Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p43640 Brassica napus HOM05D005786 ORTHO05D006946 2.7e-166 588.6 294 100.0
BcaC02g09515 Brassica carinata HOM05D005786 ORTHO05D006946 3.0e-165 585.1 294 99.3
A04p10160 Brassica napus HOM05D005786 ORTHO05D006946 3.1e-162 575.1 294 97.6
BraA04t16680Z Brassica rapa HOM05D005786 ORTHO05D006946 5.3e-162 574.3 297 97.3
BcaB06g27020 Brassica carinata HOM05D005786 ORTHO05D006946 1.2e-161 573.2 295 97.6
Sp7g05900 Schrenkiella parvula HOM05D005786 ORTHO05D006946 8.4e-152 540.4 298 92.6
Thhalv10004459m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 2.9e-144 515.4 304 87.8
THA.LOC104805701 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 1.5e-124 449.9 294 79.6
Carub.0002s1084 Capsella rubella HOM05D005786 ORTHO05D006946 7.5e-124 447.6 299 78.6
AT1G65270 Arabidopsis thaliana HOM05D005786 ORTHO05D006946 2.8e-123 445.7 298 79.5
THA.LOC104823809 Tarenaya hassleriana HOM05D005786 ORTHO05D006946 2.4e-122 442.6 280 80.7
AL2G20300 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 1.2e-121 440.3 297 78.1
CARHR056920 Cardamine hirsuta HOM05D005786 ORTHO05D006946 4.5e-121 438.3 300 75.7
Aa31LG2G2390 Aethionema arabicum HOM05D005786 ORTHO05D006946 1.0e-120 437.2 298 76.2
Thhalv10018947m.g Eutrema salsugineum HOM05D005786 ORTHO05D006946 2.9e-120 435.6 300 74.7
Sp5g19940 Schrenkiella parvula HOM05D005786 ORTHO05D006946 2.5e-119 432.6 285 76.1
BcaB05g24100 Brassica carinata HOM05D005786 ORTHO05D006946 2.0e-116 422.9 278 77.0
BraA02t06369Z Brassica rapa HOM05D005786 ORTHO05D006946 3.1e-114 415.6 278 74.5
CANSAT54G1960 Cannabis sativa HOM05D005786 ORTHO05D006946 3.1e-114 415.6 294 73.1
Prupe.6G363100 Prunus persica HOM05D005786 ORTHO05D006946 3.1e-114 415.6 301 73.4
Duzib235G1473 Durio zibethinus HOM05D005786 ORTHO05D006946 7.0e-114 414.5 297 72.4
Gohir.A02G112711 Gossypium hirsutum HOM05D005786 ORTHO05D006946 9.1e-114 414.1 297 72.1
Gohir.D03G060604 Gossypium hirsutum HOM05D005786 ORTHO05D006946 1.2e-113 413.7 297 72.1
FvH4_6g00240 Fragaria vesca HOM05D005786 ORTHO05D006946 2.0e-113 412.9 283 73.9
Thecc.05G189200 Theobroma cacao HOM05D005786 ORTHO05D006946 2.0e-113 412.9 297 71.4
A02p13150 Brassica napus HOM05D005786 ORTHO05D006946 1.3e-112 410.2 278 74.5
Gorai.002G056000 Gossypium raimondii HOM05D005786 ORTHO05D006946 1.3e-112 410.2 300 71.7
Cfa006249 Carpinus fangiana HOM05D005786 ORTHO05D006946 6.5e-112 407.9 289 71.6
MD12G1263300 Malus domestica HOM05D005786 ORTHO05D006946 2.5e-111 406.0 294 71.1
MD04G1246900 Malus domestica HOM05D005786 ORTHO05D006946 4.2e-111 405.2 300 71.0
RcHm_v2.0_Chr3g0447611 Rosa chinensis HOM05D005786 ORTHO05D006946 2.1e-110 402.9 301 70.8
CiPaw.07G082100 Carya illinoinensis HOM05D005786 ORTHO05D006946 3.0e-109 399.1 294 69.4
GSVIVG01019061001 Vitis vinifera HOM05D005786 ORTHO05D006946 1.5e-108 396.7 293 72.4
