Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p43650 Brassica napus HOM05D001872 ORTHO05D001859 2.9e-34 147.9 70 100.0
BolC4t25946H Brassica oleracea HOM05D001872 ORTHO05D001859 6.3e-29 130.2 62 100.0
AL7G45240 Arabidopsis lyrata HOM05D001872 ORTHO05D001859 5.9e-11 70.5 46 78.3
Nn2g10511 Nelumbo nucifera HOM05D001872 ORTHO05D001859 5.9e-11 70.5 39 82.1
vmacro07140 Vaccinium macrocarpon HOM05D001872 ORTHO05D001859 3.8e-10 67.8 34 91.2
PGSC0003DMG400023416 Solanum tuberosum HOM05D001872 ORTHO05D001859 5.0e-10 67.4 36 86.1
THA.LOC104827305 Tarenaya hassleriana HOM05D001872 ORTHO05D001859 5.0e-10 67.4 35 91.4
BcaB03g12910 Brassica carinata HOM05D001872 ORTHO05D001859 6.5e-10 67.0 35 88.6
A08p29770 Brassica napus HOM05D001872 ORTHO05D001859 6.5e-10 67.0 35 88.6
C08p19510 Brassica napus HOM05D001872 ORTHO05D001859 6.5e-10 67.0 35 88.6
BolC8t49574H Brassica oleracea HOM05D001872 ORTHO05D001859 6.5e-10 67.0 35 88.6
Hma1.2p1_0402F.1_g145080 Hydrangea macrophylla HOM05D001872 ORTHO05D001859 6.5e-10 67.0 36 86.1
Peaxi162Scf00015g02219 Petunia axillaris HOM05D001872 ORTHO05D001859 6.5e-10 67.0 58 63.8
BcaB07g31978 Brassica carinata HOM05D001872 ORTHO05D001859 8.5e-10 66.6 35 88.6
CARHR020120 Cardamine hirsuta HOM05D001872 ORTHO05D001859 8.5e-10 66.6 39 79.5
HanXRQChr12g0371001 Helianthus annuus HOM05D001872 ORTHO05D001859 8.5e-10 66.6 33 87.9
EL10Ac2g03463 Beta vulgaris HOM05D001872 ORTHO05D001859 1.1e-09 66.2 35 88.6
ECA233G1507 Erigeron canadensis HOM05D001872 ORTHO05D001859 1.1e-09 66.2 70 54.3
Solyc05g054760.4 Solanum lycopersicum HOM05D001872 ORTHO05D001859 1.1e-09 66.2 36 86.1
Sopen05g033230 Solanum pennellii HOM05D001872 ORTHO05D001859 1.1e-09 66.2 36 86.1
AUR62022530 Chenopodium quinoa HOM05D001872 ORTHO05D001859 1.5e-09 65.9 35 85.7
Lsat_1_v5_gn_8_18380 Lactuca sativa HOM05D001872 ORTHO05D001859 1.5e-09 65.9 36 83.3
Sp1g17420 Schrenkiella parvula HOM05D001872 ORTHO05D001859 1.5e-09 65.9 35 85.7
BcaB03g14439 Brassica carinata HOM05D001872 ORTHO05D001859 1.9e-09 65.5 33 90.9
Haze_16990 Corylus avellana HOM05D001872 ORTHO05D001859 1.9e-09 65.5 38 78.9
Aa31LG4G5510 Aethionema arabicum HOM05D001872 ORTHO05D001859 2.5e-09 65.1 35 82.9
A06p15730 Brassica napus HOM05D001872 ORTHO05D001859 2.5e-09 65.1 35 85.7
C05p18050 Brassica napus HOM05D001872 ORTHO05D001859 2.5e-09 65.1 35 85.7
BolC5t30513H Brassica oleracea HOM05D001872 ORTHO05D001859 2.5e-09 65.1 35 85.7
BraA06t24683Z Brassica rapa HOM05D001872 ORTHO05D001859 2.5e-09 65.1 35 85.7
HanXRQChr08g0220001 Helianthus annuus HOM05D001872 ORTHO05D001859 2.5e-09 65.1 36 80.6
CSS0046087 Camellia sinensis var. sinensis HOM05D001872 ORTHO05D001859 3.2e-09 64.7 35 80.0
Thhalv10008761m.g Eutrema salsugineum HOM05D001872 ORTHO05D001859 3.2e-09 64.7 35 85.7
