Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p39620 Brassica napus HOM05D004916 ORTHO05D006147 1.2e-103 379.8 192 100.0
BNapus_Darmor_BZH_scaffold_296p00020 Brassica napus HOM05D004916 ORTHO05D006147 4.7e-103 377.9 192 99.5
C04p00870 Brassica napus HOM05D004916 ORTHO05D006147 1.5e-96 356.3 192 96.4
BolC4t25528H Brassica oleracea HOM05D004916 ORTHO05D006147 7.1e-91 337.4 170 100.0
BolC4t21725H Brassica oleracea HOM05D004916 ORTHO05D006147 6.9e-86 320.9 170 96.5
BcaC02g09022 Brassica carinata HOM05D004916 ORTHO05D006147 3.1e-78 295.4 152 99.3
BcaC02g12602 Brassica carinata HOM05D004916 ORTHO05D006147 4.0e-78 295.0 152 98.7
BcaC02g12821 Brassica carinata HOM05D004916 ORTHO05D006147 1.2e-69 266.9 182 82.4
BcaC02g12625 Brassica carinata HOM05D004916 ORTHO05D006147 1.1e-59 233.8 184 74.5
C04p01040 Brassica napus HOM05D004916 ORTHO05D006147 2.5e-59 232.6 184 73.9
BolC4t21757H Brassica oleracea HOM05D004916 ORTHO05D006147 2.5e-59 232.6 184 73.9
A05p00890 Brassica napus HOM05D004916 ORTHO05D006147 6.7e-57 224.6 184 73.4
BraA05t19090Z Brassica rapa HOM05D004916 ORTHO05D006147 1.5e-56 223.4 184 72.8
A03p25790 Brassica napus HOM05D004916 ORTHO05D006147 3.3e-56 222.2 191 70.2
BraA03t11793Z Brassica rapa HOM05D004916 ORTHO05D006147 1.7e-55 219.9 191 69.6
BcaC01g05053 Brassica carinata HOM05D004916 ORTHO05D006147 4.1e-54 215.3 190 70.5
C03p30740 Brassica napus HOM05D004916 ORTHO05D006147 4.1e-54 215.3 190 70.5
BolC3t15423H Brassica oleracea HOM05D004916 ORTHO05D006147 4.1e-54 215.3 190 70.5
Thhalv10001588m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 2.0e-53 213.0 194 68.6
BcaB01g03195 Brassica carinata HOM05D004916 ORTHO05D006147 5.1e-49 198.4 183 66.7
Carub.0004s2967 Capsella rubella HOM05D004916 ORTHO05D006147 4.4e-48 195.3 196 64.8
CARHR142290 Cardamine hirsuta HOM05D004916 ORTHO05D006147 5.9e-45 184.9 188 61.7
AL4G46410 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 5.5e-43 178.3 195 59.5
BcaB01g03196 Brassica carinata HOM05D004916 ORTHO05D006147 1.8e-41 173.3 187 62.6
AT2G46940 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 2.8e-39 166.0 201 58.7
A09p54150 Brassica napus HOM05D004916 ORTHO05D006147 1.8e-25 120.2 187 46.5
CARHR172410 Cardamine hirsuta HOM05D004916 ORTHO05D006147 2.0e-24 116.7 163 50.9
Sp5g01300 Schrenkiella parvula HOM05D004916 ORTHO05D006147 5.7e-24 115.2 204 45.1
Thhalv10006193m.g Eutrema salsugineum HOM05D004916 ORTHO05D006147 7.5e-24 114.8 196 44.9
BraA09t40829Z Brassica rapa HOM05D004916 ORTHO05D006147 3.7e-23 112.5 170 47.1
C08p37030 Brassica napus HOM05D004916 ORTHO05D006147 8.3e-23 111.3 171 48.5
Carub.0005s2882 Capsella rubella HOM05D004916 ORTHO05D006147 8.3e-23 111.3 192 45.8
AT3G62070 Arabidopsis thaliana HOM05D004916 ORTHO05D006147 1.1e-22 110.9 167 49.1
