Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p39860 Brassica napus HOM05D038259 ORTHO05D013253 6.5e-58 227.3 121 100.0
BcaC02g09190 Brassica carinata HOM05D000732 ORTHO05D013253 1.6e-56 222.6 119 99.2
BcaC08g42882 Brassica carinata HOM05D000732 ORTHO05D027335 2.0e-19 99.4 55 92.7
C06p00980 Brassica napus HOM05D000732 ORTHO05D027335 1.7e-18 96.3 55 90.9
BraA01t03419Z Brassica rapa HOM05D000732 ORTHO05D027335 2.3e-18 95.9 55 89.1
BcaC02g09354 Brassica carinata HOM05D000732 ORTHO05D013253 1.1e-17 93.6 51 94.1
BraA09t39596Z Brassica rapa HOM05D000732 ORTHO05D007225 6.2e-16 87.8 69 66.7
BcaC05g26291 Brassica carinata HOM05D000732 ORTHO05D007225 1.1e-15 87.0 69 66.7
C05p22970 Brassica napus HOM05D000732 ORTHO05D007225 1.1e-15 87.0 69 66.7
BolC5t30996H Brassica oleracea HOM05D000732 ORTHO05D007225 1.1e-15 87.0 69 66.7
BcaB03g11954 Brassica carinata HOM05D000732 ORTHO05D007225 1.4e-15 86.7 69 66.7
BcaC07g39214 Brassica carinata HOM05D000732 ORTHO05D007225 1.4e-15 86.7 69 66.7
A09p41030 Brassica napus HOM05D000732 ORTHO05D007225 1.4e-15 86.7 69 65.2
BolC6t35234H Brassica oleracea HOM05D000732 ORTHO05D027335 2.3e-15 85.9 49 89.8
AT1G23790 Arabidopsis thaliana HOM05D000732 ORTHO05D007225 8.9e-15 84.0 70 62.9
C08p22100 Brassica napus HOM05D000732 ORTHO05D007225 8.9e-15 84.0 69 63.8
BolC8t49855H Brassica oleracea HOM05D000732 ORTHO05D007225 8.9e-15 84.0 69 63.8
Carub.0001s2330 Capsella rubella HOM05D000732 ORTHO05D007225 8.9e-15 84.0 70 62.9
A08p28020 Brassica napus HOM05D000732 ORTHO05D007225 1.5e-14 83.2 69 63.8
BraA08t34732Z Brassica rapa HOM05D000732 ORTHO05D007225 1.5e-14 83.2 69 63.8
AL1G37550 Arabidopsis lyrata HOM05D000732 ORTHO05D007225 3.4e-14 82.0 81 54.3
Thhalv10007309m.g Eutrema salsugineum HOM05D000732 ORTHO05D007225 1.3e-13 80.1 69 62.3
CARHR024210 Cardamine hirsuta HOM05D000732 ORTHO05D007225 2.9e-13 79.0 69 60.9
Aa31LG7G7670 Aethionema arabicum HOM05D000732 ORTHO05D007225 2.1e-11 72.8 76 51.3
AL2G29650 Arabidopsis lyrata HOM05D000732 ORTHO05D007225 4.6e-11 71.6 69 52.2
Carub.0002s1703 Capsella rubella HOM05D000732 ORTHO05D007225 4.6e-11 71.6 87 47.1
Sp5g25460 Schrenkiella parvula HOM05D000732 ORTHO05D007225 4.6e-11 71.6 69 53.6
AT1G70340 Arabidopsis thaliana HOM05D000732 ORTHO05D007225 2.3e-10 69.3 79 45.6
CARHR063520 Cardamine hirsuta HOM05D000732 ORTHO05D007225 3.0e-10 68.9 69 52.2
Aa31LG4G10600 Aethionema arabicum HOM05D000732 ORTHO05D007225 1.5e-09 66.6 68 51.5
Dinv24859 Davidia involucrata HOM05D000732 ORTHO05D007225 1.9e-09 66.2 59 55.9
THA.LOC104808945 Tarenaya hassleriana HOM05D000732 ORTHO05D007225 3.3e-09 65.5 61 55.7
Nn4g22799 Nelumbo nucifera HOM05D000732 ORTHO05D007225 5.6e-09 64.7 79 44.3
Haze_12177 Corylus avellana HOM05D000732 ORTHO05D007225 7.3e-09 64.3 94 41.5
Ah.02g129920 Amaranthus hybridus HOM05D000732 ORTHO05D007225 1.2e-08 63.5 89 39.3
