e-13 79.0 50 80.0
Carub.0001s0842 Capsella rubella HOM05D000274 ORTHO05D001466 3.4e-13 79.0 71 63.4
BcaC06g36510 Brassica carinata HOM05D000274 ORTHO05D001466 1.3e-12 77.0 96 50.0
A08p06640 Brassica napus HOM05D004148 ORTHO05D004709 1.3e-12 77.0 86 53.5
Phvul.006G089800 Phaseolus vulgaris HOM05D000274 ORTHO05D001466 1.3e-12 77.0 71 63.4
Aa31sc55G130 Aethionema arabicum HOM05D000274 ORTHO05D001466 1.7e-12 76.6 71 60.6
A08p34810 Brassica napus HOM05D000274 ORTHO05D001466 3.7e-12 75.5 71 63.4
BraA08t35392Z Brassica rapa HOM05D000274 ORTHO05D001466 3.7e-12 75.5 71 63.4
BcaC07g38478 Brassica carinata HOM05D000274 ORTHO05D001466 8.3e-12 74.3 71 62.0
C08p12450 Brassica napus HOM05D000274 ORTHO05D001466 8.3e-12 74.3 71 62.0
BolC8t48885H Brassica oleracea HOM05D000274 ORTHO05D001466 8.3e-12 74.3 71 62.0
Glyma.03G235800 Glycine max HOM05D000274 ORTHO05D001466 8.3e-12 74.3 71 59.2
Glyma.19G233600 Glycine max HOM05D000274 ORTHO05D001466 8.3e-12 74.3 71 59.2
VMungo0540G1623 Vigna mungo HOM05D000274 ORTHO05D001466 1.1e-11 73.9 71 62.0
THA.LOC104820780 Tarenaya hassleriana HOM05D000274 ORTHO05D001466 1.4e-11 73.6 71 60.6
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 2.4e-11 72.8 50 78.0
BolSC21t60233H Brassica oleracea HOM05D004148 ORTHO05D004709 2.4e-11 72.8 50 78.0
TWI56G0958 Tripterygium wilfordii HOM05D000274 ORTHO05D001466 2.4e-11 72.8 71 59.2
Lj1g0011369 Lotus japonicus HOM05D000274 ORTHO05D001466 4.1e-11 72.0 71 56.3
A05p23300 Brassica napus HOM05D004148 ORTHO05D004709 7.1e-11 71.2 40 87.5
CANSAT54G2627 Cannabis sativa HOM05D000274 ORTHO05D001466 7.1e-11 71.2 71 59.2
Nitab4.5_0004891g0010 Nicotiana tabacum HOM05D000274 ORTHO05D001466 7.1e-11 71.2 78 53.8
GSVIVG01031146001 Vitis vinifera HOM05D000274 ORTHO05D001466 7.1e-11 71.2 71 57.7
CSS0003204 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D001466 9.2e-11 70.9 71 56.3
CSS0049806 Camellia sinensis var. sinensis HOM05D000274 ORTHO05D001466 9.2e-11 70.9 71 56.3
Cfa006627 Carpinus fangiana HOM05D000274 ORTHO05D001466 1.2e-10 70.5 71 56.3
AUR62005204 Chenopodium quinoa HOM05D000274 ORTHO05D001466 1.2e-10 70.5 72 55.6
Eucgr.H04533 Eucalyptus grandis HOM05D000274 ORTHO05D001466 1.2e-10 70.5 71 57.7
Nitab4.5_0003658g0080 Nicotiana tabacum HOM05D000274 ORTHO05D001466 1.2e-10 70.5 71 56.3
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 1.2e-10 70.5 71 56.3
Potri.013G017166 Populus trichocarpa HOM05D000274 ORTHO05D001466 1.2e-10 70.5 71 56.3
Sabra13G0016000 Salix brachista HOM05D000274 ORTHO05D001466 1.2e-10 70.5 71 56.3
DCAR_022148 Daucus carota HOM05D000274 ORTHO05D001466 1.6e-10 70.1 71 56.3
Oeu025704.1 Olea europaea HOM05D000274 ORTHO05D001466 1.6e-10 70.1 71 56.3
MSTRG.20419 Avicennia marina HOM05D000274 ORTHO05D001466 2.1e-10 69.7 71 54.9
QL03p020996 Quercus lobata HOM05D000274 ORTHO05D001466 2.1e-10 69.7 71 56.3
QL03p021872 Quercus lobata HOM05D000274 ORTHO05D001466 2.1e-10 69.7 71 56.3
