Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1780.4 864 100.0
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1777.3 864 99.7
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1775.8 864 99.5
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1719.1 866 97.0
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1712.6 866 96.7
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1687.5 864 94.6
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1611.7 864 90.3
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1589.3 868 87.8
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1506.9 863 84.2
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1501.5 863 83.7
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1497.6 862 83.8
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1438.3 861 81.2
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1437.6 862 79.2
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1298.5 864 71.9
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1282.7 867 70.6
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1279.2 863 70.1
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1276.2 867 70.5
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1273.5 864 70.6
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1270.0 863 70.3
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1267.3 870 69.3
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1266.5 864 70.0
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1262.3 864 69.8
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1256.9 864 69.6
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1248.8 864 68.3
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1247.3 864 68.3
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1245.3 867 68.3
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1245.3 867 68.9
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1239.6 876 67.5
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1236.5 869 67.8
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1235.3 862 68.3
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 0.0e+00 1234.2 690 85.7
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1233.0 868 67.7
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1230.7 865 68.0
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1229.9 866 67.8
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1229.5 871 67.6
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1227.2 866 67.7
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1227.2 864 68.2
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1226.8 866 67.2
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1226.5 862 67.7
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1226.1 865 67.5
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1225.7 869 67.3
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1224.5 864 68.2
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 863 68.5
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 865 67.7
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1222.6 869 67.0
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1221.5 870 67.5
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1219.5 865 66.9
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1218.4 865 68.1
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1214.5 876 67.1
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1214.1 865 67.2
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1213.4 860 67.6
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1213.0 864 67.2
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1212.2 866 67.4
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1208.7 871 66.7
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1206.8 862 66.5
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1204.5 872 65.9
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1201.8 858 66.6
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1201.4 870 66.6
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1199.9 862 67.4
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1198.7 869 66.3
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1198.3 864 67.0
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1198.0 865 66.7
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1197.6 865 66.5
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1197.2 869 67.2
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1195.6 865 66.5
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1194.5 864 66.6
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1192.9 865 66.2
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1192.6 887 64.9
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1189.9 861 66.2
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1187.9 878 64.5
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1187.9 857 65.6
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1187.2 864 66.3
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1184.5 868 65.8
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1182.9 863 66.2
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1182.5 864 66.4
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1181.4 862 66.0
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1178.3 874 65.0
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1177.5 882 64.4
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1174.1 868 64.9
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1172.9 867 65.4
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1168.3 870 64.5
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1167.5 866 64.8
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1164.8 862 65.0
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1162.5 874 63.5
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1159.4 859 64.7
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1158.3 868 64.5
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1152.5 866 63.2
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1129.4 863 64.2
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1117.8 867 62.3
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1102.8 829 64.9
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1081.6 841 63.6
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 1.8e-306 1055.8 749 68.5
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 1.3e-298 1029.6 646 74.1
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.8e-298 1029.2 861 57.4
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 5.1e-298 1027.7 862 60.2
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 4.8e-296 1021.1 691 69.3
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 3.4e-294 1015.0 859 57.9
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 5.0e-285 984.6 861 54.8
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 1.8e-279 966.1 858 55.6
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.6e-278 963.0 864 53.9
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 7.0e-271 937.6 869 52.9
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 7.9e-206 721.5 778 47.9
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.2e-157 559.3 388 68.3
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 1.1e-151 541.6 475 56.4
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 2.0e-137 494.2 460 55.2
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 2.3e-117 427.6 361 59.6
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 7.6e-84 316.2 312 55.1
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 3.7e-62 244.2 168 68.5
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 3.1e-61 241.1 204 57.4
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 5.7e-47 193.7 161 59.6
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 1.2e-39 169.5 198 47.5
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.3e-38 166.0 169 49.1
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.8e-32 145.6 103 64.1
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 7.5e-31 140.2 149 47.7
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 9.5e-26 123.2 85 68.2
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 8.0e-25 120.2 118 52.5
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 3.4e-23 114.8 69 72.5
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 4.9e-22 110.9 86 64.0
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 1.2e-20 106.3 90 60.0
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.1e-18 99.8 86 55.8
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 8.9e-16 90.1 107 47.7
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.9e-14 85.1 321 25.5
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.4e-13 82.8 319 25.4
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 9.2e-13 80.1 274 25.2
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.2e-12 79.7 298 24.8
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.0e-11 76.6 311 25.1
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 3.0e-11 75.1 251 24.3
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 8.6e-11 73.6 304 25.7
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 7.3e-10 70.5 338 21.3
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.8e-09 68.6 335 23.3
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 2.8e-09 68.6 65 53.8
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 6.2e-09 67.4 333 23.4
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 8.0e-09 67.0 303 25.7
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.4e-08 66.2 308 22.7
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.3e-08 65.5 298 23.5
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.1e-08 65.1 329 20.1
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 3.1e-08 65.1 98 39.8
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 4.0e-08 64.7 288 24.3
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 8.9e-08 63.5 305 24.9
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 1.3e-06 59.7 296 25.0
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.7e-06 59.3 32 78.1
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 3.7e-06 58.2 81 38.3
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 3.7e-06 58.2 167 25.7
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 3.7e-06 58.2 220 24.5
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 8.3e-06 57.0 200 26.0


User provided reference genes

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