Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 3.1e-257 891.7 611 100.0
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 2.4e-249 865.5 626 94.9
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 8.0e-237 823.9 619 93.4
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 1.5e-203 713.4 616 72.9
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.9e-182 643.3 621 81.5
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.5e-182 642.9 667 71.8
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.2e-168 597.4 666 74.2
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.3e-167 594.0 665 70.1
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.6e-165 587.0 668 68.7
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.9e-142 510.4 664 55.7
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.8e-141 506.5 706 66.1
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 8.5e-138 495.0 666 64.7
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 1.3e-117 427.9 699 54.8
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.5e-105 387.9 692 58.5
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 3.4e-62 243.8 700 36.4
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 8.4e-61 239.2 724 38.3
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 4.6e-59 233.4 558 44.8
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.7e-58 231.5 698 38.5
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.1e-57 228.8 574 43.2
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.9e-57 228.0 667 39.6
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.9e-57 228.0 674 38.7
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 3.3e-57 227.3 754 37.0
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 7.3e-57 226.1 434 42.2
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 7.3e-57 226.1 703 40.7
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 9.6e-57 225.7 552 44.4
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.1e-55 222.2 665 42.1
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.8e-55 221.5 660 39.1
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 3.1e-55 220.7 667 34.3
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 5.3e-55 219.9 355 50.4
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.6e-54 217.6 212 62.7
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 2.6e-54 217.6 753 39.0
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.3e-53 215.3 558 45.2
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.9e-53 214.2 723 39.8
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.1e-52 212.2 662 34.6
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 7.1e-52 209.5 681 40.2
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 7.1e-52 209.5 709 40.6
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 1.2e-51 208.8 728 40.2
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 1.6e-51 208.4 696 41.8
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.1e-51 208.0 661 39.3
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 6.0e-51 206.5 715 38.2
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.0e-50 205.7 720 39.3
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.3e-50 205.3 569 41.3
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.3e-50 205.3 656 40.5
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.7e-50 204.9 701 38.9
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 2.3e-50 204.5 727 40.2
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 3.0e-50 204.1 736 43.8
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 6.6e-50 203.0 608 43.4
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 8.7e-50 202.6 698 43.3
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 8.7e-50 202.6 393 42.7
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 1.9e-49 201.4 687 43.4
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 2.5e-49 201.1 692 39.6
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 7.3e-49 199.5 567 37.9
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 9.6e-49 199.1 700 38.4
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 2.8e-48 197.6 712 39.2
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.8e-48 196.8 678 36.9
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 8.1e-48 196.1 678 37.0
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 8.1e-48 196.1 678 37.0
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.4e-47 195.3 686 35.4
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.8e-47 194.9 643 36.5
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 1.8e-47 194.9 672 37.2
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 2.4e-47 194.5 660 45.3
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 6.9e-47 193.0 697 38.0
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 1.5e-46 191.8 685 40.1
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 7.6e-46 189.5 617 38.9
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 7.6e-46 189.5 708 43.9
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 2.2e-45 188.0 643 36.2
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 2.9e-45 187.6 657 39.9
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 3.8e-45 187.2 687 40.9
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 4.9e-45 186.8 669 38.6
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 6.4e-45 186.4 683 37.8
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.1e-44 185.7 752 39.4
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 1.1e-44 185.7 612 35.8
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 7.1e-44 183.0 689 35.1
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.2e-43 182.2 639 34.7
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 6.0e-43 179.9 694 40.6
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.3e-42 178.7 659 34.9
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 1.8e-42 178.3 599 37.7
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.8e-42 178.3 646 37.6
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 2.3e-42 177.9 701 41.2
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.9e-42 177.2 649 38.2
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 8.7e-42 176.0 674 39.6
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 1.5e-41 175.3 706 33.6
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.5e-41 174.5 668 33.4
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.3e-41 174.1 677 34.6
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 7.4e-41 172.9 416 38.7
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.4e-41 172.9 655 37.4
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 6.2e-40 169.9 673 40.9
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.8e-39 168.3 596 43.6
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.8e-39 168.3 691 34.0
