Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 1.1e-90 336.7 167 100.0
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 3.4e-81 305.1 175 90.3
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 6.4e-80 300.8 175 89.1
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 2.1e-75 285.8 147 98.0
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 2.1e-75 285.8 147 98.0
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 2.1e-75 285.8 147 98.0
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 2.1e-75 285.8 147 98.0
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 1.8e-74 282.7 207 75.4
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 6.9e-74 280.8 147 95.9
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 2.6e-73 278.9 147 95.2
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 5.8e-73 277.7 147 94.6
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 5.8e-73 277.7 147 95.2
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 4.9e-72 274.6 147 94.6
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 4.9e-72 274.6 147 94.6
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 6.4e-72 274.2 147 91.8
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 1.1e-71 273.5 147 93.9
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 2.4e-71 272.3 147 92.5
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 7.1e-71 270.8 147 90.5
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 9.3e-71 270.4 147 91.2
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 9.3e-71 270.4 147 90.5
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 1.2e-70 270.0 147 91.2
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 1.2e-70 270.0 147 90.5
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 2.1e-70 269.2 147 90.5
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 2.1e-70 269.2 147 89.8
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 2.7e-70 268.9 147 90.5
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 2.7e-70 268.9 147 90.5
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 3.5e-70 268.5 147 91.8
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 3.5e-70 268.5 147 90.5
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 4.6e-70 268.1 146 91.1
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 4.6e-70 268.1 146 91.1
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 6.0e-70 267.7 147 90.5
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 7.8e-70 267.3 147 89.8
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 7.8e-70 267.3 147 89.8
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 7.8e-70 267.3 147 90.5
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 7.8e-70 267.3 147 90.5
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 1.0e-69 266.9 147 89.8
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 1.0e-69 266.9 147 89.8
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 1.3e-69 266.5 147 88.4
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 1.3e-69 266.5 147 89.8
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 1.7e-69 266.2 145 90.3
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 1.7e-69 266.2 147 89.8
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 1.7e-69 266.2 147 89.1
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.7e-69 266.2 147 89.1
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 1.7e-69 266.2 147 89.8
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 2.3e-69 265.8 147 89.1
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 2.3e-69 265.8 147 89.1
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.3e-69 265.8 147 89.1
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 3.0e-69 265.4 147 88.4
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 3.0e-69 265.4 147 89.1
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 3.0e-69 265.4 147 89.8
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 3.0e-69 265.4 147 89.1
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 3.0e-69 265.4 147 87.8
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 3.0e-69 265.4 145 89.7
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 3.0e-69 265.4 147 88.4
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 3.9e-69 265.0 147 89.8
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 3.9e-69 265.0 147 89.1
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 5.1e-69 264.6 147 89.8
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 5.1e-69 264.6 147 88.4
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 6.6e-69 264.2 147 89.1
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 6.6e-69 264.2 147 89.1
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 6.6e-69 264.2 147 89.1
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 8.7e-69 263.8 147 89.1
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 8.7e-69 263.8 147 88.4
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 8.7e-69 263.8 147 89.8
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 8.7e-69 263.8 147 87.8
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 1.1e-68 263.5 147 87.8
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 1.1e-68 263.5 147 87.8
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 1.1e-68 263.5 147 89.1
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.1e-68 263.5 147 88.4
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.1e-68 263.5 145 90.3
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 1.1e-68 263.5 147 89.1
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 1.1e-68 263.5 146 89.0
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 1.1e-68 263.5 147 89.8
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.5e-68 263.1 147 87.8
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 1.5e-68 263.1 147 88.4
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 1.9e-68 262.7 147 89.1
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 1.9e-68 262.7 147 89.1
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 1.9e-68 262.7 147 89.1
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 1.9e-68 262.7 147 88.4
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 2.5e-68 262.3 147 89.1
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 3.3e-68 261.9 145 89.7
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 4.3e-68 261.5 147 87.8
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 4.3e-68 261.5 147 88.4
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 4.3e-68 261.5 145 89.0
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 4.3e-68 261.5 147 88.4
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 5.6e-68 261.2 145 89.0
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 9.6e-68 260.4 147 87.8
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 1.3e-67 260.0 147 87.8
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 1.3e-67 260.0 144 88.9
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 1.6e-67 259.6 147 88.4
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 2.1e-67 259.2 147 85.7
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 2.1e-67 259.2 158 82.9
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 3.6e-67 258.5 145 87.6
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 4.8e-67 258.1 147 86.4
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 6.2e-67 257.7 147 87.1
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 6.2e-67 257.7 147 87.1
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 6.2e-67 257.7 143 89.5
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 6.2e-67 257.7 144 88.2
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 8.1e-67 257.3 150 84.7
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 1.4e-66 256.5 147 89.1
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 1.4e-66 256.5 142 88.7
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 2.4e-66 255.8 157 82.8
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 4.0e-66 255.0 145 86.2
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 1.2e-65 253.4 147 84.4
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 2.0e-65 252.7 145 84.8
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 1.1e-63 246.9 145 81.4
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 7.1e-63 244.2 145 82.8
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 7.1e-63 244.2 146 81.5
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 1.1e-60 236.9 119 99.2
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 1.1e-60 236.9 211 62.1
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 9.6e-60 233.8 120 95.0
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 1.1e-58 230.3 147 78.9
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 7.6e-57 224.2 147 77.6
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.2e-55 218.8 123 87.0
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 1.0e-53 213.8 145 72.4
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.9e-52 209.5 120 84.2
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.3e-52 208.8 120 85.8
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 1.4e-50 203.4 148 69.6
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 1.5e-49 199.9 141 73.8
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-46 190.3 156 65.4
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 2.1e-46 189.5 114 84.2
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 8.8e-37 157.5 167 54.5
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.7e-35 153.3 120 66.7
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 4.5e-33 145.2 137 55.5
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 2.5e-31 139.4 76 90.8
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.2e-25 120.6 59 96.6
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.3e-16 90.5 76 60.5
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 2.9e-16 89.4 45 91.1
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 5.0e-16 88.6 49 83.7
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 1.1e-15 87.4 46 93.5
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 8.0e-14 81.3 85 54.1
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.0e-13 80.9 43 88.4
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 2.7e-06 56.2 27 96.3


User provided reference genes

Program Settings