Cpa.g.sc69.30 Carica papaya HOM05D000732 ORTHO05D007225 1.2e-08 63.5 59 55.9
AUR62005377 Chenopodium quinoa HOM05D000732 ORTHO05D007225 1.2e-08 63.5 82 45.1
AUR62014040 Chenopodium quinoa HOM05D000732 ORTHO05D007225 1.2e-08 63.5 82 45.1
Ciclev10031068m.g Citrus clementina HOM05D000732 ORTHO05D007225 1.2e-08 63.5 59 55.9
EL10Ac6g13672 Beta vulgaris HOM05D000732 ORTHO05D007225 1.6e-08 63.2 70 50.0
GSVIVG01020241001 Vitis vinifera HOM05D000732 ORTHO05D007225 1.6e-08 63.2 69 50.7
Gohir.D02G162800 Gossypium hirsutum HOM05D000732 ORTHO05D007225 2.1e-08 62.8 86 43.0
Gorai.005G182800 Gossypium raimondii HOM05D000732 ORTHO05D007225 2.1e-08 62.8 86 43.0
Cfa009143 Carpinus fangiana HOM05D000732 ORTHO05D007225 2.8e-08 62.4 85 45.9
DCAR_031102 Daucus carota HOM05D000732 ORTHO05D007225 2.8e-08 62.4 69 50.7
Eucgr.B03344 Eucalyptus grandis HOM05D000732 ORTHO05D007225 2.8e-08 62.4 59 54.2
QL08p001512 Quercus lobata HOM05D000732 ORTHO05D007225 2.8e-08 62.4 79 43.0
Actinidia13509 Actinidia chinensis HOM05D000732 ORTHO05D007225 3.6e-08 62.0 80 41.2
Actinidia15046 Actinidia chinensis HOM05D000732 ORTHO05D007225 4.7e-08 61.6 82 40.2
FAN17G2219 Fragaria x ananassa HOM05D000732 ORTHO05D007225 4.7e-08 61.6 59 52.5
Manes.12G029000 Manihot esculenta HOM05D000732 ORTHO05D007225 6.2e-08 61.2 78 43.6
VMungo1215G1082 Vigna mungo HOM05D000732 ORTHO05D007225 6.2e-08 61.2 70 48.6
arahy.Tifrunner.gnm1.ann1.V0668Y Arachis hypogaea HOM05D000732 ORTHO05D007225 1.4e-07 60.1 96 38.5
FvH4_4g34410 Fragaria vesca HOM05D000732 ORTHO05D007225 1.4e-07 60.1 59 50.8
FAN07G1798 Fragaria x ananassa HOM05D000732 ORTHO05D007225 1.4e-07 60.1 59 50.8
FAN12G2269 Fragaria x ananassa HOM05D000732 ORTHO05D007225 1.4e-07 60.1 59 50.8
FAN22G0662 Fragaria x ananassa HOM05D000732 ORTHO05D007225 1.4e-07 60.1 59 50.8
RcHm_v2.0_Chr4g0443831 Rosa chinensis HOM05D000732 ORTHO05D007225 1.4e-07 60.1 69 46.4
TWI75G0496 Tripterygium wilfordii HOM05D000732 ORTHO05D007225 1.4e-07 60.1 99 40.4
TAR629G1031 Trochodendron aralioides HOM05D000732 ORTHO05D007225 1.4e-07 60.1 81 42.0
Dinv15302 Davidia involucrata HOM05D000732 ORTHO05D007225 1.8e-07 59.7 87 39.1
arahy.Tifrunner.gnm1.ann1.S6CLIJ Arachis hypogaea HOM05D000732 ORTHO05D007225 2.3e-07 59.3 96 37.5
Ca_04598_v3 Cicer arietinum L. HOM05D000732 ORTHO05D007225 2.3e-07 59.3 99 38.4
Phvul.002G071800 Phaseolus vulgaris HOM05D000732 ORTHO05D007225 2.3e-07 59.3 70 47.1
CSS0045437 Camellia sinensis var. sinensis HOM05D000732 ORTHO05D007225 4.0e-07 58.5 78 42.3
Gohir.A03G140000 Gossypium hirsutum HOM05D000732 ORTHO05D007225 4.0e-07 58.5 59 50.8
Hund25346 Selenicereus undatus HOM05D000732 ORTHO05D007225 4.0e-07 58.5 69 46.4
Thecc.02G248500 Theobroma cacao HOM05D000732 ORTHO05D007225 4.0e-07 58.5 69 46.4
Medtr5g034370 Medicago truncatula HOM05D000732 ORTHO05D007225 5.2e-07 58.2 72 45.8
