Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p42060 Brassica napus HOM05D000357 ORTHO05D014416 1.9e-35 151.8 67 100.0
C05p36910 Brassica napus HOM05D000357 ORTHO05D014416 4.8e-26 120.6 61 88.5
C02p40990 Brassica napus HOM05D000357 ORTHO05D014416 2.9e-23 111.3 61 85.2
BolC1t03893H Brassica oleracea HOM05D000357 ORTHO05D014416 1.2e-21 105.9 60 80.0
BraA03t09564Z Brassica rapa HOM05D000357 ORTHO05D014416 8.7e-20 99.8 61 80.3
BraA04t16371Z Brassica rapa HOM05D000357 ORTHO05D000242 1.4e-14 82.4 57 66.7
BcaC02g09212 Brassica carinata HOM05D000357 ORTHO05D000242 2.4e-14 81.6 57 66.7
C04p40100 Brassica napus HOM05D000357 ORTHO05D000242 2.4e-14 81.6 57 66.7
BolC4t25586H Brassica oleracea HOM05D000357 ORTHO05D000242 2.4e-14 81.6 57 66.7
A09p45870 Brassica napus HOM05D000357 ORTHO05D000242 4.2e-14 80.9 63 61.9
BraA09t40049Z Brassica rapa HOM05D000357 ORTHO05D000242 4.2e-14 80.9 63 61.9
BcaB02g08551 Brassica carinata HOM05D000357 ORTHO05D000242 7.1e-14 80.1 58 63.8
BcaC07g39647 Brassica carinata HOM05D000357 ORTHO05D000242 9.3e-14 79.7 63 60.3
A07p21200 Brassica napus HOM05D000357 ORTHO05D000242 9.3e-14 79.7 62 61.3
C06p20690 Brassica napus HOM05D000357 ORTHO05D000242 9.3e-14 79.7 62 61.3
C08p28100 Brassica napus HOM05D000357 ORTHO05D000242 9.3e-14 79.7 63 60.3
BolC6t37252H Brassica oleracea HOM05D000357 ORTHO05D000242 9.3e-14 79.7 62 61.3
BolC8t50422H Brassica oleracea HOM05D000357 ORTHO05D000242 9.3e-14 79.7 63 60.3
BraA07t29807Z Brassica rapa HOM05D000357 ORTHO05D000242 9.3e-14 79.7 62 61.3
BcaB02g07814 Brassica carinata HOM05D000357 ORTHO05D000242 1.2e-13 79.3 62 61.3
BcaB01g00339 Brassica carinata HOM05D000357 ORTHO05D000242 2.1e-13 78.6 62 61.3
Sp5g09530 Schrenkiella parvula HOM05D000357 ORTHO05D000242 3.5e-13 77.8 63 58.7
BcaC08g44596 Brassica carinata HOM05D000357 ORTHO05D000242 4.6e-13 77.4 62 59.7
C01p45890 Brassica napus HOM05D000357 ORTHO05D014416 4.6e-13 77.4 53 66.0
BolC1t04551H Brassica oleracea HOM05D000357 ORTHO05D014416 4.6e-13 77.4 53 66.0
BolC9t53298H Brassica oleracea HOM05D000357 ORTHO05D014416 6.0e-13 77.0 53 66.0
BcaC01g05665 Brassica carinata HOM05D000357 ORTHO05D000242 7.9e-13 76.6 64 57.8
C03p23500 Brassica napus HOM05D000357 ORTHO05D000242 7.9e-13 76.6 64 57.8
BolC3t14746H Brassica oleracea HOM05D000357 ORTHO05D000242 7.9e-13 76.6 64 57.8
Thhalv10010758m.g Eutrema salsugineum HOM05D000357 ORTHO05D000242 1.0e-12 76.3 55 63.6
Aa31LG10G8070 Aethionema arabicum HOM05D000357 ORTHO05D000242 1.8e-12 75.5 64 56.2