Actinidia06794 Actinidia chinensis HOM05D005786 ORTHO05D006946 2.6e-108 396.0 294 68.7
Oeu034777.1 Olea europaea HOM05D005786 ORTHO05D006946 2.6e-108 396.0 299 69.6
Manes.13G003500 Manihot esculenta HOM05D005786 ORTHO05D006946 7.5e-108 394.4 295 68.8
Ciclev10012322m.g Citrus clementina HOM05D005786 ORTHO05D006946 1.4e-106 390.2 302 69.9
Ca_08003_v3 Cicer arietinum L. HOM05D005786 ORTHO05D006946 1.8e-106 389.8 296 68.2
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 2.4e-106 389.4 292 68.8
Phvul.008G052600 Phaseolus vulgaris HOM05D005786 ORTHO05D006946 3.1e-106 389.0 284 68.7
C02p21270 Brassica napus HOM05D005786 ORTHO05D006946 5.4e-106 388.3 286 69.9
Lalb_Chr03g0038061 Lupinus albus HOM05D005786 ORTHO05D006946 2.0e-105 386.3 300 68.0
Dinv29083 Davidia involucrata HOM05D005786 ORTHO05D006946 5.9e-105 384.8 302 68.5
arahy.Tifrunner.gnm1.ann1.BC747V Arachis hypogaea HOM05D005786 ORTHO05D006946 1.3e-104 383.6 289 68.2
arahy.Tifrunner.gnm1.ann1.K5KE50 Arachis hypogaea HOM05D005786 ORTHO05D006946 1.3e-104 383.6 289 67.8
Medtr7g080350 Medicago truncatula HOM05D005786 ORTHO05D006946 1.7e-104 383.3 300 66.0
FAN05G2398 Fragaria x ananassa HOM05D005786 ORTHO05D006946 2.9e-104 382.5 309 66.0
PGR031G0068 Punica granatum HOM05D005786 ORTHO05D006946 2.9e-104 382.5 280 72.5
Potri.019G055100 Populus trichocarpa HOM05D005786 ORTHO05D006946 4.3e-103 378.6 295 68.8
FAN09G1835 Fragaria x ananassa HOM05D005786 ORTHO05D006946 9.5e-103 377.5 302 66.9
MSTRG.335 Avicennia marina HOM05D005786 ORTHO05D006946 2.1e-102 376.3 299 66.9
Glyma.18G244000 Glycine max HOM05D005786 ORTHO05D006946 2.1e-102 376.3 267 70.0
Nn7g37593 Nelumbo nucifera HOM05D005786 ORTHO05D006946 2.8e-102 375.9 290 67.9
CSS0002276 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.6e-102 375.6 309 65.4
VMungo1383G2134 Vigna mungo HOM05D005786 ORTHO05D006946 3.6e-102 375.6 283 66.1
TWI18G0853 Tripterygium wilfordii HOM05D005786 ORTHO05D006946 4.7e-102 375.2 290 66.2
Glyma.09G248700 Glycine max HOM05D005786 ORTHO05D006946 1.8e-101 373.2 267 68.2
Migut.F01861 Erythranthe guttata HOM05D005786 ORTHO05D006946 2.3e-101 372.9 298 67.4
Atru.chr12.1725 Acer truncatum HOM05D005786 ORTHO05D006946 5.2e-101 371.7 268 70.1
Lj1g0012134 Lotus japonicus HOM05D005786 ORTHO05D006946 5.2e-101 371.7 289 65.7
Sc16g0010480 Simmondsia chinensis HOM05D005786 ORTHO05D006946 6.8e-101 371.3 297 65.0
Dinv15702 Davidia involucrata HOM05D005786 ORTHO05D006946 3.4e-100 369.0 306 65.7
PSO210G0333 Papaver somniferum HOM05D005786 ORTHO05D006946 9.8e-100 367.5 293 66.2
PSO832G0344 Papaver somniferum HOM05D005786 ORTHO05D006946 1.7e-99 366.7 287 66.6
FAN14G0011 Fragaria x ananassa HOM05D005786 ORTHO05D006946 6.4e-99 364.8 310 63.9
Cc09_g03910 Coffea canephora HOM05D005786 ORTHO05D006946 1.8e-98 363.2 296 65.2
Aqoxy5G04319 Aquilegia oxysepala HOM05D005786 ORTHO05D006946 2.4e-98 362.8 294 65.6
