Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p45900 Brassica napus HOM05D003519 ORTHO05D004443 4.0e-37 157.5 76 100.0
BcaB06g27309 Brassica carinata HOM05D003519 ORTHO05D004443 1.3e-27 125.9 72 84.7
C04p45850 Brassica napus HOM05D003519 ORTHO05D004443 1.3e-27 125.9 72 84.7
BolC4t26171H Brassica oleracea HOM05D003519 ORTHO05D004443 1.3e-27 125.9 72 84.7
BraA04t16884Z Brassica rapa HOM05D003519 ORTHO05D004443 1.7e-27 125.6 72 84.7
A04p12220 Brassica napus HOM05D003519 ORTHO05D004443 5.4e-26 120.6 72 84.7
A04p12200 Brassica napus HOM05D003519 ORTHO05D004443 2.0e-25 118.6 72 80.6
BcaB06g27312 Brassica carinata HOM05D003519 ORTHO05D004443 4.6e-25 117.5 71 81.7
C04p45890 Brassica napus HOM05D003519 ORTHO05D004443 4.6e-25 117.5 71 81.7
A04p12230 Brassica napus HOM05D003519 ORTHO05D004443 1.7e-24 115.5 71 80.3
BcaB06g27331 Brassica carinata HOM05D003519 ORTHO05D004443 2.3e-24 115.2 72 79.2
C04p45870 Brassica napus HOM05D003519 ORTHO05D004443 6.6e-24 113.6 72 81.9
BcaB06g27311 Brassica carinata HOM05D003519 ORTHO05D004443 1.9e-23 112.1 72 80.6
Sp7g02520 Schrenkiella parvula HOM05D003519 ORTHO05D004443 3.4e-20 101.3 73 69.9
BolC4t26170H Brassica oleracea HOM05D003519 ORTHO05D004443 5.6e-15 84.0 72 61.1
CARHR262850 Cardamine hirsuta HOM05D003519 ORTHO05D004443 9.5e-15 83.2 72 59.7
AT5G39450 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 1.2e-14 82.8 72 59.7
CARHR262890 Cardamine hirsuta HOM05D003519 ORTHO05D004443 1.2e-14 82.8 66 62.1
AL7G50820 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 2.1e-14 82.0 72 61.1
Carub.0007s3648 Capsella rubella HOM05D003519 ORTHO05D004443 2.8e-14 81.6 72 58.3
AL7G50860 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 3.6e-14 81.3 72 58.3
CARHR258220 Cardamine hirsuta HOM05D003519 ORTHO05D004443 4.7e-14 80.9 72 58.3
Sp7g02490 Schrenkiella parvula HOM05D003519 ORTHO05D004443 4.7e-14 80.9 73 57.5
Sp7g02470 Schrenkiella parvula HOM05D003519 ORTHO05D004443 8.1e-14 80.1 73 58.9
CARHR262880 Cardamine hirsuta HOM05D003519 ORTHO05D004443 1.1e-13 79.7 64 62.5
Sp7g02530 Schrenkiella parvula HOM05D003519 ORTHO05D004443 1.8e-13 79.0 73 58.9
AT5G39480 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 3.1e-13 78.2 69 60.9
AL7G50850 Arabidopsis lyrata HOM05D003519 ORTHO05D004443 4.0e-13 77.8 68 60.3
CARHR262900 Cardamine hirsuta HOM05D003519 ORTHO05D004443 5.2e-13 77.4 74 60.8
AT5G39460 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 4.9e-11 70.9 63 61.9
AT5G39490 Arabidopsis thaliana HOM05D003519 ORTHO05D004443 1.1e-10 69.7 69 59.4
