Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 2.4e-162 575.5 298 100.0
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 2.5e-159 565.5 301 98.0
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 3.6e-158 561.6 301 98.3
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 8.9e-149 530.4 302 92.4
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 1.6e-145 519.6 307 91.5
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 3.2e-138 495.4 302 87.1
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 5.1e-104 381.7 309 71.2
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 2.7e-89 332.8 308 63.6
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 9.4e-74 281.2 302 59.9
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 7.9e-73 278.1 313 57.5
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 2.2e-70 270.0 314 56.1
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 2.0e-63 246.9 310 52.9
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 1.3e-54 217.6 349 45.6
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 3.2e-42 176.4 304 41.4
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 7.2e-42 175.3 305 42.3
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 5.7e-39 165.6 343 38.2
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 2.8e-38 163.3 355 36.1
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 8.3e-38 161.8 343 38.2
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 1.8e-37 160.6 305 41.0
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 2.7e-36 156.8 353 35.4
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 7.7e-36 155.2 169 53.8
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 5.0e-35 152.5 326 37.7
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 1.1e-34 151.4 314 38.2
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 3.0e-27 126.7 336 33.3
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 2.0e-23 114.0 375 28.5
Thhalv10022484m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 1.6e-20 104.4 312 34.0
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 4.6e-20 102.8 249 34.1
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 6.8e-16 89.0 223 33.6
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 8.9e-16 88.6 298 29.5
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 1.5e-15 87.8 373 25.5
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 4.4e-15 86.3 219 33.8
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 5.8e-15 85.9 379 26.4
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 1.7e-14 84.3 229 35.4
CDE05G2205 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 4.9e-14 82.8 307 25.4
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 2.4e-13 80.5 300 26.0
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 3.2e-13 80.1 97 46.4
QL01p050471 Quercus lobata HOM05D007504 ORTHO05D007629 2.7e-12 77.0 74 50.0
Cpa.g.sc123.14 Carica papaya HOM05D007504 ORTHO05D007629 3.5e-12 76.6 75 52.0
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 3.5e-12 76.6 87 48.3
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 4.6e-12 76.3 356 25.3
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 6.0e-12 75.9 455 23.5
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 7.8e-12 75.5 97 47.4
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 1.0e-11 75.1 366 25.7
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 1.3e-11 74.7 97 45.4
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.7e-11 74.3 183 35.5
Haze_04521 Corylus avellana HOM05D007504 ORTHO05D007629 2.3e-11 73.9 75 50.7
Lj7A601T114 Lonicera japonica HOM05D007504 ORTHO05D007629 2.3e-11 73.9 91 46.2
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 3.0e-11 73.6 88 47.7
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 3.0e-11 73.6 183 35.5
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 3.9e-11 73.2 448 25.9
GSVIVG01019149001 Vitis vinifera HOM05D007504 ORTHO05D007629 3.9e-11 73.2 156 34.6
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 6.6e-11 72.4 79 49.4
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 6.6e-11 72.4 97 42.3
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 8.6e-11 72.0 350 24.9
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 1.1e-10 71.6 90 47.8
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 1.1e-10 71.6 87 40.2
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 1.5e-10 71.2 96 41.7
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 1.9e-10 70.9 96 46.9
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 2.5e-10 70.5 89 41.6
CSS0029071 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 4.3e-10 69.7 78 42.3
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 4.3e-10 69.7 76 46.1
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 4.3e-10 69.7 98 42.9
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 5.6e-10 69.3 76 46.1
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 5.6e-10 69.3 126 39.7
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 5.6e-10 69.3 186 33.9
MBI07_g00623_MAGBIO Magnolia biondii HOM05D007504 ORTHO05D007629 5.6e-10 69.3 74 48.6
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 7.3e-10 68.9 98 43.9
Medtr1g078420 Medicago truncatula HOM05D007504 ORTHO05D007629 7.3e-10 68.9 185 30.3
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 9.5e-10 68.6 259 25.9
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 2.1e-09 67.4 98 39.8
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 2.1e-09 67.4 101 42.6
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 2.1e-09 67.4 82 43.9
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 2.1e-09 67.4 116 38.8
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 3.6e-09 66.6 182 29.7
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 3.6e-09 66.6 65 50.8
TAR636G3585 Trochodendron aralioides HOM05D007504 ORTHO05D007629 3.6e-09 66.6 93 41.9
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 4.7e-09 66.2 98 43.9
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 4.7e-09 66.2 98 43.9
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 4.7e-09 66.2 76 46.1
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 8.1e-09 65.5 177 28.8
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 8.1e-09 65.5 467 21.8
Ciclev10011923m.g Citrus clementina HOM05D007504 ORTHO05D007629 8.1e-09 65.5 144 34.0
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 8.1e-09 65.5 154 33.8
ClCG01G008930 Citrullus lanatus HOM05D007504 ORTHO05D007629 1.1e-08 65.1 362 23.2
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 1.4e-08 64.7 95 41.1
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 2.3e-08 63.9 92 42.4
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 2.3e-08 63.9 82 40.2
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 2.3e-08 63.9 87 44.8
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.3e-08 63.9 82 40.2
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.3e-08 63.9 82 40.2
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 2.3e-08 63.9 68 48.5
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 2.3e-08 63.9 128 35.9
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 6.8e-08 62.4 152 32.2
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 8.9e-08 62.0 76 44.7
ATR0609G092 Amborella trichopoda HOM05D007504 ORTHO05D007629 2.0e-07 60.8 74 45.9
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 2.0e-07 60.8 79 43.0
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 2.0e-07 60.8 252 27.4
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 5.8e-07 59.3 81 40.7
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 5.8e-07 59.3 67 43.3
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 7.6e-07 58.9 76 43.4
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 9.9e-07 58.5 161 31.1
Lsat_1_v5_gn_8_3001 Lactuca sativa HOM05D007504 ORTHO05D007629 9.9e-07 58.5 125 34.4
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.3e-06 58.2 65 43.1
HPP92_009958 Vanilla planifolia HOM05D007504 ORTHO05D007629 1.3e-06 58.2 72 43.1
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 1.7e-06 57.8 87 37.9
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 2.2e-06 57.4 168 32.1
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 2.9e-06 57.0 171 29.8
Phvul.010G077946 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 3.8e-06 56.6 75 37.3
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 3.8e-06 56.6 65 44.6
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 4.9e-06 56.2 70 42.9
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 6.4e-06 55.8 89 37.1
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 8.4e-06 55.5 128 35.9


User provided reference genes

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