Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p41800 Brassica napus HOM05D005927 ORTHO05D006952 4.7e-61 237.7 118 100.0
BcaC02g09370 Brassica carinata HOM05D005927 ORTHO05D006952 8.0e-61 236.9 118 99.2
BolC4t25761H Brassica oleracea HOM05D005927 ORTHO05D006952 8.0e-61 236.9 118 99.2
BcaB02g08639 Brassica carinata HOM05D005927 ORTHO05D006952 2.3e-52 208.8 119 88.2
A04p08120 Brassica napus HOM05D005927 ORTHO05D006952 6.8e-52 207.2 120 86.7
BraA04t16501Z Brassica rapa HOM05D005927 ORTHO05D006952 6.8e-52 207.2 120 86.7
Sp7g11810 Schrenkiella parvula HOM05D005927 ORTHO05D006952 1.1e-49 199.9 119 84.9
AL7G42420 Arabidopsis lyrata HOM05D005927 ORTHO05D006952 2.0e-43 179.1 118 78.0
Carub.0007s2841 Capsella rubella HOM05D005927 ORTHO05D006952 2.6e-43 178.7 118 78.0
AT4G14010 Arabidopsis thaliana HOM05D005927 ORTHO05D006952 1.7e-42 176.0 119 78.2
Thhalv10026595m.g Eutrema salsugineum HOM05D005927 ORTHO05D006952 4.0e-36 154.8 121 68.6
CARHR220010 Cardamine hirsuta HOM05D005927 ORTHO05D006952 2.4e-28 129.0 118 57.6
Aa31LG9G3330 Aethionema arabicum HOM05D005927 ORTHO05D006952 5.8e-27 124.4 99 63.6
CARHR220020 Cardamine hirsuta HOM05D005927 ORTHO05D006952 2.4e-25 119.0 115 57.4
THA.LOC104804793 Tarenaya hassleriana HOM05D005927 ORTHO05D006952 5.1e-23 111.3 116 56.9
Potri.017G059800 Populus trichocarpa HOM05D005927 ORTHO05D006952 9.6e-22 107.1 118 46.6
Sabra17G0053700 Salix brachista HOM05D005927 ORTHO05D006952 4.0e-20 101.7 95 54.7
CiPaw.01G115600 Carya illinoinensis HOM05D005927 ORTHO05D006952 1.2e-19 100.1 126 48.4
Solyc09g092235.1 Solanum lycopersicum HOM05D005927 ORTHO05D006952 1.2e-19 100.1 118 45.8
Manes.05G201886 Manihot esculenta HOM05D005927 ORTHO05D006952 2.6e-19 99.0 90 56.7
Sopen09g035160 Solanum pennellii HOM05D005927 ORTHO05D006952 3.4e-19 98.6 118 45.8
arahy.Tifrunner.gnm1.ann1.N45PRE Arachis hypogaea HOM05D005927 ORTHO05D006952 1.3e-18 96.7 87 58.6
Glyma.08G108200 Glycine max HOM05D005927 ORTHO05D006952 2.9e-18 95.5 92 54.3
Thecc.04G193700 Theobroma cacao HOM05D005927 ORTHO05D006952 2.9e-18 95.5 104 51.9
Aa31LG8G10360 Aethionema arabicum HOM05D005927 ORTHO05D006952 4.9e-18 94.7 116 50.9
FAN12G2699 Fragaria x ananassa HOM05D005927 ORTHO05D006952 4.9e-18 94.7 116 48.3
MELO3C006773.2 Cucumis melo HOM05D005927 ORTHO05D006952 6.4e-18 94.4 120 45.0
Glyma.05G151400 Glycine max HOM05D005927 ORTHO05D006952 6.4e-18 94.4 92 53.3
TPR.G11873 Trifolium pratense HOM05D005927 ORTHO05D006952 6.4e-18 94.4 106 51.9
FvH4_4g13190 Fragaria vesca HOM05D005927 ORTHO05D006952 1.1e-17 93.6 116 47.4
VMungo0251G3792 Vigna mungo HOM05D005927 ORTHO05D006952 1.1e-17 93.6 89 56.2
Hma1.2p1_2624F.1_g325620 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 1.9e-17 92.8 108 48.1