TAR636G1680 Trochodendron aralioides HOM05D001872 ORTHO05D001859 3.2e-09 64.7 35 82.9
AT1G19570 Arabidopsis thaliana HOM05D001872 ORTHO05D001859 4.2e-09 64.3 36 80.6
CAN.G1339.4 Capsicum annuum HOM05D001872 ORTHO05D001859 4.2e-09 64.3 33 84.8
COL.COLO4_10917 Corchorus olitorius HOM05D001872 ORTHO05D001859 4.2e-09 64.3 35 80.0
DCAR_027680 Daucus carota HOM05D001872 ORTHO05D001859 4.2e-09 64.3 33 87.9
Dinv31405 Davidia involucrata HOM05D001872 ORTHO05D001859 4.2e-09 64.3 33 84.8
Duzib106G0266 Durio zibethinus HOM05D001872 ORTHO05D001859 4.2e-09 64.3 36 77.8
Thhalv10019864m.g Eutrema salsugineum HOM05D001872 ORTHO05D001859 4.2e-09 64.3 43 74.4
Oeu050657.1 Olea europaea HOM05D001872 ORTHO05D001859 4.2e-09 64.3 45 66.7
Os05g0116100 Oryza sativa ssp. japonica HOM05D001872 ORTHO05D001859 4.2e-09 64.3 33 87.9
Hund19998 Selenicereus undatus HOM05D001872 ORTHO05D001859 4.2e-09 64.3 33 87.9
TWI38G2404 Tripterygium wilfordii HOM05D001872 ORTHO05D001859 4.2e-09 64.3 35 80.0
AL1G32300 Arabidopsis lyrata HOM05D001872 ORTHO05D001859 5.5e-09 63.9 36 80.6
BcaB05g24899 Brassica carinata HOM05D001872 ORTHO05D001859 5.5e-09 63.9 33 87.9
Migut.F01517 Erythranthe guttata HOM05D001872 ORTHO05D001859 5.5e-09 63.9 33 81.8
Gohir.D10G219500 Gossypium hirsutum HOM05D001872 ORTHO05D001859 5.5e-09 63.9 33 81.8
Gorai.011G246200 Gossypium raimondii HOM05D001872 ORTHO05D001859 5.5e-09 63.9 33 81.8
Manes.10G037200 Manihot esculenta HOM05D001872 ORTHO05D001859 5.5e-09 63.9 36 77.8
Sed0018854 Sechium edule HOM05D001872 ORTHO05D001859 5.5e-09 63.9 33 90.9
Ah.16g107630 Amaranthus hybridus HOM05D001872 ORTHO05D001859 7.2e-09 63.5 35 85.7
Ciclev10032931m.g Citrus clementina HOM05D001872 ORTHO05D001859 7.2e-09 63.5 33 81.8
AL2G35200 Arabidopsis lyrata HOM05D001872 ORTHO05D001859 9.4e-09 63.2 35 80.0
AT1G75270 Arabidopsis thaliana HOM05D001872 ORTHO05D001859 9.4e-09 63.2 35 80.0
Carub.0002s2209 Capsella rubella HOM05D001872 ORTHO05D001859 9.4e-09 63.2 35 80.0
Eucgr.G02764 Eucalyptus grandis HOM05D001872 ORTHO05D001859 9.4e-09 63.2 33 78.8
PSO339G0199 Papaver somniferum HOM05D001872 ORTHO05D001859 9.4e-09 63.2 33 81.8
PSO384G3366 Papaver somniferum HOM05D001872 ORTHO05D001859 9.4e-09 63.2 33 81.8
PGR142G2200 Punica granatum HOM05D001872 ORTHO05D001859 9.4e-09 63.2 33 84.8
SalBow6G6064 Salvia bowleyana HOM05D001872 ORTHO05D001859 9.4e-09 63.2 33 78.8
Sp5g30440 Schrenkiella parvula HOM05D001872 ORTHO05D001859 9.4e-09 63.2 35 80.0
Thecc.10G058100 Theobroma cacao HOM05D001872 ORTHO05D001859 9.4e-09 63.2 33 81.8
CARHR068610 Cardamine hirsuta HOM05D001872 ORTHO05D001859 1.2e-08 62.8 35 80.0
Lsat_1_v5_gn_8_18400 Lactuca sativa HOM05D001872 ORTHO05D001859 1.2e-08 62.8 39 74.4
PSO339G4693 Papaver somniferum HOM05D001872 ORTHO05D001859 1.2e-08 62.8 35 82.9
