Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p39160 Brassica napus HOM05D004128 ORTHO05D008395 3.8e-69 264.6 126 100.0
BolC9t55613H Brassica oleracea HOM05D004128 ORTHO05D008395 3.0e-58 228.4 114 95.6
C09p52720 Brassica napus HOM05D004128 ORTHO05D008395 5.2e-58 227.6 114 95.6
C03p49780 Brassica napus HOM05D004128 ORTHO05D008395 2.6e-57 225.3 114 94.7
BolC6t38472H Brassica oleracea HOM05D004128 ORTHO05D008395 1.3e-56 223.0 114 93.0
BraA07t30708Z Brassica rapa HOM05D004128 ORTHO05D008395 1.7e-56 222.6 114 92.1
BraA10t42724Z Brassica rapa HOM05D004128 ORTHO05D008395 1.7e-56 222.6 114 92.1
C04p23890 Brassica napus HOM05D004128 ORTHO05D008395 3.7e-56 221.5 114 93.0
BolC2t07285H Brassica oleracea HOM05D004128 ORTHO05D008395 6.4e-56 220.7 114 93.0
C06p01800 Brassica napus HOM05D004128 ORTHO05D008395 2.7e-54 215.3 114 91.2
BolC8t50772H Brassica oleracea HOM05D004128 ORTHO05D008395 3.5e-54 214.9 114 90.4
C07p34800 Brassica napus HOM05D004128 ORTHO05D008395 3.4e-49 198.4 99 94.9
C01p25840 Brassica napus HOM05D004128 ORTHO05D008395 1.9e-47 192.6 99 90.9
BraA03t14882Z Brassica rapa HOM05D004128 ORTHO05D008395 7.0e-47 190.7 129 72.9
BolC6t38817H Brassica oleracea HOM05D004128 ORTHO05D013239 8.6e-45 183.7 93 93.5
BraA05t20993Z Brassica rapa HOM05D004128 ORTHO05D008395 2.5e-44 182.2 93 91.4
C01p27640 Brassica napus HOM05D004128 ORTHO05D008395 4.7e-43 177.9 93 89.2
BolC9t56577H Brassica oleracea HOM05D004128 ORTHO05D008395 1.8e-42 176.0 129 68.2
BolC8t47837H Brassica oleracea HOM05D004128 ORTHO05D008395 4.0e-42 174.9 135 64.4
C07p33860 Brassica napus HOM05D004128 ORTHO05D008395 3.4e-41 171.8 129 67.4
C04p26230 Brassica napus HOM05D004128 ORTHO05D008395 4.6e-38 161.4 117 69.2
BolC4t24183H Brassica oleracea HOM05D004128 ORTHO05D008395 4.6e-38 161.4 117 69.2
BraA05t21895Z Brassica rapa HOM05D004128 ORTHO05D008395 1.9e-28 129.4 65 93.8
BcaB01g01318 Brassica carinata HOM05D004128 ORTHO05D008395 9.6e-28 127.1 118 54.2
BcaNung01161 Brassica carinata HOM05D007203 ORTHO05D011558 6.8e-26 120.9 91 67.0
Aa31LG10G9040 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.1e-22 109.4 112 46.4
BolC6t37871H Brassica oleracea HOM05D004128 ORTHO05D008395 1.9e-20 102.8 55 83.6
BolC2t09432H Brassica oleracea HOM05D004128 ORTHO05D008395 4.3e-20 101.7 55 81.8
BraA08t33244Z Brassica rapa HOM05D004128 ORTHO05D008395 5.6e-20 101.3 55 81.8
C08p21910 Brassica napus HOM05D004128 ORTHO05D008395 9.6e-20 100.5 55 81.8
BolC9t58724H Brassica oleracea HOM05D004128 ORTHO05D008395 1.6e-19 99.8 55 81.8
C03p60470 Brassica napus HOM05D004128 ORTHO05D008395 2.1e-19 99.4 55 81.8
Carub.0093s0002 Capsella rubella HOM05D003554 ORTHO05D005130 2.0e-17 92.8 128 36.7
Carub.0007s3074 Capsella rubella HOM05D003554 ORTHO05D005130 4.4e-17 91.7 131 39.7
Aa31sc111G40 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.9e-16 89.0 127 37.8
BcaB06g26180 Brassica carinata HOM05D009532 ORTHO05D005130 6.4e-16 87.8 116 38.8
Aa31LG11G8070 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.1e-15 87.0 114 43.9
Aa31LG6G9970 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.1e-15 87.0 138 34.1
BcaC03g16254 Brassica carinata HOM05D003554 ORTHO05D005130 1.9e-15 86.3 120 36.7
Carub.0001s3566 Capsella rubella HOM05D003554 ORTHO05D005130 3.2e-15 85.5 121 36.4
Carub.0006s2609 Capsella rubella HOM05D003554 ORTHO05D005130 4.2e-15 85.1 121 36.4
Carub.0004s0685 Capsella rubella HOM05D003554 ORTHO05D005130 5.4e-15 84.7 121 38.8
C05p37400 Brassica napus HOM05D003554 ORTHO05D005130 9.3e-15 84.0 116 40.5
Carub.0003s2756 Capsella rubella HOM05D003554 ORTHO05D005130 9.3e-15 84.0 123 36.6
Carub.0002s0984 Capsella rubella HOM05D003554 ORTHO05D005130 1.6e-14 83.2 121 37.2
Carub.0002s0983 Capsella rubella HOM05D003554 ORTHO05D005130 2.1e-14 82.8 121 37.2
Aa31sc129G60 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.7e-14 82.4 128 34.4
Carub.0007s0014 Capsella rubella HOM05D003554 ORTHO05D005130 2.7e-14 82.4 121 35.5
C02p33250 Brassica napus HOM05D003554 ORTHO05D005130 4.6e-14 81.6 114 37.7
Carub.0278s0001 Capsella rubella HOM05D003554 ORTHO05D005130 4.6e-14 81.6 121 38.0
BcaB03g16128 Brassica carinata HOM05D003554 ORTHO05D005130 6.0e-14 81.3 131 35.9
BcaB08g35293 Brassica carinata HOM05D003554 ORTHO05D005130 6.0e-14 81.3 119 37.0
Carub.0002s0995 Capsella rubella HOM05D003554 ORTHO05D005130 1.0e-13 80.5 121 38.0
BcaB07g32749 Brassica carinata HOM05D008316 ORTHO05D013031 1.7e-13 79.7 77 50.6
BolC4t27914H Brassica oleracea HOM05D008062 ORTHO05D008395 2.3e-13 79.3 64 53.1
AL2G17330 Arabidopsis lyrata HOM05D003554 ORTHO