Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 1.2e-109 399.8 198 100.0
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 1.2e-109 399.8 198 100.0
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.9e-107 392.5 198 97.5
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 3.3e-107 391.7 198 98.0
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 5.2e-105 384.4 198 94.9
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 6.8e-105 384.0 219 90.0
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 3.4e-104 381.7 198 93.9
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 7.5e-104 380.6 216 89.8
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.2e-101 373.2 198 91.9
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 2.1e-101 372.5 198 91.9
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 2.7e-101 372.1 198 91.4
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 3.5e-101 371.7 198 91.9
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 4.6e-101 371.3 198 91.4
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 7.8e-101 370.5 198 90.9
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 8.6e-100 367.1 198 92.4
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 1.1e-99 366.7 198 90.4
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 5.6e-99 364.4 198 87.9
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 3.6e-98 361.7 198 87.9
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 2.0e-96 355.9 198 87.4
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 8.4e-87 323.9 180 88.3
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 8.4e-87 323.9 198 76.3
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 6.6e-84 314.3 198 75.8
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 2.1e-82 309.3 198 72.7
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 2.8e-82 308.9 198 73.2
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 1.8e-81 306.2 198 72.2
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 5.3e-81 304.7 198 72.7
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 5.3e-81 304.7 198 71.2
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 9.0e-81 303.9 198 73.2
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 1.2e-80 303.5 198 72.2
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.5e-80 303.1 198 72.2
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 4.4e-80 301.6 198 71.7
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 70.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 70.7
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 9.9e-80 300.4 198 70.7
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 71.7
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 71.2
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.7e-79 299.7 198 73.2
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.9e-79 298.9 198 69.7
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 2.9e-79 298.9 198 69.7
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 68.7
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 6.4e-79 297.7 198 70.2
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 6.4e-79 297.7 198 70.7
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 1.1e-78 297.0 198 69.7
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 1.4e-78 296.6 198 70.7
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 1.4e-78 296.6 198 68.2
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 1.4e-78 296.6 198 70.2
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 1.4e-78 296.6 198 70.7
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.9e-78 296.2 198 69.7
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 1.9e-78 296.2 198 70.7
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 3.2e-78 295.4 198 69.7
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 7.1e-78 294.3 199 69.3
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 67.7
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 71.2
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 9.3e-78 293.9 198 71.2
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 1.6e-77 293.1 199 70.4
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 69.7
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 2.7e-77 292.4 198 69.2
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 2.7e-77 292.4 200 71.0
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 3.5e-77 292.0 198 69.7
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 7.9e-77 290.8 198 68.7
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.0e-76 290.4 198 67.7
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.0e-76 290.4 198 69.2
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 1.0e-76 290.4 198 69.2
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 67.7
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 67.2
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 69.7
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.1e-75 287.0 198 68.2
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 67.2
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 67.2
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 2.5e-75 285.8 198 67.2
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 5.6e-75 284.6 198 63.6
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 9.6e-75 283.9 198 66.7
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 1.3e-74 283.5 200 65.5
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 1.6e-74 283.1 198 66.7
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 1.6e-74 283.1 198 64.6
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 4.8e-74 281.6 198 65.7
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.4e-73 280.0 198 64.1
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 1.4e-73 280.0 198 66.2
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 4.0e-73 278.5 198 65.7
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.0e-72 276.2 206 64.1
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 3.4e-72 275.4 234 59.0
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 4.5e-72 275.0 234 58.5
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 5.8e-72 274.6 198 66.2
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 5.8e-72 274.6 206 63.6
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 2.2e-71 272.7 145 91.0
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 2.9e-71 272.3 216 61.6
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 2.4e-70 269.2 198 61.6
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 3.2e-70 268.9 253 54.5
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 4.2e-70 268.5 241 56.8
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 7.1e-70 267.7 233 57.1
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 7.1e-70 267.7 198 64.6
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 9.3e-70 267.3 198 64.1
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 9.3e-70 267.3 170 72.9
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 2.1e-69 266.2 236 55.5
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 1.3e-68 263.5 198 60.1
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 1.9e-67 259.6 176 67.6
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 4.3e-67 258.5 171 68.4
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 5.6e-67 258.1 173 67.6
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.1e-65 252.3 198 59.6
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 4.0e-65 251.9 170 66.5
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 7.6e-64 247.7 198 59.1
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 7.6e-64 247.7 198 60.1
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 6.5e-63 244.6 188 63.3
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 3.2e-62 242.3 155 70.3
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.8e-60 236.5 198 60.1
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.8e-60 236.5 198 54.5
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 2.3e-60 236.1 160 68.8
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 4.3e-59 231.9 191 57.6
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 4.1e-57 225.3 167 67.7
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.2e-56 223.8 198 57.1
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 9.3e-54 214.2 198 49.0
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 9.3e-54 214.2 133 69.9
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 1.8e-52 209.9 198 48.0
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 2.5e-51 206.1 135 71.1
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 3.1e-49 199.1 196 47.4
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 1.2e-48 197.2 197 46.2
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 5.5e-46 188.3 120 69.2
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 4.3e-43 178.7 130 61.5
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 3.7e-42 175.6 115 67.0
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 1.1e-41 174.1 185 51.9
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 1.2e-40 170.6 143 55.9
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 2.6e-40 169.5 130 62.3
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 5.0e-39 165.2 160 47.5
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 4.2e-38 162.2 115 63.5
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 2.7e-37 159.5 110 73.6
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 7.4e-35 151.4 142 49.3
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 1.2e-32 144.1 143 47.6
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.6e-32 143.7 115 52.2
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.0e-32 143.3 115 52.2
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 7.7e-32 141.4 87 64.4
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 1.8e-28 130.2 121 54.5
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 5.2e-28 128.6 145 41.4
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 8.2e-26 121.3 82 74.4
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 1.2e-24 117.5 77 77.9
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 7.7e-24 114.8 77 77.9
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 8.5e-23 111.3 77 75.3
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 4.2e-22 109.0 77 71.4
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 9.4e-22 107.8 77 70.1
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 9.4e-22 107.8 77 70.1
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 2.7e-21 106.3 77 70.1
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 6.1e-21 105.1 75 69.3
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 8.0e-21 104.8 60 70.0
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.6e-19 99.8 77 62.3
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 4.4e-19 99.0 83 60.2
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 1.3e-18 97.4 56 82.1
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 1.1e-17 94.4 99 46.5
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 1.1e-17 94.4 57 66.7
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 1.8e-17 93.6 56 78.6
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 2.4e-17 93.2 69 69.6
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 2.4e-17 93.2 72 66.7
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.1e-17 92.4 75 62.7
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 4.5e-16 89.0 54 72.2
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 1.0e-15 87.8 191 29.3
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 2.9e-15 86.3 145 39.3
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 8.5e-15 84.7 61 65.6
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 4.7e-13 79.0 64 57.8
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 8.0e-13 78.2 119 37.0
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 4.4e-11 72.4 52 59.6
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 7.5e-11 71.6 54 48.1
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 1.3e-10 70.9 63 47.6
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 4.1e-09 65.9 55 52.7
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.0e-08 63.5 53 54.7
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 4.5e-08 62.4 46 67.4
Lsat_1_v5_gn_4_104380 Lactuca sativa HOM05D001722 ORTHO05D048310 9.5e-06 54.7 33 57.6


User provided reference genes

Program Settings