Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p40910 Brassica napus HOM05D005145 ORTHO05D032934 4.7e-38 160.6 76 100.0
BcaB01g00448 Brassica carinata HOM05D005145 ORTHO05D006062 6.8e-13 77.0 44 81.8
Sp5g10230 Schrenkiella parvula HOM05D005145 ORTHO05D006062 6.8e-13 77.0 44 81.8
AL3G35760 Arabidopsis lyrata HOM05D005145 ORTHO05D006062 1.2e-12 76.3 44 81.8
Thhalv10010511m.g Eutrema salsugineum HOM05D005145 ORTHO05D006062 1.5e-12 75.9 49 73.5
BcaNung06088 Brassica carinata HOM05D005145 ORTHO05D006062 2.0e-12 75.5 42 83.3
C08p27330 Brassica napus HOM05D005145 ORTHO05D006062 2.0e-12 75.5 42 83.3
BolC8t50350H Brassica oleracea HOM05D005145 ORTHO05D006062 3.4e-12 74.7 44 79.5
Carub.0003s2169 Capsella rubella HOM05D005145 ORTHO05D006062 3.4e-12 74.7 44 79.5
CARHR161760 Cardamine hirsuta HOM05D005145 ORTHO05D006062 4.4e-12 74.3 44 77.3
BcaC02g09986 Brassica carinata HOM05D005145 ORTHO05D032934 9.9e-12 73.2 46 78.3
BcaC06g33379 Brassica carinata HOM05D005145 ORTHO05D006062 9.9e-12 73.2 46 78.3
A09p45140 Brassica napus HOM05D005145 ORTHO05D006062 1.3e-11 72.8 44 75.0
BraA09t39975Z Brassica rapa HOM05D005145 ORTHO05D006062 1.3e-11 72.8 44 75.0
C07p46760 Brassica napus HOM05D005145 ORTHO05D006062 2.9e-11 71.6 46 76.1
BolC7t45194H Brassica oleracea HOM05D005145 ORTHO05D006062 2.9e-11 71.6 46 76.1
AT3G21640 Arabidopsis thaliana HOM05D005145 ORTHO05D006062 3.8e-11 71.2 44 75.0
A03p48650 Brassica napus HOM05D005145 ORTHO05D006062 1.1e-10 69.7 40 82.5
BraA03t13968Z Brassica rapa HOM05D005145 ORTHO05D006062 1.1e-10 69.7 40 82.5
QL04p008103 Quercus lobata HOM05D005145 ORTHO05D006062 1.1e-10 69.7 45 71.1
QL04p008544 Quercus lobata HOM05D005145 ORTHO05D006062 1.1e-10 69.7 45 71.1
TWI09G1580 Tripterygium wilfordii HOM05D005145 ORTHO05D006062 1.1e-10 69.7 44 75.0
Aa31LG10G7130 Aethionema arabicum HOM05D005145 ORTHO05D006062 1.4e-10 69.3 44 72.7
Sc23g0005930 Simmondsia chinensis HOM05D005145 ORTHO05D006062 3.2e-10 68.2 45 68.9
MD02G1308300 Malus domestica HOM05D005145 ORTHO05D006062 5.4e-10 67.4 45 66.7
DCAR_029683 Daucus carota HOM05D005145 ORTHO05D006062 7.1e-10 67.0 45 66.7
Sed0004407 Sechium edule HOM05D005145 ORTHO05D006062 7.1e-10 67.0 44 68.2
Sc11g0009070 Simmondsia chinensis HOM05D005145 ORTHO05D006062 7.1e-10 67.0 45 68.9
GSVIVG01032135001 Vitis vinifera HOM05D005145 ORTHO05D006062 7.1e-10 67.0 45 68.9
CiPaw.14G001300 Carya illinoinensis HOM05D005145 ORTHO05D006062 1.2e-09 66.2 45 66.7
Ciclev10031893m.g Citrus clementina HOM05D005145 ORTHO05D006062 1.2e-09 66.2 45 66.7
Cc02_g28150 Coffea canephora HOM05D005145 ORTHO05D006062 1.2e-09 66.2 44 68.2
Sed0001165 Sechium edule HOM05D005145 ORTHO05D006062 1.2e-09 66.2 44 65.9
BcaC06g33022 Brassica carinata HOM05D005145 ORTHO05D006062 1.6e-09 65.9 39 79.5
Ah.13g067830 Amaranthus hybridus HOM05D005145 ORTHO05D006062 2.1e-09 65.5 44 68.2
