Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 1.1e-43 179.5 86 100.0
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 1.1e-43 179.5 86 100.0
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 2.7e-26 121.7 86 73.3
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 3.6e-26 121.3 86 72.1
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 6.1e-26 120.6 86 72.1
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 6.1e-26 120.6 86 72.1
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 1.8e-25 119.0 86 70.9
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 1.8e-25 119.0 86 70.9
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 1.8e-25 119.0 86 70.9
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 1.8e-25 119.0 86 70.9
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 1.8e-25 119.0 86 70.9
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 2.3e-25 118.6 86 72.1
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 4.0e-25 117.9 86 69.8
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 5.2e-25 117.5 86 69.8
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 8.8e-25 116.7 86 68.6
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 2.0e-24 115.5 86 68.6
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 2.0e-24 115.5 86 68.6
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 2.0e-24 115.5 86 68.6
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 2.6e-24 115.2 86 68.6
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 1.3e-23 112.8 86 67.4
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 1.3e-23 112.8 86 68.6
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.2e-21 106.3 85 61.2
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 5.9e-21 104.0 86 58.1
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 3.8e-20 101.3 86 57.0
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 8.5e-20 100.1 87 57.5
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.9e-19 99.0 87 57.5
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.9e-19 99.0 87 57.5
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 3.2e-19 98.2 86 59.3
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 4.2e-19 97.8 85 60.0
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 5.5e-19 97.4 86 59.3
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 7.2e-19 97.1 86 57.0
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 9.4e-19 96.7 86 57.0
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 9.4e-19 96.7 86 55.8
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 9.4e-19 96.7 86 55.8
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 9.4e-19 96.7 86 55.8
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.1e-18 95.5 85 58.8
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 2.7e-18 95.1 87 55.2
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 2.7e-18 95.1 84 58.3
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 2.7e-18 95.1 84 58.3
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 4.7e-18 94.4 86 54.7
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 6.1e-18 94.0 86 57.0
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 6.1e-18 94.0 86 57.0
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 6.1e-18 94.0 86 57.0
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 8.0e-18 93.6 83 56.6
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 8.0e-18 93.6 86 54.7
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 8.0e-18 93.6 86 55.8
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 8.0e-18 93.6 84 57.1
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 1.0e-17 93.2 86 55.8
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.4e-17 92.8 84 56.0
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 1.4e-17 92.8 86 53.5
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.4e-17 92.8 85 56.5
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 1.4e-17 92.8 86 55.8
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.4e-17 92.8 83 56.6
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 1.8e-17 92.4 86 53.5
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 2.3e-17 92.0 86 53.5
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 2.3e-17 92.0 87 51.7
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 2.3e-17 92.0 84 58.3
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 2.3e-17 92.0 83 56.6
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 3.0e-17 91.7 86 53.5
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 3.0e-17 91.7 86 53.5
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 3.0e-17 91.7 86 55.8
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 3.0e-17 91.7 86 55.8
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 3.0e-17 91.7 86 55.8
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 3.0e-17 91.7 86 52.3
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 3.0e-17 91.7 87 54.0
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 4.0e-17 91.3 98 50.0
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 4.0e-17 91.3 86 53.5
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 4.0e-17 91.3 86 53.5
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 4.0e-17 91.3 83 55.4
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 4.0e-17 91.3 86 55.8
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 5.2e-17 90.9 84 53.6
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 5.2e-17 90.9 84 53.6
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 5.2e-17 90.9 86 53.5
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 8.8e-17 90.1 78 57.7
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 8.8e-17 90.1 86 53.5
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 8.8e-17 90.1 86 54.7
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 1.2e-16 89.7 86 54.7
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 1.5e-16 89.4 87 51.7
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 2.0e-16 89.0 87 51.7
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 2.0e-16 89.0 83 55.4
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 2.0e-16 89.0 84 53.6
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 2.6e-16 88.6 84 56.0
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 2.6e-16 88.6 81 56.8
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 2.6e-16 88.6 86 53.5
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 3.4e-16 88.2 100 49.0
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 4.4e-16 87.8 86 52.3
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 4.4e-16 87.8 86 52.3
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 4.4e-16 87.8 86 50.0
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 5.7e-16 87.4 86 53.5
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 5.7e-16 87.4 86 53.5
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 5.7e-16 87.4 84 53.6
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 9.8e-16 86.7 85 49.4
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 1.3e-15 86.3 82 53.7
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 1.7e-15 85.9 86 51.2
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 2.2e-15 85.5 83 51.8
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 2.8e-15 85.1 83 51.8
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 2.8e-15 85.1 86 50.0
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 3.7e-15 84.7 81 53.1
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 3.7e-15 84.7 85 49.4
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 3.7e-15 84.7 86 48.8
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 3.7e-15 84.7 85 48.2
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 6.3e-15 84.0 86 48.8
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 6.3e-15 84.0 83 51.8
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 8.3e-15 83.6 84 52.4
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 8.3e-15 83.6 93 49.5
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.1e-14 83.2 79 53.2
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 1.1e-14 83.2 83 50.6
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 1.1e-14 83.2 84 50.0
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.4e-14 82.8 84 50.0
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.4e-14 82.8 84 51.2
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.8e-14 82.4 83 49.4
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.8e-14 82.4 83 49.4
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 2.4e-14 82.0 83 49.4
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 2.4e-14 82.0 83 49.4
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 4.1e-14 81.3 81 51.9
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 7.0e-14 80.5 83 50.6
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 7.0e-14 80.5 84 44.0
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 9.1e-14 80.1 52 73.1
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 2.7e-13 78.6 51 72.5
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 3.5e-13 78.2 80 47.5
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 1.7e-12 75.9 51 70.6
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 1.9e-11 72.4 49 65.3
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 1.9e-11 72.4 78 44.9
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 7.2e-11 70.5 51 64.7
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 9.5e-11 70.1 49 65.3
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 2.1e-10 68.9 80 43.8
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 3.0e-09 65.1 71 45.1
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 6.8e-09 63.9 48 58.3
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 1.2e-08 63.2 83 39.8
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 2.0e-08 62.4 82 41.5
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 9.8e-08 60.1 41 65.9


User provided reference genes

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