Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p45010 Brassica napus HOM05D013606 ORTHO05D015947 7.1e-147 523.9 256 100.0
BolC4t26079H Brassica oleracea HOM05D013606 ORTHO05D015947 7.1e-147 523.9 256 100.0
A04p11290 Brassica napus HOM05D013606 ORTHO05D015947 7.4e-136 487.3 263 92.4
BraA04t16790Z Brassica rapa HOM05D013606 ORTHO05D015947 7.4e-136 487.3 263 92.4
BcaC02g09643 Brassica carinata HOM05D013606 ORTHO05D015947 4.8e-135 484.6 260 95.0
BcaB06g27197 Brassica carinata HOM05D013606 ORTHO05D015947 1.7e-111 406.4 262 81.7
Sp7g03700 Schrenkiella parvula HOM05D013606 ORTHO05D015947 1.2e-58 230.7 274 54.7
Thhalv10028178m.g Eutrema salsugineum HOM05D013606 ORTHO05D015947 1.4e-54 217.2 268 53.0
Aa31LG9G17120 Aethionema arabicum HOM05D006950 ORTHO05D008798 2.2e-39 166.8 266 44.7
AT5G38320 Arabidopsis thaliana HOM05D013606 ORTHO05D015947 4.9e-39 165.6 266 44.4
AL7G52450 Arabidopsis lyrata HOM05D013606 ORTHO05D015947 1.0e-36 157.9 270 44.1
CARHR059460 Cardamine hirsuta HOM05D001683 ORTHO05D001627 1.2e-32 144.4 285 40.4
A02p13880 Brassica napus HOM05D001683 ORTHO05D001627 3.4e-32 142.9 287 40.8
BraA02t06449Z Brassica rapa HOM05D001683 ORTHO05D001627 3.4e-32 142.9 287 40.8
BcaC03g14789 Brassica carinata HOM05D001683 ORTHO05D001627 2.2e-31 140.2 287 40.1
C02p22380 Brassica napus HOM05D001683 ORTHO05D001627 2.2e-31 140.2 287 40.1
BolC2t08390H Brassica oleracea HOM05D001683 ORTHO05D001627 2.2e-31 140.2 287 40.1
Carub.0007s3774 Capsella rubella HOM05D013606 ORTHO05D015947 1.4e-30 137.5 266 40.6
Thhalv10019003m.g Eutrema salsugineum HOM05D001683 ORTHO05D001627 5.5e-30 135.6 286 38.5
Aa31LG2G3450 Aethionema arabicum HOM05D001683 ORTHO05D001627 7.1e-30 135.2 294 39.5
BcaB05g24231 Brassica carinata HOM05D001683 ORTHO05D001627 6.0e-29 132.1 290 37.6
AT1G67050 Arabidopsis thaliana HOM05D001683 ORTHO05D001627 5.1e-28 129.0 286 37.8
SpUn0149_0010 Schrenkiella parvula HOM05D001683 ORTHO05D001627 1.1e-27 127.9 288 38.2
SpUn0173_0010 Schrenkiella parvula HOM05D001683 ORTHO05D001627 1.1e-27 127.9 288 38.2
AL2G25390 Arabidopsis lyrata HOM05D001683 ORTHO05D001627 1.5e-27 127.5 290 37.6
THA.LOC104823858 Tarenaya hassleriana HOM05D001683 ORTHO05D001627 1.9e-27 127.1 300 37.0
Carub.0002s1334 Capsella rubella HOM05D001683 ORTHO05D001627 4.0e-25 119.4 295 36.9
Cpa.g.sc170.65 Carica papaya HOM05D001683 ORTHO05D001627 1.8e-20 104.0 277 33.9
COL.COLO4_09345 Corchorus olitorius HOM05D001683 ORTHO05D001627 3.9e-20 102.8 278 34.9
Atru.chr1.1666 Acer truncatum HOM05D001683 ORTHO05D001627 6.7e-20 102.1 261 36.4
Duzib211G0678 Durio zibethinus HOM05D001683 ORTHO05D001627 5.7e-19 99.0 271 36.2
Thecc.04G132600 Theobroma cacao HOM05D001683 ORTHO05D001627 9.7e-19 98.2 269 34.9
CANSAT78G1410 Cannabis sativa HOM05D001683 ORTHO05D001627 2.2e-18 97.1 279 34.8
Duzib138G0828 Durio zibethinus HOM05D001683 ORTHO05D001627 2.8e-18 96.7 270 36.7
ClCG11G007860 Citrullus lanatus HOM05D001683 ORTHO05D001627 4.8e-18 95.9 261 35.6
Manes.02G069500 Manihot esculenta HOM05D001683 ORTHO05D001627 4.8e-18 95.9 267 37.1
Haze_14165 Corylus avellana HOM05D001683 ORTHO05D001627 6.3e-18 95.5 253 33.2
CiPaw.03G062600 Carya illinoinensis HOM05D001683 ORTHO05D001627 1.4e-17 94.4 270 33.0
