Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 3.3e-33 144.4 72 100.0
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 3.3e-33 144.4 72 100.0
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 9.6e-33 142.9 72 98.6
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 9.6e-33 142.9 72 98.6
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-24 115.9 55 100.0
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-24 115.9 55 100.0
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 3.7e-24 114.4 55 98.2
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 3.8e-21 104.4 74 74.3
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 5.5e-20 100.5 80 67.5
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 9.3e-20 99.8 55 83.6
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.2e-19 99.4 55 85.5
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 2.7e-19 98.2 55 81.8
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 7.9e-19 96.7 54 83.3
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 8.7e-18 93.2 55 74.5
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 1.9e-17 92.0 54 77.8
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 1.9e-17 92.0 55 76.4
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 1.9e-17 92.0 55 74.5
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.9e-17 92.0 55 74.5
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 2.5e-17 91.7 55 72.7
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 3.3e-17 91.3 51 84.3
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 4.3e-17 90.9 62 71.0
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 4.3e-17 90.9 55 74.5
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 7.4e-17 90.1 58 69.0
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 7.4e-17 90.1 55 74.5
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.3e-16 89.4 55 74.5
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.3e-16 89.4 51 78.4
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.8e-16 88.2 55 76.4
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 2.8e-16 88.2 55 69.1
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 2.8e-16 88.2 50 80.0
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 3.7e-16 87.8 50 80.0
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 3.7e-16 87.8 51 78.4
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 3.7e-16 87.8 51 74.5
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 3.7e-16 87.8 54 70.4
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 4.8e-16 87.4 51 80.4
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 4.8e-16 87.4 55 72.7
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 4.8e-16 87.4 55 69.1
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 6.3e-16 87.0 55 74.5
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 8.2e-16 86.7 55 72.7
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 1.1e-15 86.3 61 68.9
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 1.1e-15 86.3 55 72.7
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 1.1e-15 86.3 55 72.7
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 1.1e-15 86.3 55 70.9
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.1e-15 86.3 49 79.6
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 1.1e-15 86.3 51 76.5
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 1.1e-15 86.3 50 78.0
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 1.4e-15 85.9 54 74.1
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.4e-15 85.9 55 72.7
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 1.4e-15 85.9 51 74.5
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.4e-15 85.9 55 67.3
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 1.4e-15 85.9 55 67.3
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 1.8e-15 85.5 49 75.5
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.8e-15 85.5 49 75.5
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 1.8e-15 85.5 52 73.1
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.8e-15 85.5 55 72.7
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.4e-15 85.1 50 82.0
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 3.1e-15 84.7 49 77.6
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 4.1e-15 84.3 55 69.1
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 5.3e-15 84.0 50 76.0
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 5.3e-15 84.0 55 74.5
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 5.3e-15 84.0 53 73.6
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 5.3e-15 84.0 51 74.5
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 5.3e-15 84.0 55 69.1
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 6.9e-15 83.6 57 75.4
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 6.9e-15 83.6 55 72.7
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 6.9e-15 83.6 50 76.0
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 9.0e-15 83.2 51 70.6
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 9.0e-15 83.2 49 77.6
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 9.0e-15 83.2 55 69.1
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 9.0e-15 83.2 55 69.1
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 9.0e-15 83.2 55 69.1
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 9.0e-15 83.2 50 76.0
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 1.2e-14 82.8 68 57.4
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 1.2e-14 82.8 51 70.6
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 1.2e-14 82.8 51 70.6
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 1.5e-14 82.4 50 78.0
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.5e-14 82.4 50 78.0
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 1.5e-14 82.4 55 69.1
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.5e-14 82.4 55 70.9
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 2.0e-14 82.0 55 69.1
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 2.0e-14 82.0 55 67.3
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 2.6e-14 81.6 58 69.0
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 2.6e-14 81.6 50 72.0
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 2.6e-14 81.6 54 66.7
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 2.6e-14 81.6 55 65.5
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 3.4e-14 81.3 51 74.5
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 3.4e-14 81.3 55 67.3
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 4.5e-14 80.9 49 75.5
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 5.9e-14 80.5 49 71.4
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 5.9e-14 80.5 55 69.1
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 5.9e-14 80.5 51 72.5
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 7.7e-14 80.1 47 76.6
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 7.7e-14 80.1 51 70.6
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 7.7e-14 80.1 55 67.3
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.0e-13 79.7 54 66.7
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.0e-13 79.7 54 66.7
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.3e-13 79.3 54 66.7
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.3e-13 79.3 54 66.7
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 1.7e-13 79.0 53 64.2
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.7e-13 79.0 51 70.6
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.7e-13 79.0 51 70.6
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 2.2e-13 78.6 55 61.8
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 2.2e-13 78.6 58 67.2
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 2.2e-13 78.6 58 67.2
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 2.2e-13 78.6 54 64.8
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 2.2e-13 78.6 54 64.8
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 2.9e-13 78.2 48 72.9
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 2.9e-13 78.2 55 65.5
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 3.8e-13 77.8 83 53.0
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 3.8e-13 77.8 55 63.6
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 6.5e-13 77.0 60 63.3
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 6.5e-13 77.0 45 77.8
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 8.5e-13 76.6 58 60.3
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.1e-12 76.3 58 65.5
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 1.1e-12 76.3 54 64.8
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 1.1e-12 76.3 62 61.3
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 1.1e-12 76.3 55 63.6
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.9e-12 75.5 50 68.0
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.9e-12 75.5 55 65.5
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 2.5e-12 75.1 50 66.0
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 2.5e-12 75.1 51 68.6
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.5e-12 75.1 50 68.0
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 2.5e-12 75.1 50 68.0
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 2.5e-12 75.1 53 62.3
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 2.5e-12 75.1 55 63.6
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.5e-12 75.1 46 76.1
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 7.2e-12 73.6 60 61.7
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 7.2e-12 73.6 57 66.7
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 9.4e-12 73.2 50 64.0
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 9.4e-12 73.2 64 53.1
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 1.2e-11 72.8 71 53.5
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.6e-11 72.4 77 50.6
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 2.1e-11 72.0 51 60.8
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 7.9e-11 70.1 49 67.3
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 1.4e-10 69.3 51 58.8
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 3.9e-10 67.8 64 48.4
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 5.1e-10 67.4 58 58.6
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 6.9e-07 57.0 46 54.3
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 6.9e-07 57.0 47 51.1
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.5e-06 55.8 45 57.8
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.5e-06 55.8 45 57.8
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.0e-06 55.5 49 51.0


User provided reference genes

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