Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 2.3e-51 205.3 107 100.0
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 2.3e-51 205.3 107 100.0
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 2.3e-51 205.3 107 100.0
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 7.1e-48 193.7 107 95.3
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 2.1e-47 192.2 107 94.4
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 4.6e-47 191.0 107 94.4
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 7.1e-32 140.6 107 68.2
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.2e-31 139.8 109 70.6
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 9.6e-29 130.2 107 64.5
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.8e-28 127.9 108 66.7
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 5.4e-24 114.4 110 57.3
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.1e-23 112.5 107 57.9
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.1e-16 90.1 109 51.4
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.4e-16 89.7 100 52.0
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 4.2e-16 88.2 109 50.5
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.2e-16 88.2 109 47.7
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 5.5e-16 87.8 109 50.5
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.2e-15 86.7 104 47.1
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 3.5e-15 85.1 111 49.5
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.5e-15 85.1 100 51.0
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 6.0e-15 84.3 109 48.6
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 6.0e-15 84.3 99 50.5
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 7.9e-15 84.0 109 48.6
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.0e-14 83.6 106 44.3
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 3.0e-14 82.0 112 49.1
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 3.0e-14 82.0 91 56.0
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 3.9e-14 81.6 105 47.6
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 5.1e-14 81.3 100 43.0
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 8.7e-14 80.5 113 45.1
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 1.1e-13 80.1 115 46.1
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.5e-13 79.7 111 45.9
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 1.9e-13 79.3 95 46.3
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 4.3e-13 78.2 105 47.6
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 7.4e-13 77.4 110 41.8
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 9.6e-13 77.0 103 47.6
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 1.3e-12 76.6 105 47.6
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 2.1e-12 75.9 116 43.1
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 2.1e-12 75.9 107 43.0
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 2.1e-12 75.9 103 43.7
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 2.8e-12 75.5 94 47.9
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 4.8e-12 74.7 104 44.2
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 4.8e-12 74.7 104 44.2
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 4.8e-12 74.7 102 43.1
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 6.2e-12 74.3 116 41.4
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 6.2e-12 74.3 104 41.3
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 8.2e-12 73.9 114 43.9
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 1.1e-11 73.6 112 42.9
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.1e-11 73.6 98 43.9
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 1.4e-11 73.2 102 45.1
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.4e-11 73.2 102 42.2
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 1.8e-11 72.8 102 46.1
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 2.4e-11 72.4 96 43.8
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 2.4e-11 72.4 103 46.6
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.4e-11 72.4 89 51.7
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 4.0e-11 71.6 97 45.4
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 4.0e-11 71.6 103 44.7
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 4.0e-11 71.6 100 40.0
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 4.0e-11 71.6 89 44.9
Aa31LG9G2850 Aethionema arabicum HOM05D003940 ORTHO05D004461 5.3e-11 71.2 107 50.5
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 5.3e-11 71.2 109 45.0
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 5.3e-11 71.2 109 41.3
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 6.9e-11 70.9 100 40.0
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 6.9e-11 70.9 103 43.7
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 6.9e-11 70.9 115 41.7
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 6.9e-11 70.9 112 41.1
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 6.9e-11 70.9 104 46.2
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 9.0e-11 70.5 90 47.8
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 9.0e-11 70.5 111 45.0
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.2e-10 70.1 103 42.7
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 1.2e-10 70.1 91 45.1
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 1.2e-10 70.1 103 42.7
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.5e-10 69.7 118 38.1
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.5e-10 69.7 113 38.9
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.5e-10 69.7 110 40.9
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 1.5e-10 69.7 110 42.7
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.5e-10 69.7 111 45.9
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.5e-10 69.7 111 45.9
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.0e-10 69.3 118 38.1
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.6e-10 68.9 111 38.7
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.6e-10 68.9 111 38.7
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 3.4e-10 68.6 103 42.7
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.4e-10 68.6 104 44.2
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 4.5e-10 68.2 90 47.8
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 4.5e-10 68.2 105 39.0
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 5.8e-10 67.8 88 50.0
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 5.8e-10 67.8 108 39.8
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 5.8e-10 67.8 102 45.1
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 1.0e-09 67.0 103 42.7
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.0e-09 67.0 108 39.8
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 1.7e-09 66.2 102 45.1
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.7e-09 66.2 114 43.0
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 1.7e-09 66.2 108 42.6
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.7e-09 66.2 94 42.6
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 2.2e-09 65.9 103 39.8
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 2.2e-09 65.9 108 41.7
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 2.2e-09 65.9 104 42.3
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 2.9e-09 65.5 86 47.7
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.9e-09 65.5 117 39.3
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 2.9e-09 65.5 101 39.6
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 2.9e-09 65.5 107 39.3
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.9e-09 65.5 90 50.0
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.8e-09 65.1 100 41.0
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.8e-09 65.1 117 39.3
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 4.9e-09 64.7 120 38.3
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 4.9e-09 64.7 91 45.1
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 6.5e-09 64.3 103 44.7
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 6.5e-09 64.3 88 47.7
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 8.4e-09 63.9 120 38.3
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 8.4e-09 63.9 105 43.8
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.1e-08 63.5 99 45.5
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.1e-08 63.5 111 37.8
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 1.1e-08 63.5 120 37.5
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 1.1e-08 63.5 102 40.2
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.1e-08 63.5 84 50.0
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 1.1e-08 63.5 93 43.0
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.4e-08 63.2 107 43.0
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 1.9e-08 62.8 98 38.8
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 1.9e-08 62.8 103 43.7
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.5e-08 62.4 105 44.8
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 2.5e-08 62.4 98 42.9
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 2.5e-08 62.4 108 40.7
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 3.2e-08 62.0 95 43.2
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 3.2e-08 62.0 93 40.9
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 4.2e-08 61.6 93 40.9
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.5e-08 61.2 105 38.1
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.5e-08 61.2 105 38.1
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.5e-08 61.2 108 41.7
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 5.5e-08 61.2 94 40.4
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 5.5e-08 61.2 108 40.7
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 7.1e-08 60.8 85 45.9
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 7.1e-08 60.8 85 45.9
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.1e-08 60.8 108 42.6
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.1e-08 60.8 105 38.1
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 9.3e-08 60.5 105 43.8
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 9.3e-08 60.5 105 42.9
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 9.3e-08 60.5 110 37.3
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 9.3e-08 60.5 105 39.0
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 9.3e-08 60.5 99 40.4
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.2e-07 60.1 112 43.8
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 1.2e-07 60.1 66 53.0
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.6e-07 59.7 105 43.8
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 1.6e-07 59.7 105 44.8
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.6e-07 59.7 105 42.9
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.1e-07 59.3 105 42.9
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.1e-07 59.3 108 38.9
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 2.7e-07 58.9 77 48.1
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 3.5e-07 58.5 115 34.8
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 3.5e-07 58.5 87 44.8
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 4.6e-07 58.2 93 41.9
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 4.6e-07 58.2 92 40.2
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 7.9e-07 57.4 103 36.9
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 2.3e-06 55.8 100 40.0
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.9e-06 55.1 132 34.1
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 3.9e-06 55.1 132 34.1
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 3.9e-06 55.1 96 38.5
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 5.1e-06 54.7 104 36.5
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 5.1e-06 54.7 99 40.4
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 6.7e-06 54.3 95 42.1
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 6.7e-06 54.3 95 42.1
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 6.7e-06 54.3 95 42.1


User provided reference genes

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