Lj4g0008619 Lotus japonicus HOM05D005927 ORTHO05D006952 2.4e-17 92.4 115 48.7
MD04G1018100 Malus domestica HOM05D005927 ORTHO05D006952 2.4e-17 92.4 117 45.3
Ca_17999_v3 Cicer arietinum L. HOM05D000324 ORTHO05D004875 3.2e-17 92.0 89 53.9
Hma1.2p1_0349F.1_g131980 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 3.2e-17 92.0 108 48.1
RcHm_v2.0_Chr4g0413341 Rosa chinensis HOM05D005927 ORTHO05D006952 3.2e-17 92.0 108 47.2
QL06p026881 Quercus lobata HOM05D005927 ORTHO05D006952 4.2e-17 91.7 109 48.6
Aqoxy2G03917 Aquilegia oxysepala HOM05D005927 ORTHO05D006952 9.3e-17 90.5 113 46.0
FAN17G1175 Fragaria x ananassa HOM05D005927 ORTHO05D006952 9.3e-17 90.5 109 46.8
arahy.Tifrunner.gnm1.ann1.DI9ALX Arachis hypogaea HOM05D005927 ORTHO05D006952 1.2e-16 90.1 87 57.5
A03p43360 Brassica napus HOM05D005927 ORTHO05D006952 1.6e-16 89.7 77 58.4
CsaV3_3G015740 Cucumis sativus L. HOM05D005927 ORTHO05D006952 1.6e-16 89.7 93 49.5
Phvul.003G051400 Phaseolus vulgaris HOM05D005927 ORTHO05D006952 1.6e-16 89.7 124 41.9
Sed0010469 Sechium edule HOM05D005927 ORTHO05D006952 1.6e-16 89.7 120 48.3
Psat7g076040 Pisum sativum HOM05D005927 ORTHO05D006952 2.7e-16 89.0 105 49.5
FAN07G0035 Fragaria x ananassa HOM05D005927 ORTHO05D006952 3.5e-16 88.6 116 45.7
Gohir.D10G137100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 3.5e-16 88.6 111 48.6
Gorai.011G152200 Gossypium raimondii HOM05D005927 ORTHO05D006952 3.5e-16 88.6 111 48.6
PGSC0003DMG400026439 Solanum tuberosum HOM05D005927 ORTHO05D006952 3.5e-16 88.6 67 61.2
CSS0025530 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 4.6e-16 88.2 127 44.9
Hma1.2p1_0349F.1_g132010 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 4.6e-16 88.2 102 47.1
Hma1.2p1_2624F.1_g325626 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 4.6e-16 88.2 102 47.1
CSS0030768 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 6.0e-16 87.8 87 52.9
Medtr8g083150 Medicago truncatula HOM05D005927 ORTHO05D006952 7.9e-16 87.4 103 49.5
Nn1g08157 Nelumbo nucifera HOM05D005927 ORTHO05D006952 1.0e-15 87.0 110 50.9
Sp3g21500 Schrenkiella parvula HOM05D005927 ORTHO05D006952 1.0e-15 87.0 87 54.0
Ah.13g077890 Amaranthus hybridus HOM05D005927 ORTHO05D006952 1.3e-15 86.7 98 50.0
COL.COLO4_05438 Corchorus olitorius HOM05D005927 ORTHO05D006952 1.3e-15 86.7 87 55.2
Potri.001G321300 Populus trichocarpa HOM05D005927 ORTHO05D006952 1.3e-15 86.7 111 43.2
arahy.Tifrunner.gnm1.ann1.6R0Q3T Arachis hypogaea HOM05D005927 ORTHO05D006952 1.8e-15 86.3 93 50.5
Hma1.2p1_1201F.1_g266720 Hydrangea macrophylla HOM05D005927 ORTHO05D006952 2.3e-15 85.9 115 45.2
CSS0000209 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 3.0e-15 85.5 84 52.4