Thhalv10027700m.g Eutrema salsugineum HOM05D003519 ORTHO05D004443 1.9e-10 68.9 73 54.8
Hma1.2p1_0310F.1_g121010 Hydrangea macrophylla HOM05D003519 ORTHO05D004443 2.4e-10 68.6 68 55.9
Aa31LG9G16540 Aethionema arabicum HOM05D003519 ORTHO05D004443 4.1e-10 67.8 70 57.1
Lsat_1_v5_gn_2_36940 Lactuca sativa HOM05D003519 ORTHO05D004443 1.2e-09 66.2 67 52.2
Duzib187G0434 Durio zibethinus HOM05D003519 ORTHO05D004443 2.7e-09 65.1 68 54.4
THA.LOC104819485 Tarenaya hassleriana HOM05D003519 ORTHO05D004443 2.7e-09 65.1 68 55.9
Atru.chr4.987 Acer truncatum HOM05D003519 ORTHO05D004443 3.5e-09 64.7 67 52.2
COL.COLO4_35769 Corchorus olitorius HOM05D003519 ORTHO05D004443 6.0e-09 63.9 68 54.4
Gohir.A05G382700 Gossypium hirsutum HOM05D003519 ORTHO05D004443 6.0e-09 63.9 68 52.9
Gohir.D04G033200 Gossypium hirsutum HOM05D003519 ORTHO05D004443 6.0e-09 63.9 68 52.9
Gorai.012G036900 Gossypium raimondii HOM05D003519 ORTHO05D004443 6.0e-09 63.9 68 52.9
Lj2A614T30 Lonicera japonica HOM05D003519 ORTHO05D004443 6.0e-09 63.9 68 54.4
TAR229G0003 Trochodendron aralioides HOM05D003519 ORTHO05D004443 6.0e-09 63.9 77 49.4
TAR381G0828 Trochodendron aralioides HOM05D003519 ORTHO05D004443 6.0e-09 63.9 77 49.4
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 7.8e-09 63.5 68 52.9
Migut.L00390 Erythranthe guttata HOM05D003519 ORTHO05D004443 7.8e-09 63.5 67 49.3
Migut.L00566 Erythranthe guttata HOM05D003519 ORTHO05D004443 7.8e-09 63.5 67 49.3
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 7.8e-09 63.5 76 48.7
Thecc.01G137200 Theobroma cacao HOM05D003519 ORTHO05D004443 7.8e-09 63.5 68 52.9
Nitab4.5_0000227g0340 Nicotiana tabacum HOM05D003519 ORTHO05D004443 1.3e-08 62.8 63 55.6
QL10p041283 Quercus lobata HOM05D003519 ORTHO05D004443 1.3e-08 62.8 63 52.4
BcaB06g27330 Brassica carinata HOM05D003519 ORTHO05D004443 1.7e-08 62.4 71 53.5
CiPaw.03G118200 Carya illinoinensis HOM05D003519 ORTHO05D004443 1.7e-08 62.4 65 52.3
Glyma.05G194000 Glycine max HOM05D003519 ORTHO05D004443 1.7e-08 62.4 69 47.8
Nn1g08957 Nelumbo nucifera HOM05D003519 ORTHO05D004443 1.7e-08 62.4 70 52.9
PSO063G6904 Papaver somniferum HOM05D003519 ORTHO05D004443 1.7e-08 62.4 76 48.7
PSO832G0337 Papaver somniferum HOM05D003519 ORTHO05D004443 1.7e-08 62.4 76 48.7
Potri.007G102000 Populus trichocarpa HOM05D003519 ORTHO05D004443 1.7e-08 62.4 69 49.3
Sabra05G0055300 Salix brachista HOM05D003519 ORTHO05D004443 1.7e-08 62.4 69 49.3
Ciclev10000587m.g Citrus clementina HOM05D003519 ORTHO05D004443 2.3e-08 62.0 68 51.5
TAR625G0887 Trochodendron aralioides HOM05D003519 ORTHO05D004443 2.3e-08 62.0 68 52.9
