Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 7.1e-106 387.5 228 100.0
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 7.1e-106 387.5 228 100.0
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 9.3e-98 360.5 230 95.2
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 1.6e-97 359.8 215 100.0
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 7.9e-97 357.5 232 93.5
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 4.8e-86 321.6 180 90.6
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 1.0e-83 313.9 230 86.1
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 3.2e-74 282.3 231 81.4
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 2.2e-70 269.6 235 75.3
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 4.7e-65 251.9 236 66.9
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 1.0e-64 250.8 226 64.2
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 3.0e-64 249.2 228 73.2
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 2.0e-44 183.3 194 55.2
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 1.2e-41 174.1 252 54.4
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 5.2e-40 168.7 226 56.6
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 6.8e-40 168.3 256 44.9
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 4.1e-37 159.1 194 51.0
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 4.1e-37 159.1 194 51.0
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 5.4e-37 158.7 266 50.0
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 7.0e-37 158.3 194 52.1
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 9.1e-37 157.9 234 56.4
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 1.2e-36 157.5 194 50.5
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 3.5e-36 156.0 257 54.9
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 4.5e-36 155.6 194 52.1
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 8.0e-33 144.8 237 43.0
AT1G66190 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 1.8e-32 143.7 259 48.3
THA.LOC104805631 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 1.3e-27 127.5 254 44.9
THA.LOC104822277 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 3.9e-27 125.9 232 47.0
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 4.0e-16 89.4 163 45.4
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 3.7e-14 82.8 127 43.3
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 3.5e-12 76.3 157 36.9
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 2.3e-11 73.6 189 37.0
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 2.3e-11 73.6 157 35.0
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 3.0e-11 73.2 189 35.4
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 3.0e-11 73.2 93 49.5
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 3.9e-11 72.8 169 34.9
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 3.9e-11 72.8 164 39.6
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 3.9e-11 72.8 164 40.2
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 3.9e-11 72.8 159 39.6
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 3.9e-11 72.8 160 41.2
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 5.1e-11 72.4 164 39.6
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 1.1e-10 71.2 154 40.3
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 1.9e-10 70.5 157 36.9
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 2.5e-10 70.1 173 37.0
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 3.3e-10 69.7 184 35.9
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 3.3e-10 69.7 93 45.2
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 3.3e-10 69.7 180 35.0
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 4.3e-10 69.3 171 32.7
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 4.3e-10 69.3 96 43.8
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 5.6e-10 68.9 101 42.6
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 7.3e-10 68.6 179 37.4
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 1.2e-09 67.8 93 47.3
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 1.2e-09 67.8 183 35.5
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 1.6e-09 67.4 163 37.4
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 2.8e-09 66.6 95 50.5
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 4.7e-09 65.9 92 44.6
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 6.2e-09 65.5 162 34.0
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 6.2e-09 65.5 96 42.7
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 6.2e-09 65.5 118 39.0
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 8.1e-09 65.1 93 46.2
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 1.1e-08 64.7 94 45.7
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 1.4e-08 64.3 137 31.4
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 1.4e-08 64.3 172 33.1
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.8e-08 63.9 163 35.6
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 2.3e-08 63.5 94 45.7
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 3.1e-08 63.2 163 35.0
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 4.0e-08 62.8 155 36.1
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 4.0e-08 62.8 132 35.6
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 4.0e-08 62.8 123 38.2
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 4.0e-08 62.8 142 37.3
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 8.9e-08 61.6 92 45.7
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 8.9e-08 61.6 162 33.3
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 8.9e-08 61.6 158 34.8
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.2e-07 61.2 157 33.8
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 1.2e-07 61.2 94 45.7
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 1.5e-07 60.8 165 31.5
arahy.Tifrunner.gnm1.ann1.I66ZQ3 Arachis hypogaea HOM05D009275 ORTHO05D009180 2.0e-07 60.5 103 39.8
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 3.4e-07 59.7 122 36.9
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 4.4e-07 59.3 171 31.0
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 4.4e-07 59.3 87 47.1
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 7.6e-07 58.5 99 40.4
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 1.3e-06 57.8 121 34.7
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 1.7e-06 57.4 92 39.1
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 1.7e-06 57.4 93 39.8
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 8.4e-06 55.1 93 38.7
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 8.4e-06 55.1 92 43.5
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 8.4e-06 55.1 120 33.3
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 8.4e-06 55.1 108 34.3


User provided reference genes

Program Settings