Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p44470 Brassica napus HOM05D006674 ORTHO05D007954 5.5e-261 904.0 560 100.0
BolC4t26017H Brassica oleracea HOM05D006674 ORTHO05D007954 2.6e-258 895.2 560 99.6
A04p10750 Brassica napus HOM05D006674 ORTHO05D007954 1.7e-249 865.9 560 97.0
BraA04t16739Z Brassica rapa HOM05D006674 ORTHO05D007954 7.8e-247 857.1 560 96.4
BcaC02g09589 Brassica carinata HOM05D006674 ORTHO05D007954 2.3e-246 855.5 560 90.7
BcaB06g27104 Brassica carinata HOM05D006674 ORTHO05D007954 5.4e-224 781.2 566 83.7
Sp7g04510 Schrenkiella parvula HOM05D006674 ORTHO05D007954 6.9e-203 711.1 565 77.5
AL7G46330 Arabidopsis lyrata HOM05D006674 ORTHO05D007954 6.1e-183 644.8 558 79.2
Thhalv10027712m.g Eutrema salsugineum HOM05D006674 ORTHO05D007954 5.1e-182 641.7 569 73.1
Carub.0007s3275 Capsella rubella HOM05D006674 ORTHO05D007954 1.1e-173 614.0 566 76.3
Aa31LG9G17490 Aethionema arabicum HOM05D006674 ORTHO05D007954 2.8e-164 582.8 568 68.0
THA.LOC104805245 Tarenaya hassleriana HOM05D006674 ORTHO05D007954 9.2e-139 498.0 570 65.8
AT5G37590 Arabidopsis thaliana HOM05D006674 ORTHO05D007954 3.9e-129 466.1 561 63.6
CARHR215300 Cardamine hirsuta HOM05D006674 ORTHO05D007954 1.3e-116 424.5 309 75.1
TWI77G1007 Tripterygium wilfordii HOM05D006674 ORTHO05D007954 3.9e-113 412.9 554 54.3
Dinv28183 Davidia involucrata HOM05D006674 ORTHO05D007954 4.3e-112 409.5 568 59.5
Duzib133G1445 Durio zibethinus HOM05D006674 ORTHO05D007954 7.1e-107 392.1 509 61.7
Atru.chr1.1984 Acer truncatum HOM05D006674 ORTHO05D007954 1.2e-106 391.3 562 58.5
CSS0023224 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 2.1e-103 380.6 561 57.2
GSVIVG01030703001 Vitis vinifera HOM05D006674 ORTHO05D007954 3.6e-103 379.8 562 58.7
Thecc.04G053800 Theobroma cacao HOM05D006674 ORTHO05D007954 4.7e-103 379.4 573 56.9
Potri.004G085200 Populus trichocarpa HOM05D006674 ORTHO05D007954 1.3e-100 371.3 567 55.9
Nn4g24371 Nelumbo nucifera HOM05D006674 ORTHO05D007954 1.2e-98 364.8 533 51.8
Cc07_g13280 Coffea canephora HOM05D006674 ORTHO05D007954 1.6e-98 364.4 555 55.7
MD17G1268600 Malus domestica HOM05D006674 ORTHO05D007954 6.6e-97 359.0 535 49.5
Eucgr.F02873 Eucalyptus grandis HOM05D006674 ORTHO05D007954 3.3e-96 356.7 510 52.2
Phvul.001G229300 Phaseolus vulgaris HOM05D006674 ORTHO05D007954 1.6e-95 354.4 499 54.1
TPR.G24904 Trifolium pratense HOM05D006674 ORTHO05D007954 4.8e-95 352.8 537 52.0
Actinidia28801 Actinidia chinensis HOM05D006674 ORTHO05D007954 4.0e-94 349.7 572 48.4
Sc11g0004590 Simmondsia chinensis HOM05D006674 ORTHO05D007954 9.0e-94 348.6 566 48.4
Migut.H02229 Erythranthe guttata HOM05D006674 ORTHO05D007954 1.5e-93 347.8 542 53.5
Glyma.18G041200 Glycine max HOM05D006674 ORTHO05D007954 5.8e-93 345.9 537 51.4
Glyma.11G215400 Glycine max HOM05D006674 ORTHO05D007954 7.6e-93 345.5 532 51.1
Manes.01G119600 Manihot esculenta HOM05D006674 ORTHO05D007954 7.6e-93 345.5 472 61.9
Lalb_Chr15g0084971 Lupinus albus HOM05D006674 ORTHO05D007954 3.2e-91 340.1 510 50.8
Aqoxy5G02269 Aquilegia oxysepala HOM05D006674 ORTHO05D007954 9.3e-91 338.6 555 55.7
RcHm_v2.0_Chr3g0491391 Rosa chinensis HOM05D006674 ORTHO05D007954 2.7e-90 337.0 521 50.9