Thecc.05G312800 Theobroma cacao HOM05D000274 ORTHO05D001466 2.1e-10 69.7 71 54.9
Prupe.6G321000 Prunus persica HOM05D000274 ORTHO05D001466 2.7e-10 69.3 71 56.3
MELO3C004223.2 Cucumis melo HOM05D000274 ORTHO05D001466 3.5e-10 68.9 71 54.9
Gohir.D11G309400 Gossypium hirsutum HOM05D000274 ORTHO05D001466 3.5e-10 68.9 71 56.3
Gorai.007G341400 Gossypium raimondii HOM05D000274 ORTHO05D001466 3.5e-10 68.9 71 56.3
Hma1.2p1_1292F.1_g273720 Hydrangea macrophylla HOM05D000274 ORTHO05D001466 3.5e-10 68.9 71 54.9
Hma1.2p1_1292F.1_g273730 Hydrangea macrophylla HOM05D000274 ORTHO05D001466 3.5e-10 68.9 71 54.9
Sed0017660 Sechium edule HOM05D000274 ORTHO05D001466 3.5e-10 68.9 71 53.5
BcaC05g24762 Brassica carinata HOM05D000274 ORTHO05D001466 4.6e-10 68.6 71 59.2
C05p07120 Brassica napus HOM05D000274 ORTHO05D001466 4.6e-10 68.6 71 59.2
BolC5t29467H Brassica oleracea HOM05D000274 ORTHO05D001466 4.6e-10 68.6 71 59.2
AUR62000765 Chenopodium quinoa HOM05D000274 ORTHO05D001466 4.6e-10 68.6 72 54.2
FAN05G4255 Fragaria x ananassa HOM05D000274 ORTHO05D001466 4.6e-10 68.6 71 56.3
Gohir.A11G294700 Gossypium hirsutum HOM05D000274 ORTHO05D001466 4.6e-10 68.6 71 56.3
Dinv40339 Davidia involucrata HOM05D000274 ORTHO05D001466 6.0e-10 68.2 71 53.5
Lalb_Chr18g0045741 Lupinus albus HOM05D000274 ORTHO05D001466 6.0e-10 68.2 71 54.9
PGR031G3859 Punica granatum HOM05D000274 ORTHO05D001466 6.0e-10 68.2 71 54.9
Nn4g25836 Nelumbo nucifera HOM05D000274 ORTHO05D001466 7.8e-10 67.8 71 53.5
FvH4_6g06550 Fragaria vesca HOM05D000274 ORTHO05D001466 1.0e-09 67.4 71 54.9
FAN02G0716 Fragaria x ananassa HOM05D000274 ORTHO05D001466 1.0e-09 67.4 71 54.9
FAN14G2027 Fragaria x ananassa HOM05D000274 ORTHO05D001466 1.0e-09 67.4 71 54.9
Manes.08G117700 Manihot esculenta HOM05D000274 ORTHO05D001466 1.0e-09 67.4 71 53.5
CAN.G1459.9 Capsicum annuum HOM05D000274 ORTHO05D001466 1.3e-09 67.0 71 54.9
MD04G1200900 Malus domestica HOM05D000274 ORTHO05D001466 1.3e-09 67.0 71 54.9
RcHm_v2.0_Chr3g0455701 Rosa chinensis HOM05D000274 ORTHO05D001466 1.3e-09 67.0 71 53.5
Atru.chr2.28 Acer truncatum HOM05D000274 ORTHO05D001466 1.7e-09 66.6 71 53.5
Cpa.g.sc48.94 Carica papaya HOM05D000274 ORTHO05D001466 1.7e-09 66.6 71 52.1
CDE02G0083 Ceratophyllum demersum HOM05D000274 ORTHO05D001466 2.3e-09 66.2 71 53.5
CDE08G0842 Ceratophyllum demersum HOM05D000274 ORTHO05D001466 2.3e-09 66.2 71 53.5
Migut.B01019 Erythranthe guttata HOM05D000274 ORTHO05D001466 2.3e-09 66.2 71 52.1
MBI18_g13691_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D001466 3.0e-09 65.9 71 53.5
MBI18_g21820_MAGBIO Magnolia biondii HOM05D000274 ORTHO05D001466 3.0e-09 65.9 71 53.5
MD12G1213400 Malus domestica HOM05D000274 ORTHO05D001466 3.0e-09 65.9 71 53.5
Ca_05801_v3 Cicer arietinum L. HOM05D000274 ORTHO05D001466 3.9e-09 65.5 71 54.9
Cc02_g34110 Coffea canephora HOM05D000274 ORTHO05D001466 5.1e-09 65.1 71 52.1
