Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p44880 Brassica napus HOM05D004905 ORTHO05D005456 0.0e+00 1083.2 600 100.0
A04p11140 Brassica napus HOM05D004905 ORTHO05D005456 1.5e-283 979.2 615 91.7
BraA04t16780Z Brassica rapa HOM05D004905 ORTHO05D005456 1.5e-280 969.1 602 92.0
BolC4t26067H Brassica oleracea HOM05D004905 ORTHO05D005456 2.1e-258 895.6 563 91.8
BcaB06g27171 Brassica carinata HOM05D004905 ORTHO05D005456 4.6e-245 851.3 603 83.3
BcaC02g09630 Brassica carinata HOM05D004905 ORTHO05D005456 4.6e-213 745.0 480 90.6
Sp7g03910 Schrenkiella parvula HOM05D004905 ORTHO05D005456 2.8e-210 735.7 601 72.7
Carub.0005s1253 Capsella rubella HOM05D004905 ORTHO05D005456 1.6e-157 560.5 493 67.7
AL7G52720 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 2.6e-155 553.1 568 61.3
Thhalv10027702m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 2.5e-150 536.6 610 59.3
AT5G38150 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 4.4e-147 525.8 569 59.1
AL2G25050 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 2.5e-142 510.0 602 54.0
Aa31LG2G3310 Aethionema arabicum HOM05D004905 ORTHO05D005456 8.3e-138 495.0 609 52.7
Carub.0002s1304 Capsella rubella HOM05D004905 ORTHO05D005456 1.6e-133 480.7 638 50.5
CARHR058960 Cardamine hirsuta HOM05D004905 ORTHO05D005456 2.8e-133 479.9 613 52.4
Sp5g21810 Schrenkiella parvula HOM05D004905 ORTHO05D005456 1.2e-131 474.6 615 51.9
AT1G66840 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 5.1e-127 459.1 603 51.6
BcaB03g15228 Brassica carinata HOM05D004905 ORTHO05D005456 3.6e-125 453.0 608 51.0
Aa31LG9G17230 Aethionema arabicum HOM05D004905 ORTHO05D005456 8.9e-124 448.4 584 52.6
C06p40220 Brassica napus HOM05D000005 ORTHO05D005456 1.1e-118 431.4 612 49.3
BraA07t30992Z Brassica rapa HOM05D004905 ORTHO05D005456 7.3e-118 428.7 610 49.7
BcaC08g46129 Brassica carinata HOM05D004905 ORTHO05D005456 4.0e-116 422.9 611 48.8
A07p33640 Brassica napus HOM05D004905 ORTHO05D005456 4.0e-116 422.9 610 48.9
BolC6t39105H Brassica oleracea HOM05D004905 ORTHO05D005456 2.0e-115 420.6 579 50.1
THA.LOC104823849 Tarenaya hassleriana HOM05D004905 ORTHO05D005456 5.8e-115 419.1 618 49.0
Thhalv10018290m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 3.4e-91 340.1 616 44.0
Duzib138G0198 Durio zibethinus HOM05D004905 ORTHO05D005456 1.1e-81 308.5 589 39.4
QL04p012071 Quercus lobata HOM05D004905 ORTHO05D005456 5.5e-81 306.2 627 39.9
TPR.G16546 Trifolium pratense HOM05D004905 ORTHO05D005456 2.7e-80 303.9 575 40.0
QL02p050316 Quercus lobata HOM05D004905 ORTHO05D005456 1.0e-79 302.0 628 39.6
COL.COLO4_09375 Corchorus olitorius HOM05D004905 ORTHO05D005456 3.0e-79 300.4 619 38.8
Medtr7g082660 Medicago truncatula HOM05D004905 ORTHO05D005456 3.9e-79 300.1 632 38.3
Ciclev10011170m.g Citrus clementina HOM05D004905 ORTHO05D005456 3.1e-76 290.4 620 37.7
Psat3g097720 Pisum sativum HOM05D004905 ORTHO05D005456 6.9e-76 289.3 619 37.2
Eucgr.F02791 Eucalyptus grandis HOM05D004905 ORTHO05D005456 3.4e-75 287.0 617 38.2
Ca_08091_v3 Cicer arietinum L. HOM05D004905 ORTHO05D005456 5.9e-75 286.2 587 38.3
