Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p39340 Brassica napus HOM05D028257 ORTHO05D040355 4.7e-34 147.1 67 100.0
BolC4t25501H Brassica oleracea HOM05D028257 ORTHO05D040355 4.7e-34 147.1 67 100.0
BolC4t25540H Brassica oleracea HOM05D028257 ORTHO05D003771 3.1e-33 144.4 65 100.0
A04p06210 Brassica napus HOM05D028257 ORTHO05D102885 8.7e-20 99.8 48 93.8
BcaB01g00296 Brassica carinata HOM05D000204 ORTHO05D003771 2.1e-13 78.6 44 81.8
BcaC07g39686 Brassica carinata HOM05D000204 ORTHO05D003771 2.1e-13 78.6 44 81.8
A09p46280 Brassica napus HOM05D000204 ORTHO05D003771 2.1e-13 78.6 44 81.8
C08p28480 Brassica napus HOM05D000057 ORTHO05D003771 2.1e-13 78.6 44 81.8
BraA09t40091Z Brassica rapa HOM05D000204 ORTHO05D003771 2.1e-13 78.6 44 81.8
Thhalv10011019m.g Eutrema salsugineum HOM05D000204 ORTHO05D003771 2.1e-13 78.6 44 79.5
Sp5g09090 Schrenkiella parvula HOM05D000057 ORTHO05D003771 2.1e-13 78.6 44 81.8
BcaB02g07798 Brassica carinata HOM05D000204 ORTHO05D003771 7.9e-13 76.6 44 79.5
A07p21480 Brassica napus HOM05D000057 ORTHO05D003771 1.3e-12 75.9 44 79.5
BraA07t29835Z Brassica rapa HOM05D000057 ORTHO05D003771 1.3e-12 75.9 44 79.5
C06p21080 Brassica napus HOM05D000057 ORTHO05D003771 3.0e-12 74.7 44 77.3
BolC6t37293H Brassica oleracea HOM05D000057 ORTHO05D003771 3.0e-12 74.7 44 77.3
Carub.0005s1979 Capsella rubella HOM05D000204 ORTHO05D003771 6.2e-10 67.0 44 75.0
AL5G34160 Arabidopsis lyrata HOM05D000204 ORTHO05D003771 2.4e-09 65.1 44 72.7
AT3G53250 Arabidopsis thaliana HOM05D000204 ORTHO05D003771 2.4e-09 65.1 44 72.7
Aa31LG5G22290 Aethionema arabicum HOM05D000204 ORTHO05D003771 3.1e-09 64.7 44 68.2
AL4G33350 Arabidopsis lyrata HOM05D000204 ORTHO05D003771 3.1e-09 64.7 44 68.2
AT2G37030 Arabidopsis thaliana HOM05D000204 ORTHO05D003771 3.1e-09 64.7 44 68.2
Carub.0004s1890 Capsella rubella HOM05D000204 ORTHO05D003771 3.1e-09 64.7 44 68.2
A05p08810 Brassica napus HOM05D000204 ORTHO05D003771 4.0e-09 64.3 57 54.4
THA.LOC104823459 Tarenaya hassleriana HOM05D000204 ORTHO05D003771 4.0e-09 64.3 44 65.9
BcaC02g07557 Brassica carinata HOM05D000204 ORTHO05D003771 9.0e-09 63.2 44 68.2
BcaC02g07559 Brassica carinata HOM05D000204 ORTHO05D003771 9.0e-09 63.2 44 68.2
A04p28300 Brassica napus HOM05D000204 ORTHO05D003771 9.0e-09 63.2 44 68.2
BraA04t18312Z Brassica rapa HOM05D000204 ORTHO05D003771 9.0e-09 63.2 44 68.2
BraA05t19848Z Brassica rapa HOM05D000204 ORTHO05D003771 9.0e-09 63.2 42 66.7
Thhalv10017913m.g Eutrema salsugineum HOM05D000204 ORTHO05D003771 9.0e-09 63.2 46 65.2
Potri.016G091500 Populus trichocarpa HOM05D000204 ORTHO05D003771 9.0e-09 63.2 42 71.4
Aa31LG10G8460 Aethionema arabicum HOM05D000204 ORTHO05D003771 1.2e-08 62.8 44 65.9
BcaB06g28966 Brassica carinata HOM05D000204 ORTHO05D003771 1.2e-08 62.8 44 68.2
BcaB06g28969 Brassica carinata HOM05D000204 ORTHO05D003771 1.2e-08 62.8 44 68.2