Dinv09339 Davidia involucrata HOM05D005145 ORTHO05D006062 2.1e-09 65.5 45 66.7
Lj7C573G7 Lonicera japonica HOM05D005145 ORTHO05D006062 2.1e-09 65.5 42 73.8
Rhsim07G0056700 Rhododendron simsii HOM05D000961 ORTHO05D000841 3.5e-09 64.7 45 68.9
Haze_03177 Corylus avellana HOM05D005145 ORTHO05D006062 4.6e-09 64.3 45 64.4
PGR083G1973 Punica granatum HOM05D005145 ORTHO05D006062 4.6e-09 64.3 44 68.2
Eucgr.G03367 Eucalyptus grandis HOM05D005145 ORTHO05D006062 6.0e-09 63.9 45 64.4
Thecc.01G408700 Theobroma cacao HOM05D005145 ORTHO05D006062 6.0e-09 63.9 45 64.4
vmacro13679 Vaccinium macrocarpon HOM05D005145 ORTHO05D006062 7.8e-09 63.5 45 64.4
EL10Ac2g04343 Beta vulgaris HOM05D005145 ORTHO05D006062 1.3e-08 62.8 44 63.6
Nitab4.5_0000707g0300 Nicotiana tabacum HOM05D005145 ORTHO05D006062 1.3e-08 62.8 53 56.6
SalBow1G5123 Salvia bowleyana HOM05D005145 ORTHO05D006062 1.3e-08 62.8 44 68.2
SGA_v2.0_scaffold4G02519 Striga asiatica HOM05D005145 ORTHO05D006062 1.3e-08 62.8 44 65.9
COL.COLO4_04870 Corchorus olitorius HOM05D005145 ORTHO05D006062 1.7e-08 62.4 45 64.4
Potri.009G059200 Populus trichocarpa HOM05D005145 ORTHO05D006062 1.7e-08 62.4 44 61.4
AUR62009396 Chenopodium quinoa HOM05D005145 ORTHO05D006062 2.3e-08 62.0 48 60.4
Sabra09G0043600 Salix brachista HOM05D005145 ORTHO05D006062 2.3e-08 62.0 44 61.4
Hund05940 Selenicereus undatus HOM05D005145 ORTHO05D006062 2.3e-08 62.0 45 64.4
Gorai.001G069200 Gossypium raimondii HOM05D005145 ORTHO05D006062 3.0e-08 61.6 45 60.0
THA.LOC104801977 Tarenaya hassleriana HOM05D005145 ORTHO05D006062 3.0e-08 61.6 44 63.6
Cpa.g.sc125.17 Carica papaya HOM05D005145 ORTHO05D006062 3.9e-08 61.2 45 60.0
MD07G1015900 Malus domestica HOM05D005145 ORTHO05D006062 3.9e-08 61.2 53 56.6
MSTRG.17025 Avicennia marina HOM05D005145 ORTHO05D006062 5.1e-08 60.8 44 63.6
Nitab4.5_0002918g0060 Nicotiana tabacum HOM05D005145 ORTHO05D006062 5.1e-08 60.8 53 56.6
Solyc01g087470.3 Solanum lycopersicum HOM05D005145 ORTHO05D006062 5.1e-08 60.8 44 65.9
Sopen01g034400 Solanum pennellii HOM05D005145 ORTHO05D006062 5.1e-08 60.8 44 65.9
PGSC0003DMG400006860 Solanum tuberosum HOM05D005145 ORTHO05D006062 5.1e-08 60.8 44 65.9
CSS0031676 Camellia sinensis var. sinensis HOM05D005145 ORTHO05D006062 6.6e-08 60.5 45 62.2
Cfa010794 Carpinus fangiana HOM05D005145 ORTHO05D006062 6.6e-08 60.5 45 62.2
Sabra16G0162500 Salix brachista HOM05D005145 ORTHO05D006062 6.6e-08 60.5 42 61.9
ECA248G1413 Erigeron canadensis HOM05D005145 ORTHO05D006062 8.7e-08 60.1 45 60.0
Glyma.12G008300 Glycine max HOM05D005145 ORTHO05D006062 8.7e-08 60.1 46 65.2
TAR636G0099 Trochodendron aralioides HOM05D005145 ORTHO05D006062 8.7e-08 60.1 45 60.0
CsaV3_3G032060 Cucumis sativus L. HOM05D005145 ORTHO05D006062 1.1e-07 59.7 44 63.6
MBI15_g03642_MAGBIO Magnolia biondii HOM05D005145 ORTHO05D006062 1.1e-07 59.7 45 60.0