BolC8t51280H Brassica oleracea HOM05D004916 ORTHO05D006147 1.1e-22 110.9 173 47.4
THA.LOC104827649 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 1.4e-22 110.5 209 43.5
AL5G44750 Arabidopsis lyrata HOM05D004916 ORTHO05D006147 1.8e-22 110.2 169 50.3
Aa31LG10G16040 Aethionema arabicum HOM05D004916 ORTHO05D006147 1.6e-18 97.1 173 42.2
BcaC07g40699 Brassica carinata HOM05D004916 ORTHO05D006147 2.0e-16 90.1 176 42.6
Aa31LG1G28300 Aethionema arabicum HOM05D004916 ORTHO05D006147 1.1e-14 84.3 193 38.9
Phvul.001G219100 Phaseolus vulgaris HOM05D004916 ORTHO05D006147 7.8e-13 78.2 200 37.0
Ciclev10021551m.g Citrus clementina HOM05D004916 ORTHO05D006147 3.3e-11 72.8 224 34.4
Duzib138G0475 Durio zibethinus HOM05D004916 ORTHO05D006147 3.3e-11 72.8 222 33.8
Lj1g0011620 Lotus japonicus HOM05D004916 ORTHO05D006147 3.3e-11 72.8 212 33.5
Manes.01G235900 Manihot esculenta HOM05D004916 ORTHO05D006147 3.3e-11 72.8 194 36.6
Glyma.19G222300 Glycine max HOM05D004916 ORTHO05D006147 5.6e-11 72.0 187 35.3
Lalb_Chr18g0046341 Lupinus albus HOM05D004916 ORTHO05D006147 7.3e-11 71.6 208 31.7
DCAR_005711 Daucus carota HOM05D004916 ORTHO05D006147 9.5e-11 71.2 203 32.5
Gohir.A12G119000 Gossypium hirsutum HOM05D004916 ORTHO05D006147 1.2e-10 70.9 194 33.5
Gohir.D12G122800 Gossypium hirsutum HOM05D004916 ORTHO05D006147 1.6e-10 70.5 189 34.4
Gorai.008G133600 Gossypium raimondii HOM05D004916 ORTHO05D006147 1.6e-10 70.5 189 34.4
Lj5g0005115 Lotus japonicus HOM05D004916 ORTHO05D006147 1.6e-10 70.5 190 33.2
Manes.05G007300 Manihot esculenta HOM05D004916 ORTHO05D006147 1.6e-10 70.5 217 35.5
VMungo1383G1740 Vigna mungo HOM05D004916 ORTHO05D006147 2.1e-10 70.1 197 35.0
Glyma.03G225300 Glycine max HOM05D004916 ORTHO05D006147 6.1e-10 68.6 188 33.0
Sabra02G0148800 Salix brachista HOM05D004916 ORTHO05D006147 1.8e-09 67.0 207 35.3
Eucgr.A00995 Eucalyptus grandis HOM05D004916 ORTHO05D006147 5.2e-09 65.5 204 32.8
Gohir.A11G105700 Gossypium hirsutum HOM05D004916 ORTHO05D006147 8.9e-09 64.7 202 33.2
arahy.Tifrunner.gnm1.ann1.Y1689U Arachis hypogaea HOM05D004916 ORTHO05D006147 1.2e-08 64.3 164 33.5
PGR042G3904 Punica granatum HOM05D004916 ORTHO05D006147 1.2e-08 64.3 197 36.5
Ca_09253_v3 Cicer arietinum L. HOM05D004916 ORTHO05D006147 2.6e-08 63.2 206 33.5
Nn4g25313 Nelumbo nucifera HOM05D004916 ORTHO05D006147 2.6e-08 63.2 71 50.7
Thecc.01G327100 Theobroma cacao HOM05D004916 ORTHO05D006147 2.6e-08 63.2 210 32.4
TAR636G0286 Trochodendron aralioides HOM05D004916 ORTHO05D006147 2.6e-08 63.2 193 31.6
COL.COLO4_23106 Corchorus olitorius HOM05D004916 ORTHO05D006147 4.4e-08 62.4 235 32.3
Potri.002G185700 Populus trichocarpa HOM05D004916 ORTHO05D006147 5.8e-08 62.0 220 32.3