BcaB06g28972 Brassica carinata HOM05D000204 ORTHO05D003771 1.2e-08 62.8 44 68.2
BolC4t22686H Brassica oleracea HOM05D000204 ORTHO05D003771 1.2e-08 62.8 57 52.6
CARHR131520 Cardamine hirsuta HOM05D000204 ORTHO05D003771 1.2e-08 62.8 44 65.9
CARHR163020 Cardamine hirsuta HOM05D000204 ORTHO05D003771 1.2e-08 62.8 44 70.5
EL10Ac7g17925 Beta vulgaris HOM05D000057 ORTHO05D003771 1.5e-08 62.4 42 64.3
BcaB02g09309 Brassica carinata HOM05D000204 ORTHO05D003771 1.5e-08 62.4 44 61.4
C04p10930 Brassica napus HOM05D000204 ORTHO05D003771 1.5e-08 62.4 42 66.7
CAN.G622.8 Capsicum annuum HOM05D000204 ORTHO05D003771 2.0e-08 62.0 42 64.3
Nitab4.5_0000101g0320 Nicotiana tabacum HOM05D000204 ORTHO05D003771 2.0e-08 62.0 42 64.3
THA.LOC104806489 Tarenaya hassleriana HOM05D000204 ORTHO05D003771 2.0e-08 62.0 62 46.8
AUR62001144 Chenopodium quinoa HOM05D000204 ORTHO05D003771 2.6e-08 61.6 42 64.3
AUR62016533 Chenopodium quinoa HOM05D000204 ORTHO05D003771 2.6e-08 61.6 42 64.3
Migut.J00527 Erythranthe guttata HOM05D000057 ORTHO05D003771 2.6e-08 61.6 44 61.4
TWI77G0312 Tripterygium wilfordii HOM05D000204 ORTHO05D003771 2.6e-08 61.6 68 48.5
Atru.chr8.1849 Acer truncatum HOM05D000204 ORTHO05D003771 3.4e-08 61.2 44 63.6
Peaxi162Scf00123g01125 Petunia axillaris HOM05D000204 ORTHO05D003771 3.4e-08 61.2 42 61.9
BolC4t28057H Brassica oleracea HOM05D000204 ORTHO05D003771 4.5e-08 60.8 44 65.9
BcaC02g11828 Brassica carinata HOM05D000204 ORTHO05D003771 5.8e-08 60.5 42 64.3
Gohir.A04G073100 Gossypium hirsutum HOM05D000204 ORTHO05D003771 5.8e-08 60.5 44 63.6
Sp4g19330 Schrenkiella parvula HOM05D000204 ORTHO05D003771 5.8e-08 60.5 44 63.6
BcaC01g05627 Brassica carinata HOM05D000204 ORTHO05D003771 7.6e-08 60.1 44 65.9
A03p20400 Brassica napus HOM05D000204 ORTHO05D003771 7.6e-08 60.1 44 65.9
C03p23990 Brassica napus HOM05D000204 ORTHO05D003771 7.6e-08 60.1 44 65.9
BolC3t14790H Brassica oleracea HOM05D000204 ORTHO05D003771 7.6e-08 60.1 44 65.9
BraA03t11284Z Brassica rapa HOM05D000204 ORTHO05D003771 7.6e-08 60.1 44 65.9
Ciclev10013508m.g Citrus clementina HOM05D000204 ORTHO05D003771 7.6e-08 60.1 46 60.9
BcaB01g03799 Brassica carinata HOM05D000204 ORTHO05D003771 1.0e-07 59.7 44 63.6
Solyc09g007970.3 Solanum lycopersicum HOM05D000204 ORTHO05D003771 1.7e-07 58.9 45 57.8
PGSC0003DMG400021565 Solanum tuberosum HOM05D000204 ORTHO05D003771 1.7e-07 58.9 45 57.8
Duzib106G0717 Durio zibethinus HOM05D000204 ORTHO05D003771 2.2e-07 58.5 42 66.7
Thecc.05G063000 Theobroma cacao HOM05D000204 ORTHO05D003771 2.2e-07 58.5 42 66.7
Ah.08g214740 Amaranthus hybridus HOM05D000204 ORTHO05D003771 2.9e-07 58.2 42 57.1
Nn2g11521 Nelumbo nucifera HOM05D000204 ORTHO05D003771 2.9e-07 58.2 42 59.5
CANSAT80G0770 Cannabis sativa HOM05D000057 ORTHO05D003771 3.8e-07 57.8 44 54.5
COL.COLO4_26988 Corchorus olitorius HOM05D000204 ORTHO05D003771 3.8e-07 57.8 44 63.6