BcaC03g15558 Brassica carinata HOM05D001872 ORTHO05D001859 1.6e-08 62.4 33 84.8
A02p19840 Brassica napus HOM05D001872 ORTHO05D001859 1.6e-08 62.4 33 84.8
BraA02t07017Z Brassica rapa HOM05D001872 ORTHO05D001859 1.6e-08 62.4 33 84.8
Aa31LG7G4190 Aethionema arabicum HOM05D001872 ORTHO05D001859 2.1e-08 62.0 33 84.8
CANSAT25G2271 Cannabis sativa HOM05D001872 ORTHO05D001859 2.1e-08 62.0 33 87.9
Duzib114G0234 Durio zibethinus HOM05D001872 ORTHO05D001859 2.1e-08 62.0 36 77.8
Duzib128G0283 Durio zibethinus HOM05D001872 ORTHO05D001859 2.1e-08 62.0 33 81.8
Gohir.A05G351200 Gossypium hirsutum HOM05D001872 ORTHO05D001859 2.1e-08 62.0 36 75.0
Gohir.D04G061500 Gossypium hirsutum HOM05D001872 ORTHO05D001859 2.1e-08 62.0 36 75.0
Gorai.012G068600 Gossypium raimondii HOM05D001872 ORTHO05D001859 2.1e-08 62.0 36 75.0
Lj1A931T51 Lonicera japonica HOM05D001872 ORTHO05D001859 2.1e-08 62.0 35 77.1
Nn2g12864 Nelumbo nucifera HOM05D001872 ORTHO05D001859 2.1e-08 62.0 35 80.0
Nitab4.5_0004055g0020 Nicotiana tabacum HOM05D001872 ORTHO05D001859 2.1e-08 62.0 33 81.8
TWI15G1031 Tripterygium wilfordii HOM05D001872 ORTHO05D001859 2.1e-08 62.0 36 77.8
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 2.1e-08 62.0 35 82.9
MSTRG.8236 Avicennia marina HOM05D001872 ORTHO05D001859 2.7e-08 61.6 33 81.8
Psat6g237000 Pisum sativum HOM05D001872 ORTHO05D001859 2.7e-08 61.6 39 69.2
GSVIVG01005966001 Vitis vinifera HOM05D001872 ORTHO05D001859 2.7e-08 61.6 33 81.8
Zm00001eb266260 Zea mays HOM05D001872 ORTHO05D001859 2.7e-08 61.6 31 87.1
Zm00001eb355550 Zea mays HOM05D001872 ORTHO05D001859 2.7e-08 61.6 31 90.3
CSS0023136 Camellia sinensis var. sinensis HOM05D001872 ORTHO05D001859 3.6e-08 61.2 35 80.0
CiPaw.01G281700 Carya illinoinensis HOM05D001872 ORTHO05D001859 3.6e-08 61.2 35 77.1
PSO384G1978 Papaver somniferum HOM05D001872 ORTHO05D001859 3.6e-08 61.2 35 80.0
TAR369G0004 Trochodendron aralioides HOM05D001872 ORTHO05D001859 3.6e-08 61.2 35 74.3
Zm00001eb355540 Zea mays HOM05D001872 ORTHO05D001859 3.6e-08 61.2 31 87.1
ATR0033G034 Amborella trichopoda HOM05D001872 ORTHO05D001859 4.7e-08 60.8 32 84.4
C02p32460 Brassica napus HOM05D001872 ORTHO05D001859 4.7e-08 60.8 33 81.8
Cpa.g.c48029 Carica papaya HOM05D001872 ORTHO05D001859 4.7e-08 60.8 33 81.8
Cpa.g.sc1.329 Carica papaya HOM05D001872 ORTHO05D001859 4.7e-08 60.8 33 81.8
Oeu011131.4 Olea europaea HOM05D001872 ORTHO05D001859 4.7e-08 60.8 33 78.8
Actinidia29207 Actinidia chinensis HOM05D001872 ORTHO05D001859 6.1e-08 60.5 35 77.1
Gohir.A10G211200 Gossypium hirsutum HOM05D001872 ORTHO05D001859 6.1e-08 60.5 33 78.8
Lj8A90G50 Lonicera japonica HOM05D001872 ORTHO05D001859 6.1e-08 60.5 33 78.8
Sabra08G0035400 Salix brachista HOM05D001872 ORTHO05D001859 6.1e-08 60.5 35 71.4
unitig_749.g14013 Utricularia gibba HOM05D000269 ORTHO05D005780 6.1e-08 60.5 35 77.1