BcaB06g27308 Brassica carinata HOM05D003519 ORTHO05D004443 3.0e-08 61.6 70 50.0
C04p45840 Brassica napus HOM05D003519 ORTHO05D004443 3.0e-08 61.6 70 50.0
A04p12190 Brassica napus HOM05D003519 ORTHO05D004443 3.9e-08 61.2 70 50.0
BraA04t16883Z Brassica rapa HOM05D003519 ORTHO05D004443 3.9e-08 61.2 70 50.0
Potri.005G067300 Populus trichocarpa HOM05D003519 ORTHO05D004443 3.9e-08 61.2 70 51.4
Cpa.g.sc37.5 Carica papaya HOM05D003519 ORTHO05D004443 5.1e-08 60.8 68 51.5
Lalb_Chr11g0068601 Lupinus albus HOM05D003519 ORTHO05D004443 5.1e-08 60.8 67 49.3
TWI79G1726 Tripterygium wilfordii HOM05D003519 ORTHO05D004443 5.1e-08 60.8 67 47.8
Haze_25334 Corylus avellana HOM05D003519 ORTHO05D004443 6.6e-08 60.5 61 50.8
ECA238G3965 Erigeron canadensis HOM05D003519 ORTHO05D004443 6.6e-08 60.5 63 52.4
MD15G1134900 Malus domestica HOM05D003519 ORTHO05D004443 6.6e-08 60.5 63 52.4
Solyc04g076520.3 Solanum lycopersicum HOM05D003519 ORTHO05D004443 6.6e-08 60.5 64 53.1
Sopen04g030250 Solanum pennellii HOM05D003519 ORTHO05D004443 6.6e-08 60.5 64 53.1
PGSC0003DMG400009336 Solanum tuberosum HOM05D003519 ORTHO05D004443 6.6e-08 60.5 64 53.1
CSS0008781 Camellia sinensis var. sinensis HOM05D003519 ORTHO05D004443 8.7e-08 60.1 67 49.3
CSS0040411 Camellia sinensis var. sinensis HOM05D003519 ORTHO05D004443 8.7e-08 60.1 67 49.3
DCAR_019993 Daucus carota HOM05D003519 ORTHO05D004443 8.7e-08 60.1 68 51.5
Manes.12G158800 Manihot esculenta HOM05D003519 ORTHO05D004443 8.7e-08 60.1 73 45.2
Peaxi162Scf00711g00512 Petunia axillaris HOM05D003519 ORTHO05D004443 8.7e-08 60.1 72 50.0
VMungo0251G1228 Vigna mungo HOM05D003519 ORTHO05D004443 1.1e-07 59.7 61 52.5
arahy.Tifrunner.gnm1.ann1.02NDWK Arachis hypogaea HOM05D003519 ORTHO05D004443 1.5e-07 59.3 69 46.4
arahy.Tifrunner.gnm1.ann1.CM19QL Arachis hypogaea HOM05D003519 ORTHO05D004443 1.5e-07 59.3 69 47.8
arahy.Tifrunner.gnm1.ann1.I6W5T3 Arachis hypogaea HOM05D003519 ORTHO05D004443 1.5e-07 59.3 69 46.4
CAN.G475.7 Capsicum annuum HOM05D003519 ORTHO05D004443 2.5e-07 58.5 64 51.6
Rhsim08G0000500 Rhododendron simsii HOM05D003519 ORTHO05D004443 2.5e-07 58.5 63 49.2
GSVIVG01022332001 Vitis vinifera HOM05D003519 ORTHO05D004443 2.5e-07 58.5 67 44.8
Ca_16980_v3 Cicer arietinum L. HOM05D003519 ORTHO05D004443 3.3e-07 58.2 67 47.8
Nitab4.5_0003068g0020 Nicotiana tabacum HOM05D003519 ORTHO05D004443 3.3e-07 58.2 61 54.1
Prupe.4G275200 Prunus persica HOM05D003519 ORTHO05D004443 3.3e-07 58.2 63 50.8
Actinidia06577 Actinidia chinensis HOM05D003519 ORTHO05D004443 4.3e-07 57.8 59 57.6