PGSC0003DMG400031363 Solanum tuberosum HOM05D000057 ORTHO05D003771 4.9e-07 57.4 45 57.8
CiPaw.09G174100 Carya illinoinensis HOM05D000204 ORTHO05D003771 6.5e-07 57.0 42 59.5
Nn2g13730 Nelumbo nucifera HOM05D000204 ORTHO05D003771 6.5e-07 57.0 42 64.3
Solyc10g086200.1 Solanum lycopersicum HOM05D000057 ORTHO05D003771 6.5e-07 57.0 43 60.5
GSVIVG01025708001 Vitis vinifera HOM05D000204 ORTHO05D003771 6.5e-07 57.0 42 64.3
FvH4_6g16110 Fragaria vesca HOM05D000204 ORTHO05D003771 8.4e-07 56.6 47 55.3
FAN02G1080 Fragaria x ananassa HOM05D000204 ORTHO05D003771 8.4e-07 56.6 47 55.3
FAN14G3042 Fragaria x ananassa HOM05D000204 ORTHO05D003771 8.4e-07 56.6 47 55.3
FAN14G3398 Fragaria x ananassa HOM05D000204 ORTHO05D003771 8.4e-07 56.6 47 55.3
FAN14G4360 Fragaria x ananassa HOM05D000204 ORTHO05D003771 8.4e-07 56.6 47 55.3
Rhsim04G0145000 Rhododendron simsii HOM05D000204 ORTHO05D003771 8.4e-07 56.6 44 61.4
BcaB01g03797 Brassica carinata HOM05D000204 ORTHO05D003771 1.1e-06 56.2 42 64.3
Gorai.009G416100 Gossypium raimondii HOM05D000204 ORTHO05D003771 1.1e-06 56.2 44 59.1
Dinv35768 Davidia involucrata HOM05D000057 ORTHO05D003771 1.4e-06 55.8 44 56.8
Gohir.A09G148500 Gossypium hirsutum HOM05D000204 ORTHO05D003771 1.4e-06 55.8 42 64.3
Gohir.D04G112000 Gossypium hirsutum HOM05D000204 ORTHO05D003771 1.4e-06 55.8 44 59.1
Gohir.D09G144300 Gossypium hirsutum HOM05D000204 ORTHO05D003771 1.4e-06 55.8 42 64.3
Gorai.006G165600 Gossypium raimondii HOM05D000204 ORTHO05D003771 1.4e-06 55.8 42 64.3
ClCG04G009170 Citrullus lanatus HOM05D000204 ORTHO05D003771 1.9e-06 55.5 44 59.1
RcHm_v2.0_Chr3g0469951 Rosa chinensis HOM05D000204 ORTHO05D003771 1.9e-06 55.5 47 53.2
CAN.G509.14 Capsicum annuum HOM05D000057 ORTHO05D003771 2.5e-06 55.1 43 58.1
QL07p044058 Quercus lobata HOM05D000204 ORTHO05D003771 2.5e-06 55.1 42 59.5
HanXRQChr11g0350261 Helianthus annuus HOM05D000204 ORTHO05D003771 3.2e-06 54.7 42 64.3
Manes.08G008700 Manihot esculenta HOM05D000204 ORTHO05D003771 3.2e-06 54.7 59 49.2
Lj2P115T39 Lonicera japonica HOM05D000204 ORTHO05D003771 4.2e-06 54.3 42 61.9
Ca_11486_v3 Cicer arietinum L. HOM05D000204 ORTHO05D003771 5.5e-06 53.9 44 59.1
MELO3C014219.2 Cucumis melo HOM05D000204 ORTHO05D003771 5.5e-06 53.9 42 59.5
HanXRQChr02g0052181 Helianthus annuus HOM05D000057 ORTHO05D003771 5.5e-06 53.9 45 55.6
MD04G1095800 Malus domestica HOM05D000204 ORTHO05D003771 5.5e-06 53.9 42 54.8
Haze_20574 Corylus avellana HOM05D000204 ORTHO05D003771 7.1e-06 53.5 44 59.1
MD12G1115800 Malus domestica HOM05D000204 ORTHO05D003771 7.1e-06 53.5 42 57.1
ATR0048G025 Amborella trichopoda HOM05D000204 ORTHO05D003771 9.3e-06 53.1 41 56.1
Cpa.g.sc2443.1 Carica papaya HOM05D000204 ORTHO05D003771 9.3e-06 53.1 42 52.4
Prupe.6G234900 Prunus persica HOM05D000204 ORTHO05D003771 9.3e-06 53.1 42 57.1


User provided reference genes

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