FAN26G2369 Fragaria x ananassa HOM05D004916 ORTHO05D006147 7.5e-08 61.6 83 43.4
FAN28G2008 Fragaria x ananassa HOM05D004916 ORTHO05D006147 7.5e-08 61.6 83 43.4
Potri.014G111000 Populus trichocarpa HOM05D004916 ORTHO05D006147 7.5e-08 61.6 219 32.0
FAN23G1874 Fragaria x ananassa HOM05D004916 ORTHO05D006147 9.8e-08 61.2 84 42.9
Gorai.007G118300 Gossypium raimondii HOM05D004916 ORTHO05D006147 9.8e-08 61.2 220 31.8
Haze_05162 Corylus avellana HOM05D004916 ORTHO05D006147 1.3e-07 60.8 241 29.9
FvH4_1g26130 Fragaria vesca HOM05D004916 ORTHO05D006147 1.3e-07 60.8 83 43.4
FAN19G1053 Fragaria x ananassa HOM05D004916 ORTHO05D006147 1.3e-07 60.8 83 43.4
Prupe.3G001400 Prunus persica HOM05D004916 ORTHO05D006147 1.3e-07 60.8 232 29.7
PSO210G3767 Papaver somniferum HOM05D004916 ORTHO05D006147 1.7e-07 60.5 210 31.4
TPR.G8393 Trifolium pratense HOM05D004916 ORTHO05D006147 1.7e-07 60.5 200 33.5
Cfa004923 Carpinus fangiana HOM05D004916 ORTHO05D006147 2.2e-07 60.1 235 29.8
Gohir.D11G110600 Gossypium hirsutum HOM05D004916 ORTHO05D006147 2.9e-07 59.7 202 30.7
Lalb_Chr15g0077851 Lupinus albus HOM05D004916 ORTHO05D006147 2.9e-07 59.7 202 31.7
Medtr7g110880 Medicago truncatula HOM05D004916 ORTHO05D006147 2.9e-07 59.7 202 35.6
PSO761G0152 Papaver somniferum HOM05D004916 ORTHO05D006147 2.9e-07 59.7 210 31.4
TAR553G0002 Trochodendron aralioides HOM05D004916 ORTHO05D006147 2.9e-07 59.7 212 32.5
QL12p035219 Quercus lobata HOM05D004916 ORTHO05D006147 4.9e-07 58.9 207 30.0
DCAR_002943 Daucus carota HOM05D004916 ORTHO05D006147 8.3e-07 58.2 77 45.5
Atru.chr5.842 Acer truncatum HOM05D004916 ORTHO05D006147 1.1e-06 57.8 226 29.6
Duzib133G0180 Durio zibethinus HOM05D004916 ORTHO05D006147 1.1e-06 57.8 227 31.7
Sabra14G0081700 Salix brachista HOM05D004916 ORTHO05D006147 1.1e-06 57.8 219 31.1
TAR633G1842 Trochodendron aralioides HOM05D004916 ORTHO05D006147 1.1e-06 57.8 186 32.8
CiPaw.07G126700 Carya illinoinensis HOM05D004916 ORTHO05D006147 1.4e-06 57.4 223 31.8
THA.LOC104815913 Tarenaya hassleriana HOM05D004916 ORTHO05D006147 1.9e-06 57.0 196 32.1
TWI23G0103 Tripterygium wilfordii HOM05D004916 ORTHO05D006147 1.9e-06 57.0 159 32.1
TAR365G1046 Trochodendron aralioides HOM05D004916 ORTHO05D006147 1.9e-06 57.0 218 32.1
GSVIVG01028232001 Vitis vinifera HOM05D004916 ORTHO05D006147 1.9e-06 57.0 73 52.1
Cpa.g.sc57.33 Carica papaya HOM05D004916 ORTHO05D006147 4.1e-06 55.8 232 31.9
CiPaw.08G082200 Carya illinoinensis HOM05D004916 ORTHO05D006147 5.4e-06 55.5 93 44.1
RcHm_v2.0_Chr3g0485631 Rosa chinensis HOM05D004916 ORTHO05D006147 5.4e-06 55.5 84 40.5
Gorai.001G148600 Gossypium raimondii HOM05D004916 ORTHO05D006147 9.2e-06 54.7 126 34.1
Psat3g016360 Pisum sativum HOM05D004916 ORTHO05D006147 9.2e-06 54.7 80 43.8


User provided reference genes

Program Settings