TAR426G0001 Trochodendron aralioides HOM05D004905 ORTHO05D005456 1.4e-73 281.6 595 37.0
Sabra17G0098200 Salix brachista HOM05D004905 ORTHO05D005456 2.3e-71 274.2 601 36.9
Potri.017G118900 Populus trichocarpa HOM05D004905 ORTHO05D005456 3.0e-71 273.9 584 37.5
Haze_14185 Corylus avellana HOM05D004905 ORTHO05D005456 5.1e-71 273.1 597 38.0
TAR535G0011 Trochodendron aralioides HOM05D004905 ORTHO05D005456 1.5e-70 271.6 625 35.8
Oeu030795.1 Olea europaea HOM05D004905 ORTHO05D005456 7.4e-70 269.2 569 36.7
Potri.004G095800 Populus trichocarpa HOM05D004905 ORTHO05D005456 1.3e-69 268.5 625 36.8
Cfa007892 Carpinus fangiana HOM05D004905 ORTHO05D005456 5.9e-67 259.6 536 37.9
Cpa.g.sc170.31 Carica papaya HOM05D004905 ORTHO05D005456 3.2e-65 253.8 618 35.1
Lalb_Chr04g0257631 Lupinus albus HOM05D004905 ORTHO05D005456 4.2e-65 253.4 626 34.2
Thecc.04G128800 Theobroma cacao HOM05D004905 ORTHO05D005456 1.6e-64 251.5 617 35.7
Dinv33966 Davidia involucrata HOM05D001288 ORTHO05D005456 8.8e-63 245.7 621 34.6
Atru.chr1.1616 Acer truncatum HOM05D004905 ORTHO05D005456 1.5e-62 245.0 620 35.0
arahy.Tifrunner.gnm1.ann1.00EJBM Arachis hypogaea HOM05D004905 ORTHO05D005456 2.0e-62 244.6 591 35.5
arahy.Tifrunner.gnm1.ann1.VL1078 Arachis hypogaea HOM05D004905 ORTHO05D005456 2.0e-62 244.6 591 35.5
TWI53G1125 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 2.6e-62 244.2 604 35.3
CSS0040498 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 9.7e-62 242.3 565 35.9
Prupe.3G148500 Prunus persica HOM05D004905 ORTHO05D005456 1.7e-61 241.5 589 34.8
CANSAT11G1581 Cannabis sativa HOM05D004905 ORTHO05D005456 3.7e-61 240.4 586 33.4
Glyma.18G294100 Glycine max HOM05D004905 ORTHO05D005456 3.1e-60 237.3 588 34.5
VMungo0464G1170 Vigna mungo HOM05D004905 ORTHO05D005456 3.5e-59 233.8 577 34.5
MSTRG.23594 Avicennia marina HOM05D004905 ORTHO05D005456 2.7e-56 224.2 622 31.8
Phvul.004G002200 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 6.1e-56 223.0 570 33.5
Nitab4.5_0011439g0010 Nicotiana tabacum HOM05D004905 ORTHO05D005456 3.9e-55 220.3 499 36.3
Actinidia15900 Actinidia chinensis HOM05D004905 ORTHO05D005456 1.1e-54 218.8 480 36.0
Lalb_Chr10g0091451 Lupinus albus HOM05D004905 ORTHO05D005456 2.0e-54 218.0 630 33.3
CiPaw.03G064700 Carya illinoinensis HOM05D004905 ORTHO05D005456 2.6e-54 217.6 597 34.5
DCAR_010704 Daucus carota HOM05D004905 ORTHO05D005456 3.3e-54 217.2 628 32.5
Sed0000790 Sechium edule HOM05D004905 ORTHO05D005456 4.4e-54 216.9 588 34.0
arahy.Tifrunner.gnm1.ann1.NNR4KN Arachis hypogaea HOM05D004905 ORTHO05D005456 1.3e-53 215.3 587 34.2
arahy.Tifrunner.gnm1.ann1.98PLAU Arachis hypogaea HOM05D004905 ORTHO05D005456 1.7e-53 214.9 587 34.2
Manes.02G071500 Manihot esculenta HOM05D004905 ORTHO05D005456 1.7e-53 214.9 640 34.4
RcHm_v2.0_Chr2g0123711 Rosa chinensis HOM05D004905 ORTHO05D005456 4.8e-53 213.4 586 32.6
Aqoxy3G04036 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 6.3e-53 213.0 582 32.8
Migut.H00239 Erythranthe guttata HOM05D004905 ORTHO05D005456 8.2e-53 212.6 637 33.9
Nn3g17953 Nelumbo nucifera HOM05D004905 ORTHO05D005456 8.2e-53 212.6 619 31.5
PSO478G4495 Papaver somniferum HOM05D004905 ORTHO05D005456 1.1e-52 212.2 569 32.0