Potri.004G098700 Populus trichocarpa HOM05D001683 ORTHO05D001627 3.1e-17 93.2 261 34.9
Cfa023327 Carpinus fangiana HOM05D001683 ORTHO05D001627 1.2e-16 91.3 250 34.0
Manes.01G111000 Manihot esculenta HOM05D001683 ORTHO05D001627 5.9e-16 89.0 269 34.2
Ciclev10012557m.g Citrus clementina HOM05D001683 ORTHO05D001627 7.7e-16 88.6 277 35.4
Cc07_g08750 Coffea canephora HOM05D001683 ORTHO05D001627 3.8e-15 86.3 265 34.7
TWI77G0657 Tripterygium wilfordii HOM05D001683 ORTHO05D001627 1.4e-14 84.3 261 32.6
Sabra04G0081100 Salix brachista HOM05D001683 ORTHO05D001627 1.9e-14 84.0 263 31.6
TAR622G0857 Trochodendron aralioides HOM05D001683 ORTHO05D001627 1.9e-14 84.0 276 33.3
Rhsim08G0082600 Rhododendron simsii HOM05D001683 ORTHO05D001627 2.5e-14 83.6 257 35.8
CsaV3_2G033730 Cucumis sativus L. HOM05D001683 ORTHO05D001627 3.2e-14 83.2 264 35.6
MELO3C008143.2 Cucumis melo HOM05D001683 ORTHO05D001627 4.2e-14 82.8 262 35.9
Potri.017G115700 Populus trichocarpa HOM05D001683 ORTHO05D001627 4.2e-14 82.8 262 32.8
Sabra17G0095900 Salix brachista HOM05D001683 ORTHO05D001627 7.2e-14 82.0 262 34.0
Psat3g098320 Pisum sativum HOM05D001683 ORTHO05D001627 1.2e-13 81.3 263 34.2
QL02p051064 Quercus lobata HOM05D001683 ORTHO05D001627 1.2e-13 81.3 251 32.3
QL12p016580 Quercus lobata HOM05D001683 ORTHO05D001627 1.2e-13 81.3 251 32.3
vmacro18073 Vaccinium macrocarpon HOM05D001683 ORTHO05D001627 1.2e-13 81.3 256 34.4
Phvul.008G006900 Phaseolus vulgaris HOM05D001683 ORTHO05D001627 1.6e-13 80.9 265 34.7
Phvul.004G065200 Phaseolus vulgaris HOM05D001683 ORTHO05D001627 2.1e-13 80.5 262 33.2
Glyma.19G049800 Glycine max HOM05D001683 ORTHO05D001627 2.7e-13 80.1 264 33.3
Lj1g0002100 Lotus japonicus HOM05D001683 ORTHO05D001627 3.6e-13 79.7 256 33.2
VMungo0464G0404 Vigna mungo HOM05D001683 ORTHO05D001627 4.6e-13 79.3 265 33.2
Medtr6g018690 Medicago truncatula HOM05D001683 ORTHO05D001627 7.9e-13 78.6 263 31.9
TPR.G29083 Trifolium pratense HOM05D001683 ORTHO05D001627 1.0e-12 78.2 266 36.1
Oeu050376.1 Olea europaea HOM05D001683 ORTHO05D001627 1.8e-12 77.4 250 32.8
TAR374G1495 Trochodendron aralioides HOM05D001683 ORTHO05D001627 1.8e-12 77.4 279 32.6
Lj2A441T54 Lonicera japonica HOM05D001683 ORTHO05D001627 3.0e-12 76.6 252 32.5
Dinv33952 Davidia involucrata HOM05D001683 ORTHO05D001627 3.9e-12 76.3 257 33.5
VMungo1383G1604 Vigna mungo HOM05D001683 ORTHO05D001627 3.9e-12 76.3 269 33.5
Nn3g17892 Nelumbo nucifera HOM05D001683 ORTHO05D001627 5.1e-12 75.9 243 36.2
TAR629G2615 Trochodendron aralioides HOM05D001683 ORTHO05D001627 5.1e-12 75.9 272 33.1
TPR.G32463 Trifolium pratense HOM05D001683 ORTHO05D001627 6.7e-12 75.5 258 30.2
Gohir.A07G072100 Gossypium hirsutum HOM05D001683 ORTHO05D001627 4.3e-11 72.8 267 30.7
Gorai.001G081000 Gossypium raimondii HOM05D001683 ORTHO05D001627 4.3e-11 72.8 267 30.7
Medtr7g082180 Medicago truncatula HOM05D001683 ORTHO05D001627 4.3e-11 72.8 266 33.5
Oeu059495.1 Olea europaea HOM05D001683 ORTHO05D001627 7.4e-11 72.0 276 30.4
MSTRG.15300 Avicennia marina HOM05D001683 ORTHO05D001627 1.3e-10 71.2 261 32.2
PGSC0003DMG400010416 Solanum tuberosum HOM05D001683 ORTHO05D001627 1.7e-10 70.9 261 32.6
