Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p42970 Brassica napus HOM05D007792 ORTHO05D009931 1.8e-35 152.1 80 100.0
BNapus_Darmor_BZH_scaffold_287p00200 Brassica napus HOM05D007792 ORTHO05D009931 3.7e-33 144.4 79 96.2
C02p43590 Brassica napus HOM05D007792 ORTHO05D009931 3.7e-33 144.4 79 96.2
C06p22950 Brassica napus HOM05D007792 ORTHO05D009931 3.7e-33 144.4 79 96.2
BolSC29t60477H Brassica oleracea HOM05D007792 ORTHO05D009931 3.7e-33 144.4 79 96.2
BolSC29t60598H Brassica oleracea HOM05D007792 ORTHO05D009931 3.7e-33 144.4 79 96.2
BolSC47t61086H Brassica oleracea HOM05D007792 ORTHO05D009931 3.7e-33 144.4 79 96.2
BraSC138t45565Z Brassica rapa HOM05D007792 ORTHO05D009931 3.7e-33 144.4 79 96.2
BraSC25t45855Z Brassica rapa HOM05D007792 ORTHO05D009931 3.7e-33 144.4 79 96.2
BraSC58t46432Z Brassica rapa HOM05D007792 ORTHO05D009931 3.7e-33 144.4 79 96.2
AL2G21630 Arabidopsis lyrata HOM05D007792 ORTHO05D009931 4.5e-31 137.5 79 92.4
ATCG00660 Arabidopsis thaliana HOM05D007792 ORTHO05D009931 4.5e-31 137.5 79 92.4
CARHR282170 Cardamine hirsuta HOM05D007792 ORTHO05D009931 4.5e-31 137.5 79 92.4
BolC6t36199H Brassica oleracea HOM05D007792 ORTHO05D009931 5.9e-31 137.1 79 91.1
BraSC58t46493Z Brassica rapa HOM05D007792 ORTHO05D009931 1.1e-29 132.9 81 90.1
BolC2t08921H Brassica oleracea HOM05D007792 ORTHO05D009931 3.2e-29 131.3 79 88.6
PSO548G0123 Papaver somniferum HOM05D007792 ORTHO05D009931 8.8e-27 123.2 79 79.7
RcHm_v2.0_CPg0502001 Rosa chinensis HOM05D007792 ORTHO05D009931 1.5e-26 122.5 79 78.5
Oeu053978.1 Olea europaea HOM05D007792 ORTHO05D009931 2.0e-26 122.1 79 82.3
Solyc00g180440.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 4.3e-26 120.9 79 81.0
Oeu028775.1 Olea europaea HOM05D007792 ORTHO05D009931 9.7e-26 119.8 79 81.0
Oeu058366.1 Olea europaea HOM05D007792 ORTHO05D009931 9.7e-26 119.8 79 81.0
CAN.G1148.9 Capsicum annuum HOM05D007792 ORTHO05D009931 3.7e-25 117.9 79 78.5
CAN.G2018.13 Capsicum annuum HOM05D007792 ORTHO05D009931 3.7e-25 117.9 79 78.5
CAN.G438.83 Capsicum annuum HOM05D007792 ORTHO05D009931 3.7e-25 117.9 79 78.5
SalBow1G1024 Salvia bowleyana HOM05D007792 ORTHO05D009931 4.8e-25 117.5 79 77.2
Sed0001088 Sechium edule HOM05D007792 ORTHO05D009931 4.8e-25 117.5 79 77.2
Sed0026344 Sechium edule HOM05D007792 ORTHO05D009931 4.8e-25 117.5 79 77.2
Sed0027103 Sechium edule HOM05D007792 ORTHO05D009931 4.8e-25 117.5 79 77.2
MELO3C027088.2 Cucumis melo HOM05D007792 ORTHO05D009931 1.1e-24 116.3 79 75.9
Nn021s41529 Nelumbo nucifera HOM05D007792 ORTHO05D009931 1.4e-24 115.9 82 76.8
Nn6g32081 Nelumbo nucifera HOM05D007792 ORTHO05D009931 1.4e-24 115.9 82 76.8
PGR111G0084 Punica granatum HOM05D007792 ORTHO05D009931 1.8e-24 115.5 79 77.2
Gohir.A12G229400 Gossypium hirsutum HOM05D007792 ORTHO05D009931 2.4e-24 115.2 79 77.2
Gohir.D01G101995 Gossypium hirsutum HOM05D007792 ORTHO05D009931 2.4e-24 115.2 79 78.5
Solyc11g063720.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 3.1e-24 114.8 79 75.9
Solyc11g063440.3 Solanum lycopersicum HOM05D007792 ORTHO05D009931 4.1e-24 114.4 79 75.9
DCAR_032507 Daucus carota HOM05D007792 ORTHO05D009931 5.3e-24 114.0 79 77.2
CARHR287410 Cardamine hirsuta HOM05D007792 ORTHO05D009931 1.2e-23 112.8 71 85.9
HanXRQChr01g0020291 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-23 112.8 79 75.9
HanXRQChr04g0094291 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-23 112.8 79 75.9
HanXRQChr04g0095111 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-23 112.8 79 75.9
HanXRQChr10g0283611 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-23 112.8 79 75.9