CAN.G219.41 Capsicum annuum HOM05D005145 ORTHO05D006062 1.5e-07 59.3 44 63.6
Os11g0148300 Oryza sativa ssp. japonica HOM05D005145 ORTHO05D006062 1.5e-07 59.3 41 65.9
Phvul.011G012900 Phaseolus vulgaris HOM05D005145 ORTHO05D006062 1.5e-07 59.3 46 63.0
HPP92_009711 Vanilla planifolia HOM05D005145 ORTHO05D006062 1.5e-07 59.3 45 62.2
Atru.chr11.2602 Acer truncatum HOM05D005145 ORTHO05D006062 1.9e-07 58.9 45 60.0
arahy.Tifrunner.gnm1.ann1.HLL15Q Arachis hypogaea HOM05D005145 ORTHO05D006062 1.9e-07 58.9 45 60.0
Duzib138G1043 Durio zibethinus HOM05D005145 ORTHO05D006062 1.9e-07 58.9 41 68.3
Glyma.09G228200 Glycine max HOM05D005145 ORTHO05D006062 1.9e-07 58.9 46 63.0
MD02G1308400 Malus domestica HOM05D005145 ORTHO05D006062 1.9e-07 58.9 44 61.4
Nn7g36253 Nelumbo nucifera HOM05D005145 ORTHO05D006062 1.9e-07 58.9 45 62.2
Manes.07G007200 Manihot esculenta HOM05D005145 ORTHO05D006062 2.5e-07 58.5 45 57.8
Potri.001G264400 Populus trichocarpa HOM05D005145 ORTHO05D006062 2.5e-07 58.5 44 56.8
arahy.Tifrunner.gnm1.ann1.TWX3XF Arachis hypogaea HOM05D005145 ORTHO05D006062 3.3e-07 58.2 42 66.7
PSO478G3750 Papaver somniferum HOM05D005145 ORTHO05D006062 3.3e-07 58.2 48 50.0
TAR369G0045 Trochodendron aralioides HOM05D005145 ORTHO05D006062 3.3e-07 58.2 45 55.6
unitig_749.g14327 Utricularia gibba HOM05D005145 ORTHO05D006062 4.3e-07 57.8 44 59.1
Lsat_1_v5_gn_1_105761 Lactuca sativa HOM05D005145 ORTHO05D006062 5.6e-07 57.4 42 61.9
Peaxi162Scf00744g00356 Petunia axillaris HOM05D005145 ORTHO05D006062 5.6e-07 57.4 44 61.4
RcHm_v2.0_Chr1g0317011 Rosa chinensis HOM05D005145 ORTHO05D006062 7.3e-07 57.0 44 59.1
ClCG10G012290 Citrullus lanatus HOM05D005145 ORTHO05D006062 9.6e-07 56.6 44 61.4
Lj3g0020185 Lotus japonicus HOM05D005145 ORTHO05D006062 9.6e-07 56.6 47 59.6
Os12g0145500 Oryza sativa ssp. japonica HOM05D005145 ORTHO05D006062 9.6e-07 56.6 41 58.5
VMungo1127G0627 Vigna mungo HOM05D005145 ORTHO05D006062 9.6e-07 56.6 46 60.9
Prupe.2G017100 Prunus persica HOM05D005145 ORTHO05D006062 1.2e-06 56.2 45 60.0
Zm00001eb092870 Zea mays HOM05D005145 ORTHO05D006062 1.2e-06 56.2 45 55.6
Actinidia19403 Actinidia chinensis HOM05D005145 ORTHO05D006062 2.1e-06 55.5 39 66.7
Oeu014585.1 Olea europaea HOM05D005145 ORTHO05D006062 2.1e-06 55.5 44 56.8
Migut.B01287 Erythranthe guttata HOM05D005145 ORTHO05D006062 2.8e-06 55.1 45 60.0
Medtr4g039430 Medicago truncatula HOM05D005145 ORTHO05D006062 2.8e-06 55.1 40 67.5
Psat7g183320 Pisum sativum HOM05D005145 ORTHO05D006062 2.8e-06 55.1 40 67.5
Ca_19569_v3 Cicer arietinum L. HOM05D005145 ORTHO05D006062 3.6e-06 54.7 40 67.5
TPR.G30176 Trifolium pratense HOM05D005145 ORTHO05D006062 3.6e-06 54.7 40 67.5
ATR0332G093 Amborella trichopoda HOM05D005145 ORTHO05D006062 8.1e-06 53.5 42 59.5


User provided reference genes

Program Settings