Gohir.D07G076300 Gossypium hirsutum HOM05D001683 ORTHO05D001627 2.2e-10 70.5 267 30.3
Rhsim10G0068100 Rhododendron simsii HOM05D001683 ORTHO05D001627 2.2e-10 70.5 270 30.7
Nitab4.5_0000965g0100 Nicotiana tabacum HOM05D001683 ORTHO05D001627 6.3e-10 68.9 266 33.5
Peaxi162Scf00394g00072 Petunia axillaris HOM05D001683 ORTHO05D001627 6.3e-10 68.9 253 32.0
Peaxi162Scf01445g00123 Petunia axillaris HOM05D001683 ORTHO05D001627 6.3e-10 68.9 295 32.2
Solyc02g063230.1 Solanum lycopersicum HOM05D001683 ORTHO05D001627 6.3e-10 68.9 267 30.7
Nitab4.5_0005631g0010 Nicotiana tabacum HOM05D001683 ORTHO05D001627 1.8e-09 67.4 266 32.0
Psat1g081160 Pisum sativum HOM05D001683 ORTHO05D001627 1.8e-09 67.4 254 30.3
Ca_08076_v3 Cicer arietinum L. HOM05D001683 ORTHO05D001627 2.4e-09 67.0 267 31.8
SalBow5G3454 Salvia bowleyana HOM05D001683 ORTHO05D001627 2.4e-09 67.0 265 29.8
Glyma.18G295900 Glycine max HOM05D001683 ORTHO05D001627 3.1e-09 66.6 274 31.8
Oeu016625.1 Olea europaea HOM05D001683 ORTHO05D001627 3.1e-09 66.6 244 29.9
Sopen02g014300 Solanum pennellii HOM05D001683 ORTHO05D001627 3.1e-09 66.6 258 31.0
Glyma.08G366400 Glycine max HOM05D001683 ORTHO05D001627 5.3e-09 65.9 269 32.0
Sopen02g030810 Solanum pennellii HOM05D001683 ORTHO05D001627 5.3e-09 65.9 250 32.0
Prupe.3G143400 Prunus persica HOM05D001683 ORTHO05D001627 6.9e-09 65.5 278 30.9
Ca_13728_v3 Cicer arietinum L. HOM05D001683 ORTHO05D001627 9.1e-09 65.1 274 30.3
Cc11_g09960 Coffea canephora HOM05D001683 ORTHO05D001627 9.1e-09 65.1 285 28.4
MD09G1253400 Malus domestica HOM05D001683 ORTHO05D001627 9.1e-09 65.1 271 29.9
Glyma.13G045300 Glycine max HOM05D001683 ORTHO05D001627 1.2e-08 64.7 271 31.0
SGA_v2.0_scaffold115G32107 Striga asiatica HOM05D001683 ORTHO05D001627 1.5e-08 64.3 259 30.5
MBI09_g39172_MAGBIO Magnolia biondii HOM05D001683 ORTHO05D001627 2.0e-08 63.9 277 29.2
Lalb_Chr10g0091301 Lupinus albus HOM05D001683 ORTHO05D001627 7.7e-08 62.0 271 31.4
MD17G1245300 Malus domestica HOM05D001683 ORTHO05D001627 7.7e-08 62.0 274 29.2
Sed0012748 Sechium edule HOM05D001683 ORTHO05D001627 1.0e-07 61.6 104 36.5
MSTRG.23579 Avicennia marina HOM05D001683 ORTHO05D001627 1.7e-07 60.8 267 30.3
Lalb_Chr21g0317791 Lupinus albus HOM05D001683 ORTHO05D001627 1.7e-07 60.8 252 31.7
Lj2g0005250 Lotus japonicus HOM05D001683 ORTHO05D001627 2.9e-07 60.1 68 51.5
PGR042G3338 Punica granatum HOM05D001683 ORTHO05D001627 5.0e-07 59.3 283 27.9
PGSC0003DMG400026404 Solanum tuberosum HOM05D001683 ORTHO05D001627 8.5e-07 58.5 247 31.2
DCAR_017187 Daucus carota HOM05D001683 ORTHO05D001627 1.1e-06 58.2 275 29.5
Oeu039733.1 Olea europaea HOM05D001683 ORTHO05D001627 1.1e-06 58.2 269 31.6
arahy.Tifrunner.gnm1.ann1.33FPJE Arachis hypogaea HOM05D001683 ORTHO05D001627 1.4e-06 57.8 203 32.5
CiPaw.04G042800 Carya illinoinensis HOM05D001683 ORTHO05D001627 5.5e-06 55.8 273 27.8
Hma1.2p1_1109F.1_g258100 Hydrangea macrophylla HOM05D001683 ORTHO05D001627 5.5e-06 55.8 269 28.6
arahy.Tifrunner.gnm1.ann1.YVY8FL Arachis hypogaea HOM05D001683 ORTHO05D001627 7.2e-06 55.5 208 32.7
DCAR_023647 Daucus carota HOM05D001683 ORTHO05D001627 7.2e-06 55.5 286 30.4


User provided reference genes

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