Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 3.4e-94 348.2 164 100.0
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 1.1e-92 343.2 161 100.0
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 5.1e-90 334.3 164 95.7
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 3.3e-44 182.2 92 93.5
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 7.3e-44 181.0 110 80.9
BolC3t14531H Brassica oleracea HOM05D014151 ORTHO05D014954 4.7e-35 151.8 72 97.2
BolC1t05526H Brassica oleracea HOM05D014151 ORTHO05D014954 6.8e-34 147.9 71 95.8
BcaC09g47953 Brassica carinata HOM05D014151 ORTHO05D014954 3.0e-29 132.5 66 93.9
BolC9t55038H Brassica oleracea HOM05D014151 ORTHO05D014954 1.9e-23 113.2 54 94.4
BolC1t05527H Brassica oleracea HOM05D014151 ORTHO05D014954 2.4e-23 112.8 54 92.6
BcaC09g49152 Brassica carinata HOM05D014151 ORTHO05D014954 8.7e-13 77.8 41 87.8
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 2.8e-11 72.8 45 75.6
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 2.8e-11 72.8 45 75.6
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 6.2e-11 71.6 45 73.3
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 6.2e-11 71.6 45 73.3
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 6.2e-11 71.6 45 73.3
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 1.1e-10 70.9 45 73.3
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.1e-10 70.9 45 71.1
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.8e-10 70.1 45 71.1
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 2.4e-10 69.7 45 71.1
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 2.4e-10 69.7 45 71.1
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 2.4e-10 69.7 45 71.1
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 3.1e-10 69.3 42 76.2
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 4.0e-10 68.9 45 68.9
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 5.2e-10 68.6 45 68.9
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 5.2e-10 68.6 45 68.9
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 9.0e-10 67.8 45 68.9
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 1.5e-09 67.0 45 66.7
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 1.5e-09 67.0 45 66.7
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 1.5e-09 67.0 45 68.9
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 2.0e-09 66.6 45 66.7
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 2.0e-09 66.6 39 76.9
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 2.6e-09 66.2 39 76.9
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.6e-09 66.2 42 71.4
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.6e-09 66.2 42 71.4
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 2.6e-09 66.2 39 76.9
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 3.4e-09 65.9 45 66.7
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 3.4e-09 65.9 45 66.7
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 3.4e-09 65.9 45 66.7
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 3.4e-09 65.9 45 66.7
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 3.4e-09 65.9 42 71.4
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.4e-09 65.9 42 71.4
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.4e-09 65.9 42 71.4
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 3.4e-09 65.9 45 66.7
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 3.4e-09 65.9 45 66.7
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.4e-09 65.9 45 66.7
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.4e-09 65.9 45 66.7
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 4.4e-09 65.5 45 71.1
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 7.6e-09 64.7 45 66.7
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 7.6e-09 64.7 39 74.4
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 7.6e-09 64.7 46 67.4
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 7.6e-09 64.7 45 64.4
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 7.6e-09 64.7 42 71.4
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 7.6e-09 64.7 45 62.2
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 7.6e-09 64.7 42 71.4
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 7.6e-09 64.7 45 64.4
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 7.6e-09 64.7 37 78.4
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 7.6e-09 64.7 42 71.4
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 7.6e-09 64.7 45 64.4
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 7.6e-09 64.7 42 71.4
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 9.9e-09 64.3 45 62.2
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 1.3e-08 63.9 39 74.4
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 1.3e-08 63.9 39 74.4
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 1.3e-08 63.9 39 74.4
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 1.3e-08 63.9 39 74.4
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 1.3e-08 63.9 39 74.4
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 1.3e-08 63.9 39 74.4
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 1.3e-08 63.9 39 74.4
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 1.3e-08 63.9 39 74.4
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 1.3e-08 63.9 39 74.4
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 1.7e-08 63.5 45 62.2
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.7e-08 63.5 42 69.0
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.7e-08 63.5 42 69.0
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.7e-08 63.5 42 69.0
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 1.7e-08 63.5 42 69.0
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 1.7e-08 63.5 45 64.4
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 1.7e-08 63.5 45 64.4
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.2e-08 63.2 45 62.2
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.2e-08 63.2 45 62.2
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 2.2e-08 63.2 39 71.8
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 2.2e-08 63.2 39 71.8
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 2.2e-08 63.2 45 62.2
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 2.2e-08 63.2 37 75.7
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 2.2e-08 63.2 39 74.4
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 2.2e-08 63.2 45 62.2
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 3.8e-08 62.4 45 64.4
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 3.8e-08 62.4 39 71.8
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 4.9e-08 62.0 42 66.7
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 4.9e-08 62.0 39 71.8
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 4.9e-08 62.0 42 66.7
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 4.9e-08 62.0 37 73.0
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 4.9e-08 62.0 39 71.8
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 4.9e-08 62.0 45 62.2
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 4.9e-08 62.0 39 71.8
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 4.9e-08 62.0 39 71.8
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 6.4e-08 61.6 45 60.0
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 1.1e-07 60.8 39 69.2
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 1.1e-07 60.8 39 69.2
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 1.1e-07 60.8 45 60.0
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 2.4e-07 59.7 37 70.3
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 2.4e-07 59.7 39 69.2
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 3.2e-07 59.3 39 66.7
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 3.2e-07 59.3 39 66.7
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 3.2e-07 59.3 45 57.8
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 5.4e-07 58.5 42 64.3
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 5.4e-07 58.5 42 64.3
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 9.3e-07 57.8 42 61.9
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 9.3e-07 57.8 39 66.7
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 1.2e-06 57.4 37 67.6
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.5e-06 55.8 45 55.6


User provided reference genes

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