CAN.G37.2 Capsicum annuum HOM05D005786 ORTHO05D006946 4.1e-98 362.1 300 65.7
TAR633G0414 Trochodendron aralioides HOM05D005786 ORTHO05D006946 2.0e-97 359.8 297 65.3
Hund07363 Selenicereus undatus HOM05D005786 ORTHO05D006946 2.7e-97 359.4 310 61.6
Lj1A579T43 Lonicera japonica HOM05D005786 ORTHO05D006946 4.6e-97 358.6 338 58.3
Sopen04g017810 Solanum pennellii HOM05D005786 ORTHO05D006946 1.7e-96 356.7 285 68.1
Sed0025282 Sechium edule HOM05D005786 ORTHO05D006946 1.5e-95 353.6 291 63.6
HanXRQChr04g0101081 Helianthus annuus HOM05D005786 ORTHO05D006946 2.5e-95 352.8 288 63.9
CARHR216460 Cardamine hirsuta HOM05D005786 ORTHO05D006946 5.6e-95 351.7 193 89.6
Nitab4.5_0003825g0070 Nicotiana tabacum HOM05D005786 ORTHO05D006946 7.3e-95 351.3 291 64.3
DCAR_030004 Daucus carota HOM05D005786 ORTHO05D006946 3.6e-94 349.0 292 61.6
Sabra19G0064300 Salix brachista HOM05D005786 ORTHO05D006946 4.7e-94 348.6 330 59.7
Lsat_1_v5_gn_0_14820 Lactuca sativa HOM05D005786 ORTHO05D006946 8.0e-94 347.8 302 61.9
EL10Ac4g10004 Beta vulgaris HOM05D005786 ORTHO05D006946 3.4e-92 342.4 296 60.8
SalBow6G2392 Salvia bowleyana HOM05D005786 ORTHO05D006946 3.4e-92 342.4 281 65.5
ECA232G2695 Erigeron canadensis HOM05D005786 ORTHO05D006946 9.8e-92 340.9 290 64.5
CsaV3_1G044270 Cucumis sativus L. HOM05D005786 ORTHO05D006946 1.3e-91 340.5 297 61.6
HPP92_023718 Vanilla planifolia HOM05D005786 ORTHO05D006946 8.3e-91 337.8 293 60.1
MELO3C010021.2 Cucumis melo HOM05D005786 ORTHO05D006946 1.4e-90 337.0 297 60.9
SGA_v2.0_scaffold340G49308 Striga asiatica HOM05D005786 ORTHO05D006946 2.8e-86 322.8 299 60.5
MBI07_g02892_MAGBIO Magnolia biondii HOM05D005786 ORTHO05D006946 2.3e-85 319.7 271 62.0
AUR62006638 Chenopodium quinoa HOM05D005786 ORTHO05D006946 3.4e-84 315.8 320 56.6
Peaxi162Scf01053g00210 Petunia axillaris HOM05D005786 ORTHO05D006946 4.4e-84 315.5 292 61.3
Nitab4.5_0000248g0060 Nicotiana tabacum HOM05D005786 ORTHO05D006946 1.1e-82 310.8 291 59.8
Lsat_1_v5_gn_2_63981 Lactuca sativa HOM05D005786 ORTHO05D006946 1.4e-82 310.5 296 59.1
CDE04G1735 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 9.2e-82 307.8 290 61.0
ATR0743G231 Amborella trichopoda HOM05D005786 ORTHO05D006946 2.7e-81 306.2 276 59.8
CSS0048270 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 1.2e-78 297.4 247 62.8
CDE07G0365 Ceratophyllum demersum HOM05D005786 ORTHO05D006946 1.6e-78 297.0 291 59.1
SEGI_32803 Sequoiadendron giganteum HOM05D005786 ORTHO05D006946 5.8e-76 288.5 286 52.8
Zm00001eb168750 Zea mays HOM05D005786 ORTHO05D006946 2.2e-75 286.6 309 55.0
Os11g0264600 Oryza sativa ssp. japonica HOM05D005786 ORTHO05D006946 9.2e-74 281.2 225 62.7
unitig_0.g385 Utricularia gibba HOM05D005786 ORTHO05D006946 2.0e-68 263.5 292 52.1
Psat3g102080 Pisum sativum HOM05D005786 ORTHO05D006946 1.7e-67 260.4 190 68.9
