Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 0.0e+00 1183.7 618 100.0
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 0.0e+00 1166.8 618 99.0
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 0.0e+00 1136.7 603 99.2
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 1.0e-276 956.4 651 82.5
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 2.2e-274 948.7 652 81.9
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 2.7e-269 931.8 663 80.2
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 1.7e-234 816.2 699 71.1
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 4.7e-213 745.0 698 64.9
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 9.0e-204 714.1 699 63.1
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 1.0e-199 700.7 695 62.4
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 5.1e-199 698.4 627 68.7
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 7.4e-198 694.5 688 62.9
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 1.6e-197 693.3 651 67.1
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 1.6e-197 693.3 651 67.1
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 4.8e-197 691.8 652 67.3
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 1.5e-195 686.8 652 66.7
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 2.2e-186 656.4 636 65.7
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 3.6e-160 569.3 682 54.8
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 3.1e-95 353.6 677 43.4
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 4.8e-56 223.4 705 33.9
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 5.3e-55 219.9 616 36.0
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 1.1e-52 212.2 611 34.0
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 3.2e-52 210.7 703 31.9
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 7.2e-52 209.5 583 35.7
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 9.4e-52 209.1 708 32.1
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 1.2e-51 208.8 674 31.9
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 6.1e-51 206.5 582 33.0
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 7.9e-51 206.1 674 31.9
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 8.8e-50 202.6 708 32.8
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 2.0e-49 201.4 596 35.2
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 4.4e-49 200.3 614 32.6
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 3.7e-48 197.2 597 32.3
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 3.7e-48 197.2 564 35.3
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 4.8e-48 196.8 597 33.7
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.1e-47 195.7 610 32.6
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.1e-47 195.7 676 31.8
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 4.1e-47 193.7 601 32.6
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 1.2e-46 192.2 610 33.4
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 1.0e-45 189.1 582 33.5
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 3.8e-45 187.2 704 31.2
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 3.8e-45 187.2 571 32.9
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 5.5e-44 183.3 606 30.9
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 1.6e-43 181.8 571 31.5
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 1.6e-43 181.8 578 32.0
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 1.4e-42 178.7 708 30.8
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 2.3e-42 177.9 533 34.3
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 1.7e-40 171.8 542 33.6
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 3.7e-40 170.6 592 30.6
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 3.7e-40 170.6 588 32.7
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 1.4e-39 168.7 786 28.5
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 1.4e-39 168.7 557 33.4
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 3.1e-39 167.5 576 32.8
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 3.1e-39 167.5 559 31.1
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 1.2e-38 165.6 540 31.7
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 1.6e-38 165.2 538 32.5
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 2.0e-38 164.9 545 32.8
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 2.0e-38 164.9 580 32.8
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 4.5e-38 163.7 540 30.9
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 7.7e-38 162.9 548 30.8
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 1.0e-37 162.5 601 31.8
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 1.3e-37 162.2 577 32.4
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.9e-37 161.0 571 31.5
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 5.0e-37 160.2 638 30.1
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 1.5e-36 158.7 550 33.3
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 3.2e-36 157.5 574 30.3
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.2e-36 157.5 548 30.7
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 3.2e-36 157.5 560 32.0
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 4.2e-36 157.1 694 28.8
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 9.4e-36 156.0 536 32.8
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 1.2e-35 155.6 633 29.9
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 1.2e-35 155.6 533 30.8
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 1.2e-35 155.6 538 31.0
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 1.6e-35 155.2 551 31.9
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 8.0e-35 152.9 323 36.8
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.2e-33 149.1 615 29.8
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 4.4e-33 147.1 684 27.5
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 5.7e-33 146.7 557 29.6
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 1.3e-32 145.6 521 28.6
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 1.7e-32 145.2 514 33.7
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.7e-32 145.2 457 31.3
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.2e-32 144.8 548 30.3
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 2.2e-32 144.8 573 29.1
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 1.4e-31 142.1 800 26.9
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 2.4e-31 141.4 573 29.7
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 3.1e-31 141.0 530 30.4
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 5.4e-31 140.2 624 28.5
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 7.0e-31 139.8 536 29.5
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 7.0e-31 139.8 563 29.7
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 9.1e-31 139.4 513 31.8
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.0e-29 136.0 544 29.4
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 1.3e-29 135.6 652 29.0
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 5.0e-29 133.7 453 32.0
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 5.0e-29 133.7 534 31.5
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 6.5e-29 133.3 515 29.5
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 3.6e-27 127.5 550 29.3
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 8.0e-27 126.3 294 37.8
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.8e-26 125.2 551 29.4
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 1.8e-26 125.2 495 30.9
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.5e-25 122.1 501 29.7
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.6e-25 121.3 641 26.7
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 2.6e-25 121.3 496 29.4
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 5.7e-25 120.2 587 27.6
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 3.7e-24 117.5 309 36.6
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 6.3e-24 116.7 529 29.7
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 1.8e-23 115.2 505 28.1
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.1e-23 114.0 617 26.3
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 5.0e-21 107.1 567 29.6
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 5.5e-20 103.6 373 29.8
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 2.1e-19 101.7 377 29.7
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 3.6e-19 100.9 458 28.4
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 2.3e-18 98.2 533 26.5
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 3.0e-18 97.8 539 26.3
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 1.3e-16 92.4 360 28.6
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 1.1e-15 89.4 475 28.4
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 4.1e-15 87.4 269 32.0
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 2.0e-14 85.1 205 37.6
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 2.0e-14 85.1 551 26.3
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 3.9e-13 80.9 420 25.5
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 3.3e-12 77.8 83 50.6
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 1.2e-09 69.3 186 32.8
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 1.7e-08 65.5 214 34.1
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 2.4e-07 61.6 131 41.2
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 2.0e-06 58.5 253 25.3


User provided reference genes

Program Settings