BcaB01g03847 Brassica carinata HOM05D000357 ORTHO05D000242 1.8e-12 75.5 63 58.7
CARHR162680 Cardamine hirsuta HOM05D000357 ORTHO05D000242 1.8e-12 75.5 64 57.8
Sp4g18560 Schrenkiella parvula HOM05D000357 ORTHO05D000242 1.8e-12 75.5 58 62.1
A03p20060 Brassica napus HOM05D000357 ORTHO05D000242 5.1e-12 73.9 63 57.1
C09p24030 Brassica napus HOM05D000357 ORTHO05D014416 5.1e-12 73.9 53 64.2
BraA03t11256Z Brassica rapa HOM05D000357 ORTHO05D000242 5.1e-12 73.9 63 57.1
AL5G33580 Arabidopsis lyrata HOM05D000357 ORTHO05D000242 1.1e-11 72.8 79 49.4
THA.LOC104804978 Tarenaya hassleriana HOM05D000357 ORTHO05D000242 1.5e-11 72.4 59 59.3
AT2G36320 Arabidopsis thaliana HOM05D000357 ORTHO05D000242 1.9e-11 72.0 65 53.8
A04p06670 Brassica napus HOM05D000357 ORTHO05D000242 1.9e-11 72.0 44 70.5
BraA05t19905Z Brassica rapa HOM05D000357 ORTHO05D000242 1.9e-11 72.0 64 54.7
CARHR130610 Cardamine hirsuta HOM05D000357 ORTHO05D000242 2.5e-11 71.6 55 60.0
Thhalv10017322m.g Eutrema salsugineum HOM05D000357 ORTHO05D000242 2.5e-11 71.6 63 54.0
BcaC02g11748 Brassica carinata HOM05D000357 ORTHO05D000242 3.3e-11 71.2 57 59.6
C04p11790 Brassica napus HOM05D000357 ORTHO05D000242 3.3e-11 71.2 57 59.6
BolC4t22827H Brassica oleracea HOM05D000357 ORTHO05D000242 3.3e-11 71.2 57 59.6
AL4G32450 Arabidopsis lyrata HOM05D000357 ORTHO05D000242 4.3e-11 70.9 65 52.3
BcaB02g09361 Brassica carinata HOM05D000357 ORTHO05D000242 4.3e-11 70.9 64 53.1
Carub.0004s1809 Capsella rubella HOM05D000357 ORTHO05D000242 5.6e-11 70.5 53 60.4
AT3G52800 Arabidopsis thaliana HOM05D000357 ORTHO05D000242 7.4e-11 70.1 54 61.1
MBI17_g08134_MAGBIO Magnolia biondii HOM05D000357 ORTHO05D000242 1.3e-10 69.3 71 45.1
Gohir.A09G138500 Gossypium hirsutum HOM05D000357 ORTHO05D000242 6.2e-10 67.0 58 56.9
Gohir.D09G136100 Gossypium hirsutum HOM05D000357 ORTHO05D000242 6.2e-10 67.0 58 56.9
TWI77G0206 Tripterygium wilfordii HOM05D000357 ORTHO05D000242 6.2e-10 67.0 58 53.4
Manes.08G023800 Manihot esculenta HOM05D000357 ORTHO05D000242 8.2e-10 66.6 72 48.6
RcHm_v2.0_Chr3g0472891 Rosa chinensis HOM05D000357 ORTHO05D000242 8.2e-10 66.6 55 54.5
Carub.0005s1928 Capsella rubella HOM05D000357 ORTHO05D000242 1.1e-09 66.2 43 67.4
AL278U10010 Arabidopsis lyrata HOM05D000357 ORTHO05D014416 1.4e-09 65.9 79 46.8
Gohir.A04G064000 Gossypium hirsutum HOM05D000357 ORTHO05D000242 1.4e-09 65.9 57 54.4
Gorai.009G404700 Gossypium raimondii HOM05D000357 ORTHO05D000242 1.4e-09 65.9 57 54.4
FAN02G1082 Fragaria x ananassa HOM05D000357 ORTHO05D000242 2.4e-09 65.1 44 61.4