TWI74G1312 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 2.4e-52 211.1 472 37.1
Solyc02g086350.3 Solanum lycopersicum HOM05D004905 ORTHO05D005456 9.1e-52 209.1 619 32.0
FvH4_1g25551 Fragaria vesca HOM05D004905 ORTHO05D005456 2.6e-51 207.6 592 30.7
EL10Ac2g04529 Beta vulgaris HOM05D004905 ORTHO05D005456 5.9e-51 206.5 549 33.3
FAN19G0313 Fragaria x ananassa HOM05D004905 ORTHO05D005456 5.9e-51 206.5 592 30.6
FAN26G1687 Fragaria x ananassa HOM05D004905 ORTHO05D005456 2.9e-50 204.1 592 30.2
Lj1g0028143 Lotus japonicus HOM05D004905 ORTHO05D005456 3.8e-50 203.8 586 33.3
FAN28G0686 Fragaria x ananassa HOM05D004905 ORTHO05D005456 5.0e-50 203.4 592 30.2
DCAR_011263 Daucus carota HOM05D004905 ORTHO05D005456 1.1e-49 202.2 522 33.5
Gorai.007G184500 Gossypium raimondii HOM05D004905 ORTHO05D005456 1.1e-49 202.2 579 33.0
PSO017G0866 Papaver somniferum HOM05D004905 ORTHO05D005456 1.5e-49 201.8 562 31.3
Peaxi162Scf00877g00001 Petunia axillaris HOM05D004905 ORTHO05D005456 1.5e-49 201.8 569 33.4
VMungo1383G0301 Vigna mungo HOM05D004905 ORTHO05D005456 1.2e-48 198.7 588 33.2
Nitab4.5_0000753g0160 Nicotiana tabacum HOM05D004905 ORTHO05D005456 2.7e-48 197.6 499 33.9
Sopen02g031010 Solanum pennellii HOM05D004905 ORTHO05D005456 4.7e-48 196.8 617 31.1
Gohir.D11G172100 Gossypium hirsutum HOM05D004905 ORTHO05D005456 2.3e-47 194.5 561 33.3
Lsat_1_v5_gn_2_80961 Lactuca sativa HOM05D004905 ORTHO05D005456 2.3e-47 194.5 549 31.5
Glyma.19G001900 Glycine max HOM05D004905 ORTHO05D005456 1.5e-46 191.8 574 33.1
Nn4g23955 Nelumbo nucifera HOM05D004905 ORTHO05D005456 2.0e-46 191.4 588 31.6
SGA_v2.0_scaffold202G41468 Striga asiatica HOM05D004905 ORTHO05D005456 2.0e-46 191.4 589 30.9
MD09G1256700 Malus domestica HOM05D004905 ORTHO05D005456 9.8e-46 189.1 573 31.2
AUR62009040 Chenopodium quinoa HOM05D004905 ORTHO05D005456 4.8e-45 186.8 586 30.9
Rhsim10G0072700 Rhododendron simsii HOM05D004905 ORTHO05D005456 4.8e-45 186.8 591 32.3
Lj4P184T26 Lonicera japonica HOM05D004905 ORTHO05D005456 6.3e-45 186.4 479 33.2
PGSC0003DMG400026397 Solanum tuberosum HOM05D004905 ORTHO05D005456 8.3e-45 186.0 576 31.6
Gohir.A11G165900 Gossypium hirsutum HOM05D004905 ORTHO05D005456 4.1e-44 183.7 576 31.1
Gohir.D07G181800 Gossypium hirsutum HOM05D004905 ORTHO05D005456 9.1e-44 182.6 583 32.4
Gohir.A07G175500 Gossypium hirsutum HOM05D004905 ORTHO05D005456 3.5e-43 180.6 585 32.1
vmacro22954 Vaccinium macrocarpon HOM05D004905 ORTHO05D005456 3.5e-43 180.6 585 32.3
Gorai.001G202800 Gossypium raimondii HOM05D004905 ORTHO05D005456 2.2e-42 177.9 585 32.3
Hund13701 Selenicereus undatus HOM05D004905 ORTHO05D005456 6.5e-42 176.4 545 30.1
SalBow3G3699 Salvia bowleyana HOM05D004905 ORTHO05D005456 8.5e-42 176.0 618 29.0
CAN.G625.56 Capsicum annuum HOM05D004905 ORTHO05D005456 5.5e-41 173.3 502 31.3
ECA238G0899 Erigeron canadensis HOM05D004905 ORTHO05D005456 2.1e-40 171.4 544 30.1
Glyma.02G089100 Glycine max HOM05D001288 ORTHO05D001123 4.7e-40 170.2 505 33.1
ClCG11G007710 Citrullus lanatus HOM05D004905 ORTHO05D005456 3.0e-39 167.5 581 30.6