Cpa.g.sc157.40 Carica papaya HOM05D005927 ORTHO05D006952 3.0e-15 85.5 101 48.5
Gohir.A10G129100 Gossypium hirsutum HOM05D005927 ORTHO05D006952 3.9e-15 85.1 111 47.7
CSS0010844 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 5.1e-15 84.7 84 51.2
CSS0029764 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 5.1e-15 84.7 87 54.0
CSS0015614 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 6.7e-15 84.3 84 51.2
Rhsim09G0061200 Rhododendron simsii HOM05D005927 ORTHO05D006952 1.5e-14 83.2 115 44.3
CSS0027848 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 1.9e-14 82.8 87 51.7
Thecc.04G193600 Theobroma cacao HOM05D005927 ORTHO05D006952 2.5e-14 82.4 97 47.4
SalBow3G2584 Salvia bowleyana HOM05D005927 ORTHO05D006952 1.3e-13 80.1 124 41.1
Eucgr.H02655 Eucalyptus grandis HOM05D005927 ORTHO05D006952 1.6e-13 79.7 120 40.8
CSS0021083 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 2.1e-13 79.3 85 48.2
Prupe.1G167100 Prunus persica HOM05D005927 ORTHO05D006952 2.1e-13 79.3 120 40.8
TWI09G0897 Tripterygium wilfordii HOM05D005927 ORTHO05D006952 2.1e-13 79.3 99 47.5
Lalb_Chr25g0289221 Lupinus albus HOM05D005927 ORTHO05D006952 2.8e-13 79.0 108 43.5
CSS0047969 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 4.8e-13 78.2 87 50.6
Nitab4.5_0019370g0010 Nicotiana tabacum HOM05D005927 ORTHO05D006952 4.8e-13 78.2 61 62.3
CiPaw.02G063500 Carya illinoinensis HOM05D005927 ORTHO05D006952 6.2e-13 77.8 111 44.1
MSTRG.14058 Avicennia marina HOM05D005927 ORTHO05D006952 8.1e-13 77.4 131 39.7
CiPaw.02G064100 Carya illinoinensis HOM05D005927 ORTHO05D006952 1.1e-12 77.0 111 43.2
CANSAT78G2028 Cannabis sativa HOM05D005927 ORTHO05D006952 2.4e-12 75.9 85 51.8
Migut.N00426 Erythranthe guttata HOM05D005927 ORTHO05D006952 2.4e-12 75.9 123 39.8
COL.COLO4_05437 Corchorus olitorius HOM05D005927 ORTHO05D006952 3.1e-12 75.5 116 41.4
PGR083G0422 Punica granatum HOM05D005927 ORTHO05D006952 3.1e-12 75.5 116 42.2
PGR083G1024 Punica granatum HOM05D005927 ORTHO05D006952 3.1e-12 75.5 116 42.2
BraA03t13474Z Brassica rapa HOM05D005927 ORTHO05D006952 4.0e-12 75.1 64 59.4
CSS0031533 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 4.0e-12 75.1 67 56.7
EL10Ac3g07444 Beta vulgaris HOM05D005927 ORTHO05D006952 5.3e-12 74.7 87 49.4
BcaB03g14615 Brassica carinata HOM05D005927 ORTHO05D006952 6.9e-12 74.3 68 55.9
Ciclev10006252m.g Citrus clementina HOM05D005927 ORTHO05D006952 6.9e-12 74.3 121 40.5
SGA_v2.0_scaffold7G04055 Striga asiatica HOM05D005927 ORTHO05D006952 6.9e-12 74.3 88 45.5
Nn1g08158 Nelumbo nucifera HOM05D005927 ORTHO05D006952 1.2e-11 73.6 80 52.5
AUR62020874 Chenopodium quinoa HOM05D005927 ORTHO05D006952 1.5e-11 73.2 82 52.4
Cfa010561 Carpinus fangiana HOM05D003411 ORTHO05D003914 2.0e-11 72.8 73 53.4