FAN05G0402 Fragaria x ananassa HOM05D000357 ORTHO05D000242 2.4e-09 65.1 44 61.4
FAN05G2092 Fragaria x ananassa HOM05D000357 ORTHO05D000242 2.4e-09 65.1 44 61.4
Gohir.D04G101400 Gossypium hirsutum HOM05D000357 ORTHO05D000242 2.4e-09 65.1 57 54.4
TWI74G0271 Tripterygium wilfordii HOM05D000357 ORTHO05D000242 2.4e-09 65.1 58 53.4
Gorai.006G156200 Gossypium raimondii HOM05D000357 ORTHO05D000242 3.1e-09 64.7 55 58.2
Lalb_Chr02g0155011 Lupinus albus HOM05D000357 ORTHO05D000242 3.1e-09 64.7 67 49.3
Oeu014903.1 Olea europaea HOM05D000357 ORTHO05D000242 5.3e-09 63.9 63 52.4
TWI53G1129 Tripterygium wilfordii HOM05D000357 ORTHO05D000242 5.3e-09 63.9 58 53.4
Aa31LG5G21470 Aethionema arabicum HOM05D000357 ORTHO05D000242 6.9e-09 63.5 65 50.8
CSS0001914 Camellia sinensis var. sinensis HOM05D000357 ORTHO05D000242 6.9e-09 63.5 54 55.6
MD12G1023200 Malus domestica HOM05D000357 ORTHO05D000242 6.9e-09 63.5 55 50.9
MD14G1020200 Malus domestica HOM05D000357 ORTHO05D000242 6.9e-09 63.5 55 50.9
Thecc.05G086300 Theobroma cacao HOM05D000357 ORTHO05D000242 6.9e-09 63.5 58 53.4
FvH4_6g18400 Fragaria vesca HOM05D000357 ORTHO05D000242 9.0e-09 63.2 43 60.5
FAN09G2543 Fragaria x ananassa HOM05D000357 ORTHO05D000242 9.0e-09 63.2 43 60.5
FAN14G4660 Fragaria x ananassa HOM05D000357 ORTHO05D000242 9.0e-09 63.2 43 60.5
Lalb_Chr06g0173281 Lupinus albus HOM05D000357 ORTHO05D000242 9.0e-09 63.2 44 61.4
Lj2C31T4 Lonicera japonica HOM05D000357 ORTHO05D000242 1.5e-08 62.4 62 48.4
CANSAT80G2605 Cannabis sativa HOM05D000357 ORTHO05D000242 2.0e-08 62.0 59 52.5
CDE08G0900 Ceratophyllum demersum HOM05D000357 ORTHO05D000242 2.0e-08 62.0 51 52.9
Ca_22049_v3 Cicer arietinum L. HOM05D000357 ORTHO05D000242 2.0e-08 62.0 72 43.1
Dinv09592 Davidia involucrata HOM05D000357 ORTHO05D000242 2.0e-08 62.0 52 50.0
Duzib093G0258 Durio zibethinus HOM05D000357 ORTHO05D000242 2.0e-08 62.0 56 55.4
A05p09530 Brassica napus HOM05D000357 ORTHO05D000242 2.6e-08 61.6 45 62.2
C06p24930 Brassica napus HOM05D000357 ORTHO05D014416 3.4e-08 61.2 62 53.2
Glyma.03G194000 Glycine max HOM05D000357 ORTHO05D000242 3.4e-08 61.2 49 55.1
Glyma.19G193800 Glycine max HOM05D000357 ORTHO05D000242 3.4e-08 61.2 49 55.1
SalBow3G2254 Salvia bowleyana HOM05D000357 ORTHO05D000242 3.4e-08 61.2 59 50.8
VMungo0720G0872 Vigna mungo HOM05D000357 ORTHO05D000242 3.4e-08 61.2 72 48.6
Medtr1g060380 Medicago truncatula HOM05D000357 ORTHO05D000242 4.5e-08 60.8 64 48.4
Phvul.007G228900 Phaseolus vulgaris HOM05D000357 ORTHO05D000242 4.5e-08 60.8 65 49.2
