Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p42520 Brassica napus HOM05D007891 ORTHO05D009992 2.1e-29 131.7 68 100.0
BcaC02g09428 Brassica carinata HOM05D007891 ORTHO05D009992 4.7e-29 130.6 68 98.5
A05p24400 Brassica napus HOM05D007891 ORTHO05D009992 8.8e-28 126.3 68 97.1
BraA05t21332Z Brassica rapa HOM05D007891 ORTHO05D009992 8.8e-28 126.3 68 97.1
BolC4t25828H Brassica oleracea HOM05D007891 ORTHO05D009992 2.0e-27 125.2 68 97.1
BcaC05g27811 Brassica carinata HOM05D007891 ORTHO05D009992 6.3e-26 120.2 68 95.6
C05p38140 Brassica napus HOM05D007891 ORTHO05D009992 6.3e-26 120.2 68 95.6
BcaB03g13704 Brassica carinata HOM05D007891 ORTHO05D009992 3.2e-22 107.8 68 86.8
C05p32460 Brassica napus HOM05D007891 ORTHO05D009992 6.1e-21 103.6 68 85.3
BolC5t31978H Brassica oleracea HOM05D007891 ORTHO05D009992 6.1e-21 103.6 68 85.3
A09p33310 Brassica napus HOM05D007891 ORTHO05D009992 8.0e-21 103.2 68 83.8
BraA09t38876Z Brassica rapa HOM05D007891 ORTHO05D009992 8.0e-21 103.2 68 83.8
Thhalv10009221m.g Eutrema salsugineum HOM05D007891 ORTHO05D009992 1.3e-18 95.9 64 79.7
AT1G33055 Arabidopsis thaliana HOM05D007891 ORTHO05D009992 2.8e-18 94.7 64 76.6
AL1G47370 Arabidopsis lyrata HOM05D007891 ORTHO05D009992 3.7e-18 94.4 61 80.3
Carub.0001s3132 Capsella rubella HOM05D007891 ORTHO05D009992 1.2e-16 89.4 58 82.8
BcaB04g17933 Brassica carinata HOM05D007891 ORTHO05D009992 2.7e-13 78.2 57 73.7
BcaNung04896 Brassica carinata HOM05D007891 ORTHO05D009992 2.3e-12 75.1 57 70.2
BolC8t47912H Brassica oleracea HOM05D007891 ORTHO05D009992 8.8e-12 73.2 57 68.4
THA.LOC104806463 Tarenaya hassleriana HOM05D007891 ORTHO05D009992 4.8e-10 67.4 48 68.8
Aa31LG6G7600 Aethionema arabicum HOM05D007891 ORTHO05D009992 6.3e-10 67.0 57 59.6
Potri.011G149400 Populus trichocarpa HOM05D007891 ORTHO05D009992 1.6e-08 62.4 59 52.5
PGR042G1189 Punica granatum HOM05D007891 ORTHO05D009992 3.5e-08 61.2 60 53.3
Gohir.A08G108600 Gossypium hirsutum HOM05D007891 ORTHO05D009992 5.9e-08 60.5 61 55.7
Manes.01G000186 Manihot esculenta HOM05D007891 ORTHO05D009992 5.9e-08 60.5 59 52.5
Cfa011885 Carpinus fangiana HOM05D007891 ORTHO05D009992 7.7e-08 60.1 59 55.9
Ciclev10023227m.g Citrus clementina HOM05D007891 ORTHO05D009992 7.7e-08 60.1 65 52.3
COL.COLO4_10847 Corchorus olitorius HOM05D007891 ORTHO05D009992 7.7e-08 60.1 59 57.6
MD00G1096700 Malus domestica HOM05D007891 ORTHO05D009992 7.7e-08 60.1 53 56.6
RcHm_v2.0_Chr7g0187861 Rosa chinensis HOM05D007891 ORTHO05D009992 7.7e-08 60.1 62 51.6
MD06G1124700 Malus domestica HOM05D007891 ORTHO05D009992 1.3e-07 59.3 53 54.7
A08p08750 Brassica napus HOM05D007891 ORTHO05D009992 3.8e-07 57.8 45 71.1
Duzib205G0121 Durio zibethinus HOM05D007891 ORTHO05D009992 3.8e-07 57.8 55 58.2
Gohir.A02G095100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 5.0e-07 57.4 59 55.9
PSO063G6751 Papaver somniferum HOM05D007891 ORTHO05D009992 6.6e-07 57.0 60 51.7
Prupe.5G135300 Prunus persica HOM05D007891 ORTHO05D009992 6.6e-07 57.0 61 54.1
Gohir.D08G121300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 8.6e-07 56.6 59 55.9
Gorai.003G073400 Gossypium raimondii HOM05D007891 ORTHO05D009992 1.1e-06 56.2 59 54.2
ClCG01G001300 Citrullus lanatus HOM05D007891 ORTHO05D009992 1.9e-06 55.5 45 62.2
Gohir.D09G182100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 2.5e-06 55.1 60 53.3
Gorai.004G128000 Gossypium raimondii HOM05D007891 ORTHO05D009992 2.5e-06 55.1 59 54.2
Gorai.006G204200 Gossypium raimondii HOM05D007891 ORTHO05D009992 2.5e-06 55.1 60 53.3
QL12p003189 Quercus lobata HOM05D007891 ORTHO05D009992 2.5e-06 55.1 56 51.8
Gohir.D03G088400 Gossypium hirsutum HOM05D007891 ORTHO05D009992 3.3e-06 54.7 59 52.5
Sed0006175 Sechium edule HOM05D007891 ORTHO05D009992 3.3e-06 54.7 58 51.7
arahy.Tifrunner.gnm1.ann1.GMZ6HP Arachis hypogaea HOM05D007891 ORTHO05D009992 4.2e-06 54.3 53 52.8
Gohir.A09G187300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 4.2e-06 54.3 60 53.3
TWI15G0344 Tripterygium wilfordii HOM05D007891 ORTHO05D009992 4.2e-06 54.3 59 52.5
Thecc.03G215400 Theobroma cacao HOM05D007891 ORTHO05D009992 5.5e-06 53.9 59 54.2
ATR0579G034 Amborella trichopoda HOM05D007891 ORTHO05D009992 7.2e-06 53.5 45 62.2
BraA08t32886Z Brassica rapa HOM05D007891 ORTHO05D009992 7.2e-06 53.5 40 72.5
CsaV3_5G001430 Cucumis sativus L. HOM05D007891 ORTHO05D009992 7.2e-06 53.5 45 60.0
Os04g0581700 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 7.2e-06 53.5 45 60.0


User provided reference genes

Program Settings