Lsat_1_v5_gn_2_47681 Lactuca sativa HOM05D005927 ORTHO05D006952 2.6e-11 72.4 113 43.4
Ciclev10006262m.g Citrus clementina HOM05D005927 ORTHO05D006952 3.4e-11 72.0 90 43.3
PGR083G0017 Punica granatum HOM05D005927 ORTHO05D006952 4.5e-11 71.6 110 40.0
Duzib151G0391 Durio zibethinus HOM05D005927 ORTHO05D006952 5.8e-11 71.2 80 47.5
CSS0046414 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 7.6e-11 70.9 82 50.0
DCAR_026663 Daucus carota HOM05D005927 ORTHO05D006952 2.2e-10 69.3 56 62.5
Sed0016502 Sechium edule HOM05D005927 ORTHO05D006952 2.9e-10 68.9 113 39.8
AUR62018545 Chenopodium quinoa HOM05D005927 ORTHO05D006952 3.8e-10 68.6 73 53.4
DCAR_001205 Daucus carota HOM05D001053 ORTHO05D008021 3.8e-10 68.6 62 51.6
Duzib268G0459 Durio zibethinus HOM05D005927 ORTHO05D006952 6.4e-10 67.8 81 48.1
CiPaw.01G115500 Carya illinoinensis HOM05D005927 ORTHO05D006952 2.4e-09 65.9 107 37.4
Atru.chr4.1553 Acer truncatum HOM05D005927 ORTHO05D006952 3.2e-09 65.5 110 39.1
CSS0014727 Camellia sinensis var. sinensis HOM05D005927 ORTHO05D006952 7.1e-09 64.3 50 54.0
ECA238G2825 Erigeron canadensis HOM05D005927 ORTHO05D006952 7.1e-09 64.3 110 40.0
Oeu056432.1 Olea europaea HOM05D005927 ORTHO05D006952 2.7e-08 62.4 120 33.3
Manes.05G202960 Manihot esculenta HOM05D005927 ORTHO05D006952 3.5e-08 62.0 114 34.2
Potri.001G321500 Populus trichocarpa HOM05D005927 ORTHO05D006952 7.9e-08 60.8 107 36.4
Sopen01g029860 Solanum pennellii HOM05D000668 ORTHO05D000516 1.0e-07 60.5 93 43.0
CAN.G185.13 Capsicum annuum HOM05D000668 ORTHO05D000516 1.3e-07 60.1 132 34.8
Solyc01g067900.3 Solanum lycopersicum HOM05D000668 ORTHO05D000516 1.8e-07 59.7 93 44.1
Potri.017G059900 Populus trichocarpa HOM05D005927 ORTHO05D006952 3.0e-07 58.9 109 38.5
unitig_21.g20554 Utricularia gibba HOM05D005927 ORTHO05D006952 3.0e-07 58.9 84 38.1
Prupe.1G167200 Prunus persica HOM05D005927 ORTHO05D006952 6.7e-07 57.8 112 40.2
Carub.0007s2586 Capsella rubella HOM05D000668 ORTHO05D000516 1.5e-06 56.6 119 40.3
Gohir.A09G207300 Gossypium hirsutum HOM05D005927 ORTHO05D006952 1.9e-06 56.2 84 41.7
EL10Ac3g06595 Beta vulgaris HOM05D000668 ORTHO05D000516 2.5e-06 55.8 123 38.2
Eucgr.K03354 Eucalyptus grandis HOM05D000668 ORTHO05D000516 5.6e-06 54.7 85 45.9
MD12G1213600 Malus domestica HOM05D000668 ORTHO05D000516 5.6e-06 54.7 88 42.0
Gohir.D08G225600 Gossypium hirsutum HOM05D000668 ORTHO05D000516 7.4e-06 54.3 85 45.9
Gorai.004G239600 Gossypium raimondii HOM05D000668 ORTHO05D000516 7.4e-06 54.3 85 45.9
AUR62015303 Chenopodium quinoa HOM05D000668 ORTHO05D000516 9.6e-06 53.9 86 38.4
AUR62032002 Chenopodium quinoa HOM05D000668 ORTHO05D000516 9.6e-06 53.9 88 43.2


User provided reference genes

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