TPR.G35429 Trifolium pratense HOM05D000357 ORTHO05D000242 4.5e-08 60.8 44 59.1
COL.COLO4_29775 Corchorus olitorius HOM05D000357 ORTHO05D000242 5.8e-08 60.5 58 50.0
Gohir.A01G207300 Gossypium hirsutum HOM05D000357 ORTHO05D000242 5.8e-08 60.5 44 61.4
Gohir.D01G196600 Gossypium hirsutum HOM05D000357 ORTHO05D000242 5.8e-08 60.5 44 61.4
Gorai.002G240900 Gossypium raimondii HOM05D000357 ORTHO05D000242 5.8e-08 60.5 44 61.4
Psat6g080960 Pisum sativum HOM05D000357 ORTHO05D000242 5.8e-08 60.5 71 47.9
Sed0004982 Sechium edule HOM05D000357 ORTHO05D000242 5.8e-08 60.5 55 52.7
Atru.chr8.1571 Acer truncatum HOM05D000357 ORTHO05D000242 7.6e-08 60.1 44 59.1
CSS0044866 Camellia sinensis var. sinensis HOM05D000357 ORTHO05D000242 7.6e-08 60.1 52 50.0
Cc06_g05600 Coffea canephora HOM05D000357 ORTHO05D000242 7.6e-08 60.1 49 53.1
Duzib128G0906 Durio zibethinus HOM05D000357 ORTHO05D000242 7.6e-08 60.1 56 51.8
Phvul.001G188800 Phaseolus vulgaris HOM05D000357 ORTHO05D000242 7.6e-08 60.1 49 53.1
MELO3C024538.2 Cucumis melo HOM05D000357 ORTHO05D000242 1.0e-07 59.7 55 52.7
CsaV3_6G040620 Cucumis sativus L. HOM05D000357 ORTHO05D000242 1.0e-07 59.7 55 52.7
TAR623G1789 Trochodendron aralioides HOM05D000357 ORTHO05D000242 1.0e-07 59.7 75 41.3
Cpa.g.sc5.42 Carica papaya HOM05D000357 ORTHO05D000242 1.3e-07 59.3 69 46.4
Cc00_g18850 Coffea canephora HOM05D000357 ORTHO05D000242 1.3e-07 59.3 44 56.8
Haze_19586 Corylus avellana HOM05D000357 ORTHO05D000242 1.3e-07 59.3 39 61.5
VMungo1383G3566 Vigna mungo HOM05D000357 ORTHO05D000242 1.3e-07 59.3 49 53.1
Cfa016586 Carpinus fangiana HOM05D000357 ORTHO05D000242 1.7e-07 58.9 39 61.5
Lj5g0019420 Lotus japonicus HOM05D000357 ORTHO05D000242 1.7e-07 58.9 67 44.8
Medtr7g104320 Medicago truncatula HOM05D000357 ORTHO05D000242 1.7e-07 58.9 49 53.1
TPR.G19543 Trifolium pratense HOM05D000357 ORTHO05D014416 1.7e-07 58.9 49 53.1
CAN.G1039.11 Capsicum annuum HOM05D000357 ORTHO05D000242 2.2e-07 58.5 59 45.8
Prupe.7G113400 Prunus persica HOM05D000357 ORTHO05D000242 2.2e-07 58.5 43 58.1
HanXRQChr08g0217781 Helianthus annuus HOM05D000357 ORTHO05D000242 2.9e-07 58.2 57 45.6
PSO339G4312 Papaver somniferum HOM05D000357 ORTHO05D000242 2.9e-07 58.2 52 48.1
PSO384G3393 Papaver somniferum HOM05D000357 ORTHO05D000242 2.9e-07 58.2 52 48.1
Psat3g034360 Pisum sativum HOM05D000357 ORTHO05D000242 2.9e-07 58.2 49 53.1
Glyma.13G152916 Glycine max HOM05D000357 ORTHO05D000242 3.8e-07 57.8 44 56.8