CDE02G1873 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 4.0e-39 167.2 489 31.5
Zm00001eb156080 Zea mays HOM05D004905 ORTHO05D005456 9.8e-38 162.5 575 28.7
CsaV3_2G033850 Cucumis sativus L. HOM05D004905 ORTHO05D005456 4.9e-37 160.2 581 31.0
Phvul.008G008400 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 3.1e-36 157.5 588 30.8
Sc10g0001050 Simmondsia chinensis HOM05D004905 ORTHO05D005456 3.1e-36 157.5 569 29.3
MELO3C008158.2 Cucumis melo HOM05D004905 ORTHO05D005456 3.5e-35 154.1 590 29.3
Lj2C439T5 Lonicera japonica HOM05D004905 ORTHO05D005456 4.5e-35 153.7 561 30.1
PGR004G1909 Punica granatum HOM05D004905 ORTHO05D005456 3.3e-33 147.5 594 30.1
Hma1.2p1_0500F.1_g167210 Hydrangea macrophylla HOM05D004905 ORTHO05D005456 2.1e-32 144.8 509 30.3
AUR62023266 Chenopodium quinoa HOM05D004905 ORTHO05D005456 6.1e-32 143.3 586 28.7
CSS0018291 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 1.0e-31 142.5 344 36.0
unitig_899.g14515 Utricularia gibba HOM05D004905 ORTHO05D005456 1.4e-31 142.1 486 30.7
HanXRQChr09g0262681 Helianthus annuus HOM05D004905 ORTHO05D005456 2.6e-30 137.9 482 29.7
Cc07_g08530 Coffea canephora HOM05D004905 ORTHO05D005456 2.2e-29 134.8 618 28.6
Oeu041980.1 Olea europaea HOM05D004905 ORTHO05D005456 5.4e-28 130.2 572 28.3
ATR0681G096 Amborella trichopoda HOM05D004905 ORTHO05D005456 2.9e-26 124.4 591 26.7
GSVIVG01030977001 Vitis vinifera HOM05D004905 ORTHO05D005456 1.5e-25 122.1 307 34.5
Ah.10g037620 Amaranthus hybridus HOM05D004905 ORTHO05D005456 2.5e-25 121.3 511 29.2
MD17G1250200 Malus domestica HOM05D004905 ORTHO05D005456 7.3e-25 119.8 393 29.8
ECA232G5032 Erigeron canadensis HOM05D004905 ORTHO05D005456 8.0e-24 116.3 561 26.4
Dinv34793 Davidia involucrata HOM05D004905 ORTHO05D005456 3.4e-22 110.9 337 31.8
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 3.2e-20 104.4 591 25.5
HanXRQChr11g0325151 Helianthus annuus HOM05D004905 ORTHO05D005456 3.2e-20 104.4 464 27.6
HanXRQChr07g0190621 Helianthus annuus HOM05D004905 ORTHO05D005456 7.8e-19 99.8 236 33.1
Os01g0692300 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 1.7e-18 98.6 568 25.5
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 2.5e-17 94.7 585 23.1
CARHR214590 Cardamine hirsuta HOM05D004905 ORTHO05D005456 3.3e-17 94.4 77 67.5
Lsat_1_v5_gn_4_155561 Lactuca sativa HOM05D004905 ORTHO05D005456 7.3e-17 93.2 474 25.7
CDE08G0600 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 9.5e-17 92.8 385 27.0
Aqoxy4G00894 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 4.7e-16 90.5 193 36.8
unitig_37.g12374 Utricularia gibba HOM05D004905 ORTHO05D005456 1.1e-15 89.4 406 28.8
Glyma.05G002000 Glycine max HOM05D004905 ORTHO05D005456 1.4e-15 89.0 553 26.2
Haze_04421 Corylus avellana HOM05D004905 ORTHO05D019407 1.8e-15 88.6 176 39.8
AUR62023221 Chenopodium quinoa HOM05D004905 ORTHO05D005456 4.0e-15 87.4 243 33.7
HanXRQChr12g0357381 Helianthus annuus HOM05D004905 ORTHO05D005456 4.0e-15 87.4 552 25.5
Sc03g0011630 Simmondsia chinensis HOM05D001827 ORTHO05D001790 6.8e-15 86.7 393 26.7
AUR62023222 Chenopodium quinoa HOM05D004905 ORTHO05D005456 8.9e-15 86.3 215 30.7