Oeu056733.2 Olea europaea HOM05D000732 ORTHO05D007225 5.2e-07 58.2 59 49.2
TPR.G13569 Trifolium pratense HOM05D000732 ORTHO05D007225 5.2e-07 58.2 72 45.8
Glyma.01G031300 Glycine max HOM05D000732 ORTHO05D007225 6.8e-07 57.8 70 45.7
HanXRQChr08g0208801 Helianthus annuus HOM05D000732 ORTHO05D007225 6.8e-07 57.8 59 52.5
Lj2g0021682 Lotus japonicus HOM05D000732 ORTHO05D007225 6.8e-07 57.8 70 47.1
Lalb_Chr05g0216901 Lupinus albus HOM05D000732 ORTHO05D007225 6.8e-07 57.8 89 39.3
SGA_v2.0_scaffold165G38244 Striga asiatica HOM05D000732 ORTHO05D007225 6.8e-07 57.8 105 40.0
Migut.L01414 Erythranthe guttata HOM05D000732 ORTHO05D007225 8.9e-07 57.4 69 46.4
Duzib268G1676 Durio zibethinus HOM05D000732 ORTHO05D007225 1.2e-06 57.0 81 43.2
Sabra08G0145800 Salix brachista HOM05D000732 ORTHO05D007225 1.2e-06 57.0 99 36.4
Sed0004489 Sechium edule HOM05D000732 ORTHO05D007225 1.2e-06 57.0 59 50.8
TWI36G1131 Tripterygium wilfordii HOM05D000732 ORTHO05D007225 1.2e-06 57.0 69 46.4
CiPaw.05G150800 Carya illinoinensis HOM05D000732 ORTHO05D007225 1.5e-06 56.6 78 39.7
Glyma.02G034500 Glycine max HOM05D000732 ORTHO05D007225 1.5e-06 56.6 70 45.7
Lsat_1_v5_gn_8_157120 Lactuca sativa HOM05D000732 ORTHO05D007225 2.0e-06 56.2 80 40.0
Psat2g106200 Pisum sativum HOM05D000732 ORTHO05D007225 2.0e-06 56.2 65 49.2
Potri.010G038600 Populus trichocarpa HOM05D000732 ORTHO05D007225 2.0e-06 56.2 55 50.9
TAR371G0352 Trochodendron aralioides HOM05D000732 ORTHO05D007225 2.0e-06 56.2 59 49.2
Cc11_g14660 Coffea canephora HOM05D000732 ORTHO05D007225 2.6e-06 55.8 69 42.0
Hma1.2p1_0867F.1_g230180 Hydrangea macrophylla HOM05D000732 ORTHO05D007225 2.6e-06 55.8 59 54.2
MD16G1092400 Malus domestica HOM05D000732 ORTHO05D007225 2.6e-06 55.8 103 32.0
Duzib248G1152 Durio zibethinus HOM05D000732 ORTHO05D007225 3.4e-06 55.5 69 44.9
BolC2t11299H Brassica oleracea HOM05D038259 ORTHO05D040081 4.4e-06 55.1 45 73.3
PGR102G0434 Punica granatum HOM05D000732 ORTHO05D007225 4.4e-06 55.1 59 47.5
ATR0730G107 Amborella trichopoda HOM05D000732 ORTHO05D007225 5.8e-06 54.7 71 40.8
MSTRG.7899 Avicennia marina HOM05D000732 ORTHO05D007225 5.8e-06 54.7 85 40.0
C02p52150 Brassica napus HOM05D038259 ORTHO05D040081 5.8e-06 54.7 49 69.4
COL.COLO4_36966 Corchorus olitorius HOM05D000732 ORTHO05D007225 7.6e-06 54.3 69 42.0
Rhsim12G0120000 Rhododendron simsii HOM05D000732 ORTHO05D007225 7.6e-06 54.3 69 40.6
vmacro16252 Vaccinium macrocarpon HOM05D000732 ORTHO05D007225 7.6e-06 54.3 81 38.3
CANSAT01G2807 Cannabis sativa HOM05D000732 ORTHO05D007225 9.9e-06 53.9 59 47.5
SalBow2G2423 Salvia bowleyana HOM05D000732 ORTHO05D007225 9.9e-06 53.9 69 42.0
TAR680G0005 Trochodendron aralioides HOM05D000732 ORTHO05D007225 9.9e-06 53.9 90 34.4
TAR680G0006 Trochodendron aralioides HOM05D000732 ORTHO05D007225 9.9e-06 53.9 90 34.4


User provided reference genes

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