arahy.Tifrunner.gnm1.ann1.J961PB Arachis hypogaea HOM05D000357 ORTHO05D000242 4.9e-07 57.4 49 51.0
arahy.Tifrunner.gnm1.ann1.YL5FLY Arachis hypogaea HOM05D000357 ORTHO05D000242 4.9e-07 57.4 49 51.0
Rhsim03G0101100 Rhododendron simsii HOM05D000357 ORTHO05D000242 6.5e-07 57.0 52 46.2
CDE04G2776 Ceratophyllum demersum HOM05D002333 ORTHO05D002485 8.4e-07 56.6 52 46.2
FvH4_4g02120 Fragaria vesca HOM05D000357 ORTHO05D000242 8.4e-07 56.6 44 54.5
CDE02G1496 Ceratophyllum demersum HOM05D000357 ORTHO05D000242 1.1e-06 56.2 52 46.2
ClCG04G009970 Citrullus lanatus HOM05D000357 ORTHO05D000242 1.1e-06 56.2 55 50.9
Hma1.2p1_0232F.1_g097760 Hydrangea macrophylla HOM05D000357 ORTHO05D000242 1.1e-06 56.2 55 52.7
Peaxi162Scf00173g00083 Petunia axillaris HOM05D000357 ORTHO05D000242 1.1e-06 56.2 44 54.5
Aqoxy5G00392 Aquilegia oxysepala HOM05D000357 ORTHO05D000242 1.4e-06 55.8 53 47.2
CiPaw.09G011800 Carya illinoinensis HOM05D000357 ORTHO05D000242 1.4e-06 55.8 68 48.5
Glyma.11G153700 Glycine max HOM05D000357 ORTHO05D000242 1.4e-06 55.8 44 54.5
THA.LOC104827514 Tarenaya hassleriana HOM05D000357 ORTHO05D000242 1.4e-06 55.8 36 66.7
CAN.G730.37 Capsicum annuum HOM05D000357 ORTHO05D000242 1.9e-06 55.5 44 52.3
Peaxi162Scf00852g00012 Petunia axillaris HOM05D000357 ORTHO05D014416 1.9e-06 55.5 52 50.0
Lj2P134T19 Lonicera japonica HOM05D000357 ORTHO05D000242 2.5e-06 55.1 45 55.6
Nitab4.5_0001437g0180 Nicotiana tabacum HOM05D000357 ORTHO05D000242 2.5e-06 55.1 44 52.3
Nitab4.5_0003774g0020 Nicotiana tabacum HOM05D000357 ORTHO05D000242 2.5e-06 55.1 44 52.3
Aqoxy4G02813 Aquilegia oxysepala HOM05D000357 ORTHO05D000242 3.2e-06 54.7 52 46.2
Sopen11g003070 Solanum pennellii HOM05D000357 ORTHO05D000242 3.2e-06 54.7 44 52.3
PGSC0003DMG400019467 Solanum tuberosum HOM05D000357 ORTHO05D000242 3.2e-06 54.7 44 52.3
Atru.chr3.3295 Acer truncatum HOM05D000357 ORTHO05D000242 4.2e-06 54.3 70 42.9
Aqoxy2G01236 Aquilegia oxysepala HOM05D000357 ORTHO05D000242 4.2e-06 54.3 53 45.3
Lalb_Chr19g0136581 Lupinus albus HOM05D000357 ORTHO05D000242 5.5e-06 53.9 66 43.9
Oeu009232.1 Olea europaea HOM05D000357 ORTHO05D000242 5.5e-06 53.9 43 55.8
Sopen10g032930 Solanum pennellii HOM05D000357 ORTHO05D000242 5.5e-06 53.9 62 43.5
DCAR_013379 Daucus carota HOM05D000357 ORTHO05D000242 7.1e-06 53.5 53 45.3
QL07p039417 Quercus lobata HOM05D000357 ORTHO05D000242 7.1e-06 53.5 53 49.1
PGSC0003DMG400028167 Solanum tuberosum HOM05D000357 ORTHO05D000242 9.3e-06 53.1 62 43.5


User provided reference genes

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