arahy.Tifrunner.gnm1.ann1.JB39ED Arachis hypogaea HOM05D003519 ORTHO05D004443 4.3e-07 57.8 69 47.8
Cc00_g06200 Coffea canephora HOM05D003519 ORTHO05D004443 4.3e-07 57.8 65 50.8
Glyma.06G155700 Glycine max HOM05D003519 ORTHO05D004443 7.3e-07 57.0 67 47.8
RcHm_v2.0_Chr2g0122451 Rosa chinensis HOM05D003519 ORTHO05D004443 7.3e-07 57.0 61 50.8
CANSAT80G2376 Cannabis sativa HOM05D003519 ORTHO05D004443 9.6e-07 56.6 68 48.5
ClCG04G002210 Citrullus lanatus HOM05D003519 ORTHO05D004443 9.6e-07 56.6 67 46.3
MBI03_g31895_MAGBIO Magnolia biondii HOM05D003519 ORTHO05D004443 9.6e-07 56.6 67 43.3
MBI03_g39654_MAGBIO Magnolia biondii HOM05D003519 ORTHO05D004443 9.6e-07 56.6 67 43.3
Sc09g0002240 Simmondsia chinensis HOM05D003519 ORTHO05D004443 9.6e-07 56.6 68 44.1
FvH4_1g24840 Fragaria vesca HOM05D003519 ORTHO05D004443 1.2e-06 56.2 61 49.2
FAN23G1921 Fragaria x ananassa HOM05D003519 ORTHO05D004443 1.2e-06 56.2 61 49.2
FAN28G0413 Fragaria x ananassa HOM05D003519 ORTHO05D004443 1.2e-06 56.2 61 49.2
Glyma.08G002000 Glycine max HOM05D003519 ORTHO05D004443 1.2e-06 56.2 63 47.6
PSO832G1142 Papaver somniferum HOM05D003519 ORTHO05D004443 1.2e-06 56.2 70 47.1
MELO3C008911.2 Cucumis melo HOM05D003519 ORTHO05D004443 1.6e-06 55.8 67 46.3
CsaV3_4G030500 Cucumis sativus L. HOM05D003519 ORTHO05D004443 1.6e-06 55.8 67 46.3
Eucgr.H05140 Eucalyptus grandis HOM05D003519 ORTHO05D004443 1.6e-06 55.8 65 50.8
Ah.04g157880 Amaranthus hybridus HOM05D003519 ORTHO05D004443 2.8e-06 55.1 67 46.3
FAN26G0860 Fragaria x ananassa HOM05D003519 ORTHO05D004443 2.8e-06 55.1 61 47.5
PGR102G0700 Punica granatum HOM05D003519 ORTHO05D004443 2.8e-06 55.1 66 51.5
TPR.G33582 Trifolium pratense HOM05D003519 ORTHO05D004443 2.8e-06 55.1 67 46.3
CDE06G0958 Ceratophyllum demersum HOM05D003519 ORTHO05D004443 3.6e-06 54.7 64 46.9
Medtr3g096670 Medicago truncatula HOM05D003519 ORTHO05D004443 3.6e-06 54.7 67 44.8
ATR0138G021 Amborella trichopoda HOM05D003519 ORTHO05D004443 4.7e-06 54.3 69 40.6
MSTRG.15264 Avicennia marina HOM05D003519 ORTHO05D004443 4.7e-06 54.3 65 46.2
Phvul.009G154700 Phaseolus vulgaris HOM05D003519 ORTHO05D004443 4.7e-06 54.3 69 46.4
Psat5g059880 Pisum sativum HOM05D003519 ORTHO05D004443 4.7e-06 54.3 67 43.3
EL10Ac4g09622 Beta vulgaris HOM05D003519 ORTHO05D004443 6.2e-06 53.9 67 46.3
Medtr8g094150 Medicago truncatula HOM05D003519 ORTHO05D004443 6.2e-06 53.9 77 41.6
Pp3c17_16670 Physcomitrium patens HOM05D003519 ORTHO05D004443 8.1e-06 53.5 63 46.0


User provided reference genes

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