Medtr3g065220 Medicago truncatula HOM05D006674 ORTHO05D007954 3.5e-90 336.7 538 51.3
Lj6g0000042 Lotus japonicus HOM05D006674 ORTHO05D007954 7.9e-90 335.5 530 50.0
CsaV3_3G017830 Cucumis sativus L. HOM05D006674 ORTHO05D007954 8.7e-89 332.0 556 53.1
Solyc11g011390.3 Solanum lycopersicum HOM05D006674 ORTHO05D007954 1.9e-88 330.9 506 58.5
Psat5g120320 Pisum sativum HOM05D006674 ORTHO05D007954 3.3e-88 330.1 537 49.5
FvH4_1g30190 Fragaria vesca HOM05D006674 ORTHO05D007954 7.4e-88 328.9 564 49.1
Sabra04G0056300 Salix brachista HOM05D006674 ORTHO05D007954 7.4e-88 328.9 565 53.3
Gohir.A07G073700 Gossypium hirsutum HOM05D006674 ORTHO05D007954 9.6e-88 328.6 575 53.2
vmacro18526 Vaccinium macrocarpon HOM05D006674 ORTHO05D007954 1.3e-87 328.2 565 52.6
Sed0023155 Sechium edule HOM05D006674 ORTHO05D007954 4.8e-87 326.2 550 53.6
CiPaw.03G073400 Carya illinoinensis HOM05D006674 ORTHO05D007954 1.4e-86 324.7 478 59.0
HanXRQChr09g0259811 Helianthus annuus HOM05D006674 ORTHO05D007954 2.4e-86 323.9 465 60.9
arahy.Tifrunner.gnm1.ann1.M54V7M Arachis hypogaea HOM05D006674 ORTHO05D007954 2.9e-84 317.0 527 49.9
Sopen11g006190 Solanum pennellii HOM05D006674 ORTHO05D007954 7.9e-82 308.9 541 54.7
Haze_14280 Corylus avellana HOM05D006674 ORTHO05D007954 1.5e-80 304.7 442 53.2
Ciclev10011395m.g Citrus clementina HOM05D006674 ORTHO05D007954 9.6e-80 302.0 554 51.1
Lsat_1_v5_gn_1_78040 Lactuca sativa HOM05D006674 ORTHO05D007954 1.3e-79 301.6 484 51.4
Nitab4.5_0001650g0150 Nicotiana tabacum HOM05D006674 ORTHO05D007954 1.3e-79 301.6 570 45.6
ECA236G3280 Erigeron canadensis HOM05D006674 ORTHO05D007954 5.8e-77 292.7 468 48.9
Gorai.001G082800 Gossypium raimondii HOM05D006674 ORTHO05D007954 8.4e-76 288.9 575 49.4
Prupe.3G166300 Prunus persica HOM05D006674 ORTHO05D007954 1.1e-75 288.5 437 49.2
VMungo1383G3322 Vigna mungo HOM05D006674 ORTHO05D007954 2.5e-75 287.3 572 36.0
Nitab4.5_0009806g0010 Nicotiana tabacum HOM05D006674 ORTHO05D007954 3.2e-75 287.0 563 46.2
Gohir.D07G078400 Gossypium hirsutum HOM05D006674 ORTHO05D007954 1.3e-73 281.6 575 48.9
arahy.Tifrunner.gnm1.ann1.V27PH4 Arachis hypogaea HOM05D006674 ORTHO05D007954 7.4e-72 275.8 516 47.9
MELO3C031718.2 Cucumis melo HOM05D006674 ORTHO05D007954 9.7e-72 275.4 441 56.7
EL10Ac2g03314 Beta vulgaris HOM05D006674 ORTHO05D007954 1.3e-71 275.0 505 45.0
COL.COLO4_13419 Corchorus olitorius HOM05D006674 ORTHO05D007954 1.8e-70 271.2 491 48.1
FAN26G0259 Fragaria x ananassa HOM05D006674 ORTHO05D007954 2.5e-67 260.8 526 43.9
Rhsim08G0019400 Rhododendron simsii HOM05D006674 ORTHO05D007954 7.2e-67 259.2 347 62.5
Lj4C259T11 Lonicera japonica HOM05D006674 ORTHO05D007954 6.1e-66 256.1 298 50.7
PGSC0003DMG400013236 Solanum tuberosum HOM05D006674 ORTHO05D007954 6.1e-66 256.1 480 46.0
PGR004G1202 Punica granatum HOM05D006674 ORTHO05D007954 1.4e-65 255.0 535 32.5
CDE06G1904 Ceratophyllum demersum HOM05D006674 ORTHO05D007954 4.3e-64 250.0 508 45.3
DCAR_016695 Daucus carota HOM05D006674 ORTHO05D007954 2.2e-63 247.7 320 64.7
Peaxi162Scf00562g00218 Petunia axillaris HOM05D006674 ORTHO05D007954 2.5e-59 234.2 351 54.1
CAN.G222.57 Capsicum annuum HOM05D006674 ORTHO05D007954 7.9e-58 229.2 273 46.9
unitig_27.g24984 Utricularia gibba HOM05D006674 ORTHO05D007954 1.4e-57 228.4 499 42.3