SMO203G0033 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 2.8e-62 243.0 293 48.5
Actinidia03265 Actinidia chinensis HOM05D005786 ORTHO05D006946 4.5e-60 235.7 175 66.9
Solyc04g047720.4 Solanum lycopersicum HOM05D005786 ORTHO05D006946 2.2e-59 233.4 184 67.9
Mapoly0069s0067 Marchantia polymorpha HOM05D005786 ORTHO05D006946 9.3e-58 228.0 297 45.5
BcaC03g14691 Brassica carinata HOM05D005786 ORTHO05D006946 1.6e-57 227.3 193 62.7
QL01p048186 Quercus lobata HOM05D005786 ORTHO05D006946 1.9e-55 220.3 165 67.9
Cpa.g.sc123.39 Carica papaya HOM05D005786 ORTHO05D006946 5.6e-55 218.8 219 54.3
Eucgr.H01412 Eucalyptus grandis HOM05D005786 ORTHO05D006946 3.6e-54 216.1 141 70.2
Haze_04585 Corylus avellana HOM05D005786 ORTHO05D006946 5.3e-53 212.2 149 71.1
vmacro19569 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 2.0e-52 210.3 177 63.3
SMO357G0021 Selaginella moellendorffii HOM05D005786 ORTHO05D006946 1.0e-48 198.0 293 42.0
FAN02G1732 Fragaria x ananassa HOM05D005786 ORTHO05D006946 1.3e-48 197.6 142 69.0
Pp3c3_22280 Physcomitrium patens HOM05D005786 ORTHO05D006946 5.1e-48 195.7 294 41.5
AagrBONN_evm.TU.Sc2ySwM_368.936 Anthoceros agrestis HOM05D005786 ORTHO05D006946 1.8e-45 187.2 273 39.6
AagrBONN_evm.TU.Sc2ySwM_117.2462 Anthoceros agrestis HOM05D005786 ORTHO05D006946 2.2e-43 180.3 278 38.8
CSS0025324 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 3.2e-42 176.4 151 62.3
Haze_04584 Corylus avellana HOM05D005786 ORTHO05D006946 7.1e-42 175.3 124 71.0
CSS0033529 Camellia sinensis var. sinensis HOM05D005786 ORTHO05D006946 9.0e-37 158.3 153 56.2
CARHR216470 Cardamine hirsuta HOM05D005786 ORTHO05D006946 2.1e-33 147.1 110 75.5
Cpa.g.sc123.40 Carica papaya HOM05D005786 ORTHO05D006946 1.5e-28 131.0 105 65.7
Medtr3g103380 Medicago truncatula HOM05D005786 ORTHO05D006946 2.6e-28 130.2 89 64.0
vmacro19570 Vaccinium macrocarpon HOM05D005786 ORTHO05D006946 5.9e-28 129.0 105 67.6
ClCG03G010290 Citrullus lanatus HOM05D005786 ORTHO05D006946 3.8e-27 126.3 137 56.9
ClCG03G010310 Citrullus lanatus HOM05D005786 ORTHO05D006946 9.4e-26 121.7 117 59.0
AL2G20340 Arabidopsis lyrata HOM05D005786 ORTHO05D006946 6.1e-25 119.0 89 75.3
Oeu040717.1 Olea europaea HOM05D005786 ORTHO05D006946 8.8e-24 115.2 102 66.7
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 4.4e-23 112.8 157 49.7
Ah.04g159110 Amaranthus hybridus HOM05D005786 ORTHO05D006946 3.4e-20 103.2 99 59.6
CBR_g36458 Chara braunii HOM05D005786 ORTHO05D006946 3.4e-20 103.2 288 33.0
BolC2t08267H Brassica oleracea HOM05D005786 ORTHO05D006946 9.4e-18 95.1 88 61.4
Eucgr.H01411 Eucalyptus grandis HOM05D005786 ORTHO05D006946 6.7e-16 89.0 77 62.3
MCO14G575 Micromonas commoda HOM05D005786 ORTHO05D006946 2.2e-14 84.0 240 28.3
PRCOL_00005036 Prasinoderma coloniale HOM05D005786 ORTHO05D006946 7.2e-10 68.9 169 30.8


User provided reference genes

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