COL.COLO4_10517 Corchorus olitorius HOM05D000274 ORTHO05D001466 5.1e-09 65.1 72 54.2
Solyc01g099690.3 Solanum lycopersicum HOM05D000274 ORTHO05D001466 5.1e-09 65.1 71 53.5
Sopen01g043210 Solanum pennellii HOM05D000274 ORTHO05D001466 5.1e-09 65.1 71 53.5
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 6.6e-09 64.7 52 71.2
HanXRQChr03g0071301 Helianthus annuus HOM05D000274 ORTHO05D001466 6.6e-09 64.7 71 53.5
TAR633G0202 Trochodendron aralioides HOM05D000274 ORTHO05D001466 6.6e-09 64.7 71 52.1
Lsat_1_v5_gn_9_124360 Lactuca sativa HOM05D000274 ORTHO05D001466 8.6e-09 64.3 71 52.1
PSO210G4713 Papaver somniferum HOM05D000274 ORTHO05D001466 8.6e-09 64.3 71 50.7
unitig_32.g11157 Utricularia gibba HOM05D000274 ORTHO05D001466 8.6e-09 64.3 85 47.1
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 1.1e-08 63.9 50 70.0
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 1.1e-08 63.9 50 70.0
ATR0796G121 Amborella trichopoda HOM05D000274 ORTHO05D001466 1.5e-08 63.5 71 52.1
EL10Ac4g09917 Beta vulgaris HOM05D000274 ORTHO05D001466 1.5e-08 63.5 70 54.3
CiPaw.08G162000 Carya illinoinensis HOM05D000274 ORTHO05D001466 1.5e-08 63.5 71 50.7
Ciclev10003175m.g Citrus clementina HOM05D000274 ORTHO05D001466 1.9e-08 63.2 71 50.7
Sc16g0008830 Simmondsia chinensis HOM05D000274 ORTHO05D001466 1.9e-08 63.2 71 50.7
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 2.5e-08 62.8 86 45.3
Medtr7g112640 Medicago truncatula HOM05D000274 ORTHO05D001466 2.5e-08 62.8 71 53.5
CsaV3_2G006650 Cucumis sativus L. HOM05D000274 ORTHO05D001466 3.3e-08 62.4 72 54.2
PSO832G3347 Papaver somniferum HOM05D000274 ORTHO05D001466 4.3e-08 62.0 71 49.3
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 4.3e-08 62.0 88 46.6
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 5.6e-08 61.6 50 68.0
ECA240G0135 Erigeron canadensis HOM05D000274 ORTHO05D001466 5.6e-08 61.6 71 50.7
ClCG00G001990 Citrullus lanatus HOM05D000274 ORTHO05D001466 9.5e-08 60.8 70 50.0
ClCG02G015430 Citrullus lanatus HOM05D000274 ORTHO05D001466 9.5e-08 60.8 70 50.0
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 1.2e-07 60.5 46 71.7
Duzib106G1487 Durio zibethinus HOM05D000274 ORTHO05D001466 1.2e-07 60.5 71 49.3
Haze_04141 Corylus avellana HOM05D000274 ORTHO05D001466 2.1e-07 59.7 99 39.4
TPR.G33238 Trifolium pratense HOM05D000274 ORTHO05D001466 2.1e-07 59.7 71 50.7
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 4.7e-07 58.5 49 65.3
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 8.1e-07 57.8 49 65.3
DCAR_003354 Daucus carota HOM05D000274 ORTHO05D001466 8.1e-07 57.8 77 46.8
BcaB05g23088 Brassica carinata HOM05D004148 ORTHO05D092095 3.1e-06 55.8 32 84.4
Psat0s27g0160 Pisum sativum HOM05D000274 ORTHO05D001466 4.0e-06 55.5 71 47.9
SGA_v2.0_scaffold36G14398 Striga asiatica HOM05D000274 ORTHO05D001466 6.8e-06 54.7 71 43.7


User provided reference genes

Program Settings