SGA_v2.0_scaffold108G30962 Striga asiatica HOM05D006674 ORTHO05D007954 8.8e-57 225.7 564 38.7
ClCG05G010650 Citrullus lanatus HOM05D006674 ORTHO05D007954 6.3e-55 219.5 285 46.3
AUR62042219 Chenopodium quinoa HOM05D006674 ORTHO05D007954 8.2e-55 219.2 460 34.1
Ca_17090_v3 Cicer arietinum L. HOM05D006674 ORTHO05D007954 3.1e-54 217.2 278 44.6
ATR0753G123 Amborella trichopoda HOM05D006674 ORTHO05D007954 3.3e-48 197.2 271 44.6
PSO478G0741 Papaver somniferum HOM05D006674 ORTHO05D007954 2.2e-47 194.5 280 68.9
PSO017G4728 Papaver somniferum HOM05D006674 ORTHO05D007954 3.7e-47 193.7 280 68.9
QL02p059277 Quercus lobata HOM05D006674 ORTHO05D007954 1.0e-36 159.1 182 50.0
ClCG05G010660 Citrullus lanatus HOM05D006674 ORTHO05D007954 3.0e-33 147.5 172 51.2
Os04g0278200 Oryza sativa ssp. japonica HOM05D006674 ORTHO05D007954 3.4e-32 144.1 250 58.0
ATR0753G105 Amborella trichopoda HOM05D006674 ORTHO05D007954 2.8e-31 141.0 132 56.8
CSS0022976 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 1.2e-29 135.6 100 69.0
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.6e-29 135.2 441 28.6
Cpa.g.sc340.5 Carica papaya HOM05D006674 ORTHO05D007954 1.0e-28 132.5 177 45.8
Zm00001eb221050 Zea mays HOM05D006674 ORTHO05D007954 2.8e-26 124.4 163 46.0
FAN26G0614 Fragaria x ananassa HOM05D006674 ORTHO05D007954 9.8e-24 115.9 120 55.8
HPP92_002281 Vanilla planifolia HOM05D006674 ORTHO05D007954 1.4e-22 112.1 398 45.5
Pp3c16_20720 Physcomitrium patens HOM05D006674 ORTHO05D007954 2.7e-21 107.8 180 38.3
Mapoly0177s0018 Marchantia polymorpha HOM05D006674 ORTHO05D007954 1.0e-20 105.9 115 47.8
CBR_g12189 Chara braunii HOM05D000019 ORTHO05D000002 5.6e-19 100.1 68 63.2
CAN.G691.5 Capsicum annuum HOM05D006674 ORTHO05D007954 1.2e-18 99.0 150 43.3
CAN.G222.56 Capsicum annuum HOM05D006674 ORTHO05D007954 6.1e-18 96.7 177 42.4
SalBow1G3838 Salvia bowleyana HOM05D006674 ORTHO05D007954 8.9e-17 92.8 169 36.1
arahy.Tifrunner.gnm1.ann1.UE2S4S Arachis hypogaea HOM05D006674 ORTHO05D007954 1.9e-14 85.1 123 42.3
Hma1.2p1_1214F.1_g267580 Hydrangea macrophylla HOM05D006674 ORTHO05D007954 7.0e-14 83.2 196 35.2
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.6e-13 82.0 70 51.4
arahy.Tifrunner.gnm1.ann1.EIPD4W Arachis hypogaea HOM05D006674 ORTHO05D007954 4.6e-13 80.5 103 40.8
Zm00001eb221070 Zea mays HOM05D006674 ORTHO05D007954 3.3e-11 74.3 211 26.5
MCO08G049 Micromonas commoda HOM05D006674 ORTHO05D007954 5.6e-11 73.6 68 50.0
QL02p059314 Quercus lobata HOM05D006674 ORTHO05D007954 1.6e-10 72.0 165 32.7
CAN.G222.66 Capsicum annuum HOM05D006674 ORTHO05D007954 2.8e-10 71.2 296 25.7
Hund13087 Selenicereus undatus HOM05D006674 ORTHO05D007954 7.5e-08 63.2 138 34.8
Glyma.08G281500 Glycine max HOM05D006674 ORTHO05D007954 2.2e-07 61.6 72 44.4
Peaxi162Scf00562g00214 Petunia axillaris HOM05D006674 ORTHO05D007954 4.9e-07 60.5 79 45.6
Oeu058058.1 Olea europaea HOM05D013212 ORTHO05D007954 6.4e-07 60.1 72 41.7
CSS0039398 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 4.1e-06 57.4 48 54.2
SEGI_15610 Sequoiadendron giganteum HOM05D006674 ORTHO05D007954 7.0e-06 56.6 75 40.0


User provided reference genes

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