Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 9.1e-159 563.5 288 100.0
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 1.3e-125 453.4 231 100.0
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 1.3e-99 367.1 282 74.5
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 1.6e-70 270.4 345 52.5
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 1.1e-68 264.2 343 50.7
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 1.5e-68 263.8 344 50.9
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 4.8e-67 258.8 342 50.0
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 4.1e-66 255.8 340 50.6
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 4.1e-66 255.8 340 50.6
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 2.6e-65 253.1 358 47.8
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 2.6e-65 253.1 340 49.4
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 7.2e-63 245.0 344 48.8
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 1.1e-60 237.7 339 48.7
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.8e-59 233.0 345 46.4
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 1.7e-51 207.2 344 42.7
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 5.0e-48 195.7 321 44.2
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 2.3e-45 186.8 333 40.8
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 1.7e-43 180.6 344 41.0
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 1.0e-40 171.4 321 39.9
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 2.9e-40 169.9 308 39.0
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 5.5e-39 165.6 267 41.2
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 9.5e-39 164.9 317 37.5
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 4.7e-38 162.5 318 38.1
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 6.1e-38 162.2 280 40.7
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 8.0e-38 161.8 313 38.0
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 1.0e-37 161.4 338 37.9
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 1.4e-37 161.0 285 40.4
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 2.3e-37 160.2 305 39.7
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 4.0e-37 159.5 272 41.5
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 5.2e-37 159.1 303 38.3
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 5.2e-37 159.1 291 40.5
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 5.2e-37 159.1 336 36.6
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 5.2e-37 159.1 313 37.1
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 6.8e-37 158.7 297 39.4
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 8.8e-37 158.3 317 36.9
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 8.8e-37 158.3 282 39.7
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.2e-36 157.9 282 39.7
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.2e-36 157.9 282 39.4
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.2e-36 157.9 273 40.7
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.5e-36 157.5 325 38.2
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 2.0e-36 157.1 267 41.9
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 2.6e-36 156.8 270 41.1
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 2.6e-36 156.8 279 40.9
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 3.4e-36 156.4 278 40.3
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 4.4e-36 156.0 281 39.9
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 5.7e-36 155.6 270 40.4
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 9.8e-36 154.8 276 40.6
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 1.3e-35 154.5 276 40.2
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 1.3e-35 154.5 276 39.9
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 1.7e-35 154.1 304 39.1
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 1.7e-35 154.1 282 39.7
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 2.2e-35 153.7 265 40.8
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 2.8e-35 153.3 296 38.9
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 3.7e-35 152.9 291 40.2
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 4.9e-35 152.5 268 42.5
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 4.9e-35 152.5 276 39.9
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 8.3e-35 151.8 291 37.8
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 2.4e-34 150.2 266 40.6
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 3.1e-34 149.8 338 36.1
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 3.1e-34 149.8 272 39.0
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.1e-34 149.8 272 39.0
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 3.1e-34 149.8 280 38.2
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 4.1e-34 149.4 270 40.4
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 5.4e-34 149.1 280 40.7
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 7.0e-34 148.7 258 40.3
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 9.2e-34 148.3 269 39.8
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 9.2e-34 148.3 278 40.3
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 9.2e-34 148.3 278 40.3
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 2.0e-33 147.1 285 39.6
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 2.7e-33 146.7 260 41.2
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.7e-33 146.7 272 38.6
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 4.5e-33 146.0 263 39.5
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 4.5e-33 146.0 287 37.6
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 5.9e-33 145.6 279 36.2
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 5.9e-33 145.6 277 38.3
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 5.9e-33 145.6 272 39.0
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 1.7e-32 144.1 275 39.3
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.7e-32 144.1 271 38.4
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 5.0e-32 142.5 275 37.1
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 5.0e-32 142.5 276 35.5
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 8.6e-32 141.7 253 39.9
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 8.6e-32 141.7 295 37.6
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 1.5e-31 141.0 287 38.0
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 2.5e-31 140.2 287 38.0
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 2.5e-31 140.2 296 37.5
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 5.6e-31 139.0 249 40.6
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 5.6e-31 139.0 261 36.0
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.6e-30 137.5 213 43.2
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 6.1e-30 135.6 263 36.1
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 1.8e-29 134.0 202 43.6
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 3.0e-29 133.3 164 48.2
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 5.2e-29 132.5 277 37.5
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 5.2e-29 132.5 265 37.7
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 6.8e-29 132.1 278 37.8
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 1.2e-28 131.3 238 39.9
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 4.4e-28 129.4 264 35.6
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 9.8e-28 128.3 269 35.7
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.7e-27 127.5 164 46.3
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.4e-26 124.4 154 50.0
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 1.8e-26 124.0 203 41.9
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 5.4e-26 122.5 212 40.1
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 9.2e-26 121.7 194 41.8
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 7.8e-25 118.6 351 31.3
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 1.0e-24 118.2 96 67.7
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 2.3e-24 117.1 162 43.2
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 3.9e-24 116.3 165 42.4
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 3.9e-24 116.3 169 43.8
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 5.0e-24 115.9 96 66.7
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 1.5e-23 114.4 248 33.9
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 6.2e-22 109.0 186 36.6
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 3.4e-20 103.2 60 83.3
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 7.5e-20 102.1 60 81.7
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 7.5e-20 102.1 104 53.8
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 6.4e-19 99.0 50 96.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 2.4e-18 97.1 50 94.0
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 9.2e-18 95.1 223 36.8
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 4.0e-13 79.7 86 54.7
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 2.2e-11 73.9 132 37.1
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 6.4e-11 72.4 208 29.8
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 3.2e-10 70.1 191 35.6
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 1.6e-09 67.8 79 50.6
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 2.1e-09 67.4 218 26.1
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 1.3e-08 64.7 129 35.7
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 1.7e-08 64.3 57 49.1
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 6.6e-08 62.4 77 48.1
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 9.5e-07 58.5 77 46.8


User provided reference genes

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