Os05g0550100 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 8.9e-15 86.3 262 28.6
Glyma.02G301400 Glycine max HOM05D001827 ORTHO05D001790 2.9e-13 81.3 660 23.2
Eucgr.F02039 Eucalyptus grandis HOM05D001827 ORTHO05D001790 3.7e-13 80.9 596 22.5
Hund23030 Selenicereus undatus HOM05D001827 ORTHO05D001790 1.9e-12 78.6 492 23.2
C03p16210 Brassica napus HOM05D001827 ORTHO05D001790 3.2e-12 77.8 592 25.2
arahy.Tifrunner.gnm1.ann1.21F8WZ Arachis hypogaea HOM05D001827 ORTHO05D001790 9.2e-12 76.3 595 22.5
arahy.Tifrunner.gnm1.ann1.5CFI8R Arachis hypogaea HOM05D001827 ORTHO05D001790 1.6e-11 75.5 595 22.5
HPP92_008194 Vanilla planifolia HOM05D004905 ORTHO05D005456 1.6e-11 75.5 303 25.4
AUR62016892 Chenopodium quinoa HOM05D022647 ORTHO05D005456 1.3e-10 72.4 379 27.2
A03p13780 Brassica napus HOM05D001827 ORTHO05D001790 1.7e-10 72.0 596 23.7
Aqoxy4G01116 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 2.3e-10 71.6 178 31.5
THA.LOC104817709 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 2.3e-10 71.6 599 23.4
Zm00001eb342860 Zea mays HOM05D004905 ORTHO05D005456 2.3e-10 71.6 308 26.3
Ah.06g180970 Amaranthus hybridus HOM05D001827 ORTHO05D001790 3.0e-10 71.2 486 23.7
Oeu046939.1 Olea europaea HOM05D001827 ORTHO05D001790 6.6e-10 70.1 601 24.1
Oeu005481.1 Olea europaea HOM05D001827 ORTHO05D001790 1.5e-09 68.9 474 23.0
PGR083G1584 Punica granatum HOM05D001827 ORTHO05D001790 1.5e-09 68.9 472 24.2
MBI14_g13533_MAGBIO Magnolia biondii HOM05D001827 ORTHO05D001790 3.3e-09 67.8 478 22.2
BraA03t10681Z Brassica rapa HOM05D001827 ORTHO05D001790 4.3e-09 67.4 594 23.6
Sed0007556 Sechium edule HOM05D001827 ORTHO05D001790 2.8e-08 64.7 466 23.2
CANSAT11G0161 Cannabis sativa HOM05D001827 ORTHO05D001790 3.6e-08 64.3 598 23.1
TPR.G8584 Trifolium pratense HOM05D001827 ORTHO05D001790 3.6e-08 64.3 437 22.7
CDE02G3428 Ceratophyllum demersum HOM05D001827 ORTHO05D001790 8.1e-08 63.2 589 22.6
THA.LOC104811675 Tarenaya hassleriana HOM05D001827 ORTHO05D001790 8.1e-08 63.2 619 23.1
Gohir.A01G092700 Gossypium hirsutum HOM05D001827 ORTHO05D001790 3.1e-07 61.2 471 22.7
AUR62016893 Chenopodium quinoa HOM05D022647 ORTHO05D005456 4.0e-07 60.8 248 33.9
AUR62044563 Chenopodium quinoa HOM05D022647 ORTHO05D005456 4.0e-07 60.8 248 33.9
SEGI_23448 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 5.2e-07 60.5 275 25.8
MD11G1032400 Malus domestica HOM05D001827 ORTHO05D001790 8.9e-07 59.7 366 23.2
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 8.9e-07 59.7 527 22.6
AUR62039051 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.2e-06 59.3 156 41.7
Lj1C892G3 Lonicera japonica HOM05D001827 ORTHO05D001790 1.2e-06 59.3 383 23.2
Actinidia04995 Actinidia chinensis HOM05D001827 ORTHO05D001790 3.4e-06 57.8 356 24.2
AL8G31440 Arabidopsis lyrata HOM05D001827 ORTHO05D001790 4.4e-06 57.4 596 24.0
Lalb_Chr15g0082201 Lupinus albus HOM05D001827 ORTHO05D001790 4.4e-06 57.4 473 22.8
QL06p049807 Quercus lobata HOM05D004905 ORTHO05D005456 7.6e-06 56.6 229 29.3
AUR62016890 Chenopodium quinoa HOM05D022647 ORTHO05D005456 9.9e-06 56.2 265 28.7


User provided reference genes

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