Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 5.2e-170 600.9 288 100.0
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 5.2e-170 600.9 288 100.0
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 9.1e-159 563.5 292 93.8
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 1.0e-157 560.1 292 93.5
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 3.8e-104 382.1 202 92.1
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 1.1e-98 364.0 200 87.5
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 1.5e-89 333.6 201 79.6
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 2.1e-86 323.2 202 78.7
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 5.7e-84 315.1 200 77.5
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 1.0e-80 304.3 200 74.5
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 1.9e-79 300.1 204 72.5
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 3.6e-70 269.2 200 64.5
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 6.9e-66 255.0 192 63.5
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.2e-65 254.2 175 66.9
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.0e-65 253.4 192 63.0
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 5.9e-65 251.9 187 63.6
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 7.7e-65 251.5 168 68.5
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 2.9e-64 249.6 186 63.4
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 2.9e-64 249.6 192 61.5
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 6.5e-64 248.4 197 59.4
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 8.5e-64 248.1 192 61.5
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 3.2e-63 246.1 192 60.9
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 5.5e-63 245.4 187 61.5
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 7.2e-63 245.0 176 66.5
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 9.4e-63 244.6 198 61.1
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 9.4e-63 244.6 198 61.1
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 9.4e-63 244.6 187 63.1
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 9.4e-63 244.6 190 62.6
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 1.2e-62 244.2 155 75.5
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 1.2e-62 244.2 192 60.9
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 1.6e-62 243.8 171 66.7
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 2.1e-62 243.4 178 65.2
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 2.1e-62 243.4 168 67.9
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 2.7e-62 243.0 172 68.0
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 3.6e-62 242.7 197 59.9
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 3.6e-62 242.7 201 58.2
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 4.7e-62 242.3 168 66.7
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 4.7e-62 242.3 188 63.8
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 6.1e-62 241.9 197 59.9
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 1.0e-61 241.1 166 68.1
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 1.8e-61 240.4 188 60.6
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 3.0e-61 239.6 174 64.9
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 3.0e-61 239.6 174 64.9
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 3.0e-61 239.6 192 62.5
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 6.7e-61 238.4 188 61.7
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 1.1e-60 237.7 168 65.5
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.5e-60 237.3 198 58.6
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 2.0e-60 236.9 174 64.9
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.6e-60 236.5 198 56.6
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 2.6e-60 236.5 170 65.9
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 2.6e-60 236.5 202 58.4
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 3.3e-60 236.1 191 60.7
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 3.3e-60 236.1 195 59.0
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 3.3e-60 236.1 196 59.2
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 4.4e-60 235.7 198 56.6
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 4.4e-60 235.7 194 60.3
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 4.4e-60 235.7 193 57.5
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 7.4e-60 235.0 166 66.3
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 7.4e-60 235.0 191 59.2
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 9.7e-60 234.6 200 57.0
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 1.3e-59 234.2 192 59.4
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.7e-59 233.8 198 57.1
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 2.8e-59 233.0 194 58.8
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 3.7e-59 232.6 192 60.4
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 6.3e-59 231.9 191 60.2
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 1.1e-58 231.1 200 59.5
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 1.1e-58 231.1 189 59.3
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.4e-58 230.7 201 56.7
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 1.4e-58 230.7 192 60.4
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.4e-58 230.7 192 60.4
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.4e-58 230.7 192 60.4
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 1.8e-58 230.3 190 60.0
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 1.8e-58 230.3 203 54.2
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 2.4e-58 229.9 168 65.5
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 2.4e-58 229.9 203 57.1
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 2.4e-58 229.9 169 63.3
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 2.4e-58 229.9 199 57.8
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 2.4e-58 229.9 198 56.6
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 3.1e-58 229.6 202 56.9
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 3.1e-58 229.6 196 55.6
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 4.1e-58 229.2 165 65.5
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 4.1e-58 229.2 196 57.7
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 7.0e-58 228.4 192 55.7
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 7.0e-58 228.4 192 56.8