HanXRQChr10g0284301 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-23 112.8 79 75.9
HanXRQChr10g0318141 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-23 112.8 79 75.9
HanXRQChr11g0326891 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-23 112.8 79 75.9
HanXRQCPg0580101 Helianthus annuus HOM05D007792 ORTHO05D009931 1.2e-23 112.8 79 75.9
Sc09g0009720 Simmondsia chinensis HOM05D007792 ORTHO05D001488 1.5e-23 112.5 73 79.5
Solyc11g063660.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 2.6e-23 111.7 79 73.4
Glyma.12G232100 Glycine max HOM05D007792 ORTHO05D009931 6.5e-22 107.1 80 71.2
Sc22g0003450 Simmondsia chinensis HOM05D002194 ORTHO05D002840 1.1e-21 106.3 78 71.8
HanXRQChr02g0052571 Helianthus annuus HOM05D007792 ORTHO05D009931 4.2e-21 104.4 79 70.9
Phvul.002G090500 Phaseolus vulgaris HOM05D007792 ORTHO05D009931 5.5e-21 104.0 80 70.0
LjContig00318g0025275 Lotus japonicus HOM05D007792 ORTHO05D009931 9.4e-21 103.2 83 65.1
Lalb_Chr07g0192061 Lupinus albus HOM05D007792 ORTHO05D009931 1.2e-20 102.8 69 76.8
Lalb_Chr08g0237911 Lupinus albus HOM05D007792 ORTHO05D009931 1.2e-20 102.8 69 76.8
Lalb_Chr23g0274331 Lupinus albus HOM05D007792 ORTHO05D009931 4.7e-20 100.9 77 70.1
MELO3C028023.2 Cucumis melo HOM05D007792 ORTHO05D009931 6.1e-20 100.5 71 71.8
Aqoxy2G00943 Aquilegia oxysepala HOM05D007792 ORTHO05D009931 1.0e-19 99.8 71 74.6
Sed0005117 Sechium edule HOM05D007792 ORTHO05D009931 1.8e-19 99.0 75 68.0
Gohir.A02G053101 Gossypium hirsutum HOM05D007792 ORTHO05D009931 3.0e-19 98.2 75 69.3
arahy.Tifrunner.gnm1.ann1.H056B9 Arachis hypogaea HOM05D007792 ORTHO05D009931 3.9e-19 97.8 69 73.9
Gohir.A11G230404 Gossypium hirsutum HOM05D007792 ORTHO05D009931 5.7e-18 94.0 64 76.6
Medtr4g034720 Medicago truncatula HOM05D007792 ORTHO05D009931 9.7e-18 93.2 73 64.4
Medtr7g085940 Medicago truncatula HOM05D007792 ORTHO05D009931 9.7e-18 93.2 73 64.4
Gohir.D09G044333 Gossypium hirsutum HOM05D007792 ORTHO05D009931 2.8e-17 91.7 64 75.0
SGA_v2.0_scaffold479G52248 Striga asiatica HOM05D007792 ORTHO05D009931 1.6e-15 85.9 77 64.9
BolC8t52434H Brassica oleracea HOM05D007792 ORTHO05D009931 3.5e-15 84.7 81 65.4
Gorai.011G046100 Gossypium raimondii HOM05D007792 ORTHO05D009931 2.9e-14 81.6 64 68.8
MELO3C028123.2 Cucumis melo HOM05D007792 ORTHO05D009931 1.5e-13 79.3 57 68.4
Gorai.012G094800 Gossypium raimondii HOM05D007792 ORTHO05D009931 2.5e-13 78.6 61 67.2
Gohir.D04G084960 Gossypium hirsutum HOM05D007792 ORTHO05D009931 7.2e-13 77.0 61 67.2
arahy.Tifrunner.gnm1.ann1.81C611 Arachis hypogaea HOM05D007792 ORTHO05D009931 1.8e-11 72.4 55 69.1
Glyma.01G201700 Glycine max HOM05D007792 ORTHO05D009931 4.0e-11 71.2 80 52.5
MD11G1294300 Malus domestica HOM05D007792 ORTHO05D009931 1.5e-10 69.3 42 85.7
Gorai.002G210300 Gossypium raimondii HOM05D007792 ORTHO05D009931 2.6e-10 68.6 54 68.5
Gohir.D01G169022 Gossypium hirsutum HOM05D007792 ORTHO05D009931 3.7e-09 64.7 54 66.7
Gohir.A10G134900 Gossypium hirsutum HOM05D007792 ORTHO05D009931 6.3e-09 63.9 43 79.1
Eucgr.D02558 Eucalyptus grandis HOM05D007792 ORTHO05D009931 1.1e-08 63.2 55 63.6
arahy.Tifrunner.gnm1.ann1.4Z8JUD Arachis hypogaea HOM05D007792 ORTHO05D009931 2.7e-07 58.5 43 67.4
Haze_24215 Corylus avellana HOM05D002400 ORTHO05D002568 1.3e-06 56.2 41 61.0
BraSC103t45475Z Brassica rapa HOM05D007792 ORTHO05D009931 2.2e-06 55.5 50 66.0
Gorai.001G063300 Gossypium raimondii HOM05D007792 ORTHO05D009931 2.2e-06 55.5 39 74.4
Nitab4.5_0007104g0100 Nicotiana tabacum HOM05D007792 ORTHO05D009931 2.2e-06 55.5 41 65.9


User provided reference genes

Program Settings