Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 7.6e-131 470.7 271 100.0
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 5.4e-129 464.5 271 96.7
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.5e-126 456.4 271 95.6
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.5e-126 456.4 271 95.6
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 1.4e-108 396.7 239 96.2
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 2.6e-99 365.9 239 87.4
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 7.9e-88 327.8 249 82.7
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 5.2e-79 298.5 251 72.5
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 9.7e-70 267.7 250 66.8
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 9.4e-65 251.1 277 63.5
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 9.4e-65 251.1 266 63.2
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 4.0e-63 245.7 253 63.6
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 2.6e-62 243.0 252 61.1
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.3e-61 240.7 278 59.4
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.8e-61 239.6 257 61.1
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 6.1e-56 221.9 254 57.5
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.8e-55 220.3 265 56.2
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 4.4e-54 215.7 268 53.4
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 1.1e-44 184.5 261 50.2
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 7.0e-44 181.8 262 50.4
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 2.3e-42 176.8 263 50.6
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 5.0e-42 175.6 261 50.2
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 9.5e-41 171.4 253 49.0
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.1e-40 170.2 271 47.6
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 2.8e-40 169.9 254 48.0
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 8.0e-40 168.3 258 49.2
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 1.4e-39 167.5 263 46.8
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 7.5e-38 161.8 266 46.6
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 1.3e-37 161.0 252 46.4
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 1.1e-36 157.9 263 48.7
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 7.8e-35 151.8 230 49.6
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.3e-31 140.2 262 45.0
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 2.0e-30 137.1 254 40.2
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 2.6e-30 136.7 254 40.2
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 1.7e-29 134.0 256 40.2
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.9e-29 133.3 255 40.0
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 4.9e-29 132.5 254 43.7
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 2.4e-28 130.2 241 41.9
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 4.1e-28 129.4 265 39.2
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.6e-27 127.5 255 40.4
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 4.6e-27 125.9 258 40.7
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 6.0e-27 125.6 255 41.6
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 6.0e-27 125.6 244 43.0
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 6.0e-27 125.6 274 39.4
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 1.3e-26 124.4 246 42.3
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 2.3e-26 123.6 247 42.1
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 3.9e-26 122.9 267 39.0
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 1.1e-25 121.3 243 43.2
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 1.5e-25 120.9 257 39.7
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 2.5e-25 120.2 257 39.7
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 4.3e-25 119.4 254 40.9
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 5.6e-25 119.0 245 40.0
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 9.5e-25 118.2 260 37.3
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 2.1e-24 117.1 240 41.2
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 2.1e-24 117.1 252 39.7
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 2.1e-24 117.1 244 41.0
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 2.8e-24 116.7 246 38.6
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 3.6e-24 116.3 253 39.9
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 3.6e-24 116.3 246 38.6
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 6.2e-24 115.5 258 38.8
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 8.1e-24 115.2 245 38.8
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 8.1e-24 115.2 247 38.5
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 1.1e-23 114.8 212 41.5
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 1.8e-23 114.0 248 36.3
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 3.1e-23 113.2 247 40.5
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 4.0e-23 112.8 245 37.6
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 6.8e-23 112.1 243 38.7
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 6.8e-23 112.1 238 38.2
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 1.2e-22 111.3 239 41.4
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.4e-22 109.8 239 40.6
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 5.8e-22 109.0 255 37.6
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 7.6e-22 108.6 230 40.9
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.3e-21 107.8 259 39.4
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 1.1e-20 104.8 235 37.9
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 1.1e-20 104.8 252 36.1
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.9e-20 104.0 251 35.5
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 3.2e-20 103.2 236 37.7
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 7.1e-20 102.1 227 37.9
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 7.1e-20 102.1 239 37.2
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 9.2e-20 101.7 209 38.8
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 9.2e-20 101.7 232 38.8
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 2.1e-19 100.5 250 37.2
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.7e-19 100.1 234 37.6
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 3.5e-19 99.8 216 40.7
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 3.5e-19 99.8 234 38.5
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 4.6e-19 99.4 236 37.7
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.0e-18 98.2 287 34.8
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 1.0e-18 98.2 245 40.4
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 1.0e-18 98.2 250 34.4
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.3e-18 97.8 243 36.6
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.7e-18 97.4 249 36.5
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 8.7e-18 95.1 232 37.5
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.5e-17 94.4 246 36.6
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 1.9e-17 94.0 266 34.2
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.3e-17 93.2 250 35.6
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.3e-17 93.2 250 35.6
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 4.3e-17 92.8 243 35.0
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 5.6e-17 92.4 234 37.6
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 2.1e-16 90.5 234 37.6
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 6.2e-16 89.0 215 37.2
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 1.8e-15 87.4 182 36.8
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 3.1e-15 86.7 224 36.6
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 3.1e-15 86.7 250 34.4
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 4.0e-15 86.3 245 33.9
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 5.3e-15 85.9 242 36.4
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 6.9e-15 85.5 208 43.8
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 1.2e-14 84.7 211 36.5
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 1.2e-14 84.7 204 36.8
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 1.5e-14 84.3 252 34.5
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 7.6e-14 82.0 212 36.3
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 7.6e-14 82.0 219 37.0
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 1.3e-13 81.3 247 38.9
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 6.4e-13 79.0 258 32.6
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 2.4e-12 77.0 214 39.7
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.2e-12 76.3 207 34.8
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 7.1e-12 75.5 268 29.9
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 7.1e-12 75.5 153 37.9
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 9.3e-12 75.1 247 33.6
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.2e-11 74.7 200 35.5
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 2.7e-11 73.6 128 49.2
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.0e-10 70.1 200 34.5
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 3.0e-10 70.1 121 40.5
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 3.9e-10 69.7 205 39.5
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 5.1e-10 69.3 205 35.1
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 8.7e-10 68.6 120 41.7
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.1e-09 68.2 158 36.7
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 1.5e-09 67.8 222 32.4
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 1.9e-09 67.4 127 40.2
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 4.3e-09 66.2 306 26.8
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 7.3e-09 65.5 144 38.2
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 1.6e-08 64.3 173 32.4
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 1.6e-08 64.3 214 30.8
A01p38570 Brassica napus HOM05D061175 ORTHO05D005518 1.4e-07 61.2 48 72.9
A01p38790 Brassica napus HOM05D061175 ORTHO05D005518 1.4e-07 61.2 48 72.9
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.8e-07 60.8 206 29.6
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 4.0e-07 59.7 242 31.0
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 6.9e-07 58.9 201 34.3
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 9.0e-07 58.5 267 33.0
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.5e-06 57.8 187 32.6
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 3.4e-06 56.6 173 31.2
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 3.4e-06 56.6 206 28.2
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 4.5e-06 56.2 173 31.8


User provided reference genes

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