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 9.1e-58 228.0 165 64.2
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 9.1e-58 228.0 167 62.3
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 9.1e-58 228.0 192 56.8
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.2e-57 227.6 168 64.9
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 2.0e-57 226.9 192 57.8
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 2.6e-57 226.5 197 53.8
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 3.5e-57 226.1 170 61.2
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 5.9e-57 225.3 167 63.5
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 5.9e-57 225.3 177 58.2
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 7.7e-57 224.9 201 56.7
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 7.7e-57 224.9 195 56.9
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 7.7e-57 224.9 192 57.8
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 7.7e-57 224.9 193 58.5
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 1.3e-56 224.2 203 55.7
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 1.3e-56 224.2 170 62.4
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 2.2e-56 223.4 190 59.5
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 5.0e-56 222.2 174 59.2
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 8.5e-56 221.5 198 54.5
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 1.1e-55 221.1 197 54.3
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 1.5e-55 220.7 188 57.4
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 3.2e-55 219.5 197 53.3
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 3.2e-55 219.5 194 55.2
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 1.2e-54 217.6 186 57.5
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 4.7e-54 215.7 197 55.3
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 4.7e-54 215.7 171 59.6
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 1.0e-53 214.5 190 55.3
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 1.0e-53 214.5 190 55.3
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 3.0e-53 213.0 193 57.0
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 6.7e-53 211.8 188 56.9
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 7.5e-52 208.4 182 56.0
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 4.8e-51 205.7 145 65.5
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 3.1e-50 203.0 193 50.3
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 9.4e-47 191.4 152 61.2
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 1.6e-46 190.7 286 40.9
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 2.1e-46 190.3 173 52.6
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 7.5e-44 181.8 164 51.8
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 9.8e-44 181.4 161 59.0
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 6.3e-43 178.7 128 63.3
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 5.9e-41 172.2 167 49.1
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 1.5e-39 167.5 157 54.1
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 3.6e-38 162.9 133 61.7
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 2.0e-36 157.1 168 44.6
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 1.6e-33 147.5 169 44.4
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.0e-32 144.8 155 47.7
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.3e-32 144.4 192 44.3
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 2.1e-30 137.1 168 48.2
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.6e-30 136.3 158 44.9
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 9.2e-26 121.7 191 33.5
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 8.6e-24 115.2 166 41.0
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 3.3e-23 113.2 78 65.4
AL1G21602 Arabidopsis lyrata HOM05D011357 ORTHO05D010512 2.2e-19 100.5 90 54.4
AT1G10717 Arabidopsis thaliana HOM05D011357 ORTHO05D010512 1.1e-18 98.2 88 53.4
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 3.9e-16 89.7 168 32.7
AT2G16225 Arabidopsis thaliana HOM05D011357 ORTHO05D010512 2.8e-14 83.6 86 50.0
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.8e-13 80.9 63 52.4
Carub.0001s1023 Capsella rubella HOM05D011357 ORTHO05D010512 6.8e-13 79.0 82 47.6
AT1G10715 Arabidopsis thaliana HOM05D011357 ORTHO05D010512 1.2e-12 78.2 87 47.1
AT1G27135 Arabidopsis thaliana HOM05D011357 ORTHO05D010512 1.2e-12 78.2 83 49.4
Thhalv10015974m.g Eutrema salsugineum HOM05D011357 ORTHO05D010512 2.6e-12 77.0 85 47.1
Carub.0003s2944 Capsella rubella HOM05D011357 ORTHO05D010512 7.5e-12 75.5 93 45.2
AL1G38340 Arabidopsis lyrata HOM05D011357 ORTHO05D010512 9.8e-12 75.1 87 44.8
AL3G47520 Arabidopsis lyrata HOM05D011357 ORTHO05D010512 1.9e-10 70.9 89 41.6
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 1.6e-09 67.8 67 55.2
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 4.6e-09 66.2 62 50.0
C04p18090 Brassica napus HOM05D011357 ORTHO05D010512 6.0e-09 65.9 86 37.2
BolC4t23361H Brassica oleracea HOM05D011357 ORTHO05D010512 6.0e-09 65.9 86 37.2
A05p13790 Brassica napus HOM05D011357 ORTHO05D010512 7.8e-09 65.5 86 37.2
BraA05t20316Z Brassica rapa HOM05D011357 ORTHO05D010512 7.8e-09 65.5 86 37.2
CARHR010900 Cardamine hirsuta HOM05D011357 ORTHO05D010512 1.3e-08 64.7 64 53.1
Carub.0003s2960 Capsella rubella HOM05D025478 ORTHO05D010512 3.0e-08 63.5 84 40.5
CARHR010890 Cardamine hirsuta HOM05D006585 ORTHO05D007798 5.1e-08 62.8 54 53.7
Carub.0001s1021 Capsella rubella HOM05D020486 ORTHO05D024755 1.5e-07 61.2 81 42.0
CARHR010940 Cardamine hirsuta HOM05D009875 ORTHO05D010512 1.9e-07 60.8 87 39.1
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 4.3e-07 59.7 59 52.5
AT1G10747 Arabidopsis thaliana HOM05D009875 ORTHO05D010512 7.3e-07 58.9 87 37.9
Thhalv10009981m.g Eutrema salsugineum HOM05D020486 ORTHO05D024755 7.3e-07 58.9 95 40.0
Thhalv10009817m.g Eutrema salsugineum HOM05D013447 ORTHO05D010512 1.6e-06 57.8 79 34.2
Carub.0001s1029 Capsella rubella HOM05D009875 ORTHO05D010512 2.8e-06 57.0 74 39.2
Carub.0004s2371 Capsella rubella HOM05D009875 ORTHO05D010512 2.8e-06 57.0 81 37.0
Carub.0006s2682 Capsella rubella HOM05D009875 ORTHO05D010512 3.6e-06 56.6 85 36.5
CARHR106100 Cardamine hirsuta HOM05D025478 ORTHO05D010512 3.6e-06 56.6 89 42.7
CARHR048590 Cardamine hirsuta HOM05D020486 ORTHO05D024755 8.1e-06 55.5 75 41.3


User provided reference genes

Program Settings