ClCG02G013470 Citrullus lanatus HOM05D001872 ORTHO05D001859 8.0e-08 60.1 34 82.4
Glyma.10G291100 Glycine max HOM05D001872 ORTHO05D001859 8.0e-08 60.1 35 80.0
Glyma.20G240300 Glycine max HOM05D001872 ORTHO05D001859 8.0e-08 60.1 35 80.0
Sc07g0006680 Simmondsia chinensis HOM05D001872 ORTHO05D001859 8.0e-08 60.1 33 78.8
Sc07g0006690 Simmondsia chinensis HOM05D001872 ORTHO05D001859 8.0e-08 60.1 33 78.8
Aqoxy4G03053 Aquilegia oxysepala HOM05D001872 ORTHO05D001859 1.0e-07 59.7 33 78.8
CDE04G0456 Ceratophyllum demersum HOM05D001872 ORTHO05D001859 1.0e-07 59.7 32 84.4
COL.COLO4_10916 Corchorus olitorius HOM05D001872 ORTHO05D001859 1.0e-07 59.7 33 81.8
Phvul.007G009800 Phaseolus vulgaris HOM05D001872 ORTHO05D001859 1.0e-07 59.7 35 80.0
Prupe.2G227100 Prunus persica HOM05D001872 ORTHO05D001859 1.0e-07 59.7 33 81.8
Sed0013664 Sechium edule HOM05D001872 ORTHO05D001859 1.0e-07 59.7 35 77.1
Hund22418 Selenicereus undatus HOM05D001872 ORTHO05D001859 1.0e-07 59.7 33 81.8
arahy.Tifrunner.gnm1.ann1.R65TT7 Arachis hypogaea HOM05D001872 ORTHO05D001859 1.4e-07 59.3 33 81.8
Carub.0001s1912 Capsella rubella HOM05D001872 ORTHO05D001859 1.4e-07 59.3 36 72.2
PSO339G1027 Papaver somniferum HOM05D001872 ORTHO05D001859 1.4e-07 59.3 36 69.4
Potri.008G049300 Populus trichocarpa HOM05D001872 ORTHO05D001859 1.4e-07 59.3 35 71.4
Zm00001eb354400 Zea mays HOM05D052767 ORTHO05D001859 1.4e-07 59.3 31 83.9
Atru.chr4.2902 Acer truncatum HOM05D001872 ORTHO05D001859 1.8e-07 58.9 35 71.4
BcaB06g27021 Brassica carinata HOM05D001872 ORTHO05D001859 1.8e-07 58.9 35 82.9
Eucgr.G02889 Eucalyptus grandis HOM05D001872 ORTHO05D001859 1.8e-07 58.9 55 60.0
Lj5g0001191 Lotus japonicus HOM05D001872 ORTHO05D001859 1.8e-07 58.9 42 64.3
Medtr1g115500 Medicago truncatula HOM05D001872 ORTHO05D001859 1.8e-07 58.9 35 77.1
Sabra10G0163600 Salix brachista HOM05D001872 ORTHO05D001859 1.8e-07 58.9 35 77.1
Cfa001543 Carpinus fangiana HOM05D001872 ORTHO05D001859 2.3e-07 58.5 33 81.8
arahy.Tifrunner.gnm1.ann1.PCJ45Z Arachis hypogaea HOM05D001872 ORTHO05D001859 3.0e-07 58.2 33 81.8
CANSAT56G2969 Cannabis sativa HOM05D001872 ORTHO05D001859 3.0e-07 58.2 35 74.3
CANSAT56G3707 Cannabis sativa HOM05D001872 ORTHO05D001859 3.0e-07 58.2 35 74.3
CANSAT64G0877 Cannabis sativa HOM05D001872 ORTHO05D001859 3.0e-07 58.2 35 77.1
MELO3C023826.2 Cucumis melo HOM05D001872 ORTHO05D001859 3.0e-07 58.2 33 81.8
CsaV3_5G006680 Cucumis sativus L. HOM05D001872 ORTHO05D001859 3.0e-07 58.2 35 77.1
MD07G1189500 Malus domestica HOM05D001872 ORTHO05D001859 3.0e-07 58.2 33 81.8
QL08p057874 Quercus lobata HOM05D001872 ORTHO05D001859 3.0e-07 58.2 33 81.8
Rhsim09G0158400 Rhododendron simsii HOM05D001872 ORTHO05D001859 3.0e-07 58.2 35 74.3
RcHm_v2.0_Chr1g0365431 Rosa chinensis HOM05D001872 ORTHO05D001859 3.0e-07 58.2 33 75.8