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 3.1e-39 167.5 673 32.5
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 3.4e-38 164.1 638 34.5
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 5.8e-38 163.3 626 31.9
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 7.6e-38 162.9 643 39.7
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.7e-37 161.8 654 36.5
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 2.2e-37 161.4 411 39.2
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 4.9e-37 160.2 704 32.0
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 3.2e-36 157.5 688 33.3
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.5e-35 154.1 448 34.8
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 4.6e-35 153.7 620 36.1
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.0e-34 152.5 693 36.4
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.3e-34 152.1 701 41.1
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 1.3e-34 152.1 627 33.7
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 2.3e-34 151.4 700 31.9
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 2.3e-34 151.4 624 31.6
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 5.1e-34 150.2 627 31.3
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 8.7e-34 149.4 572 33.4
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 1.1e-33 149.1 702 35.5
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.5e-33 148.7 557 35.9
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.5e-33 148.7 557 35.9
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 5.7e-33 146.7 552 35.1
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 5.7e-33 146.7 567 35.8
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.3e-32 145.6 706 35.4
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.7e-32 144.1 611 37.3
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 8.2e-32 142.9 301 39.9
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.1e-31 142.5 544 37.1
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 3.1e-31 141.0 717 39.7
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.2e-30 139.0 605 38.0
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.2e-30 139.0 548 42.5
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 7.6e-30 136.3 741 38.6
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 5.5e-28 130.2 716 33.0
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.0e-26 125.9 229 42.8
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 3.9e-26 124.0 624 34.0
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 5.1e-26 123.6 556 38.1
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 1.5e-25 122.1 625 30.1
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 9.7e-25 119.4 633 31.9
Aa31LG1G18520 Aethionema arabicum HOM05D003795 ORTHO05D026452 1.6e-24 118.6 118 66.1
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.6e-24 118.6 633 28.6
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 4.8e-24 117.1 538 30.9
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 4.8e-24 117.1 626 28.1
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 6.3e-24 116.7 269 40.9
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.6e-22 111.3 375 36.0
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 5.9e-22 110.2 306 34.6
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.3e-21 109.0 619 27.6
BraA06t25267Z Brassica rapa HOM05D003795 ORTHO05D026452 3.8e-21 107.5 74 86.5
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 6.5e-21 106.7 248 36.7
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.1e-20 105.9 749 34.4
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.4e-20 105.5 635 27.6
A06p21800 Brassica napus HOM05D003795 ORTHO05D026452 3.2e-20 104.4 76 82.9
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 5.5e-20 103.6 528 27.3
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 1.2e-19 102.4 606 27.6
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 2.7e-19 101.3 426 45.1
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 2.7e-19 101.3 622 29.1
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 5.1e-18 97.1 358 30.4
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 8.8e-18 96.3 275 33.1
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.0e-17 95.1 616 28.2
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 2.5e-17 94.7 617 28.8
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 7.4e-17 93.2 412 45.1
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.3e-16 92.4 61 78.7
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 4.1e-15 87.4 640 28.8
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.4e-14 84.3 695 29.1
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 4.5e-14 84.0 740 25.8
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 2.9e-13 81.3 95 51.6
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 6.5e-13 80.1 683 28.1
C03p77490 Brassica napus HOM05D011073 ORTHO05D013800 1.1e-12 79.3 58 81.0
BraA02t06724Z Brassica rapa HOM05D011073 ORTHO05D013800 1.1e-12 79.3 58 81.0
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.4e-12 79.0 325 32.9
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 1.9e-12 78.6 78 62.8
BcaB04g20778 Brassica carinata HOM05D011073 ORTHO05D013800 4.2e-12 77.4 58 79.3
C03p10570 Brassica napus HOM05D011073 ORTHO05D013800 4.2e-12 77.4 58 79.3
BolC4t22963H Brassica oleracea HOM05D011073 ORTHO05D013800 4.2e-12 77.4 58 79.3
BolC9t54509H Brassica oleracea HOM05D011073 ORTHO05D013800 4.2e-12 77.4 58 79.3
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 9.4e-12 76.3 416 41.6
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.7e-11 74.7 174 35.6
A05p19800 Brassica napus HOM05D011073 ORTHO05D013800 7.9e-11 73.2 58 75.9
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 7.9e-11 73.2 320 31.9
BcaC04g22717 Brassica carinata HOM05D011073 ORTHO05D013800 1.4e-10 72.4 52 78.8
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.8e-10 72.0 170 44.7
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 3.9e-10 70.9 630 31.1
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 3.9e-10 70.9 108 45.4
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.5e-09 68.9 75 58.7
BraA05t20886Z Brassica rapa HOM05D003089 ORTHO05D001766 2.2e-08 65.1 181 52.5
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 3.7e-08 64.3 262 31.3
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 8.2e-08 63.2 156 35.9
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.4e-07 62.4 139 38.1
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 1.4e-07 62.4 100 48.0
A09p23250 Brassica napus HOM05D003795 ORTHO05D026452 5.9e-06 57.0 36 88.9
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 5.9e-06 57.0 59 59.3
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 7.7e-06 56.6 545 34.1


User provided reference genes

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