Sed0015050 Sechium edule HOM05D001872 ORTHO05D001859 3.0e-07 58.2 54 61.1
AagrBONN_evm.TU.Sc2ySwM_117.162 Anthoceros agrestis HOM05D001872 ORTHO05D001859 4.0e-07 57.8 31 87.1
Cc02_g08510 Coffea canephora HOM05D001872 ORTHO05D001859 4.0e-07 57.8 31 77.4
FvH4_7g19940 Fragaria vesca HOM05D001872 ORTHO05D001859 4.0e-07 57.8 33 75.8
FAN06G4837 Fragaria x ananassa HOM05D001872 ORTHO05D001859 4.0e-07 57.8 33 75.8
FAN10G4013 Fragaria x ananassa HOM05D001872 ORTHO05D001859 4.0e-07 57.8 33 75.8
SEGI_11009 Sequoiadendron giganteum HOM05D001872 ORTHO05D001859 4.0e-07 57.8 41 68.3
HPP92_015405 Vanilla planifolia HOM05D001872 ORTHO05D001859 4.0e-07 57.8 31 80.6
Atru.chr12.566 Acer truncatum HOM05D001872 ORTHO05D001859 5.2e-07 57.4 35 68.6
Lalb_Chr02g0144001 Lupinus albus HOM05D001872 ORTHO05D001859 6.7e-07 57.0 35 71.4
FAN03G1920 Fragaria x ananassa HOM05D001872 ORTHO05D001859 8.8e-07 56.6 33 72.7
Lalb_Chr21g0307311 Lupinus albus HOM05D001872 ORTHO05D001859 8.8e-07 56.6 36 72.2
MD01G1120300 Malus domestica HOM05D001872 ORTHO05D001859 8.8e-07 56.6 33 75.8
Thecc.10G058400 Theobroma cacao HOM05D001872 ORTHO05D001859 8.8e-07 56.6 44 61.4
ECA233G6054 Erigeron canadensis HOM05D001872 ORTHO05D001859 1.2e-06 56.2 31 83.9
HPP92_026992 Vanilla planifolia HOM05D001872 ORTHO05D001859 1.2e-06 56.2 31 77.4
Actinidia06498 Actinidia chinensis HOM05D001872 ORTHO05D001859 2.0e-06 55.5 33 78.8
MBI14_g32000_MAGBIO Magnolia biondii HOM05D001872 ORTHO05D001859 2.0e-06 55.5 41 63.4
GSVIVG01005965001 Vitis vinifera HOM05D001872 ORTHO05D001859 2.6e-06 55.1 30 73.3
Psat3g101720 Pisum sativum HOM05D001872 ORTHO05D001859 3.3e-06 54.7 35 68.6
Cc07_g13580 Coffea canephora HOM05D001872 ORTHO05D001859 4.4e-06 54.3 33 75.8
Potri.017G125100 Populus trichocarpa HOM05D001872 ORTHO05D001859 4.4e-06 54.3 33 72.7
CiPaw.01G281600 Carya illinoinensis HOM05D001872 ORTHO05D001859 5.7e-06 53.9 27 88.9
Sed0025725 Sechium edule HOM05D001872 ORTHO05D001859 5.7e-06 53.9 33 75.8
SMO201G0198 Selaginella moellendorffii HOM05D001872 ORTHO05D001859 5.7e-06 53.9 31 80.6
Aa31LG11G12950 Aethionema arabicum HOM05D001872 ORTHO05D001859 7.5e-06 53.5 33 72.7
Ciclev10012501m.g Citrus clementina HOM05D001872 ORTHO05D001859 7.5e-06 53.5 33 72.7
Hund13116 Selenicereus undatus HOM05D001872 ORTHO05D001859 7.5e-06 53.5 33 75.8
CiPaw.03G071000 Carya illinoinensis HOM05D001872 ORTHO05D001859 9.7e-06 53.1 33 72.7
Hma1.2p1_0524F.1_g172320 Hydrangea macrophylla HOM05D001872 ORTHO05D001859 9.7e-06 53.1 34 70.6
Hma1.2p1_1840F.1_g304910 Hydrangea macrophylla HOM05D001872 ORTHO05D001859 9.7e-06 53.1 34 70.6
GSVIVG01030734001 Vitis vinifera HOM05D001872 ORTHO05D001859 9.7e-06 53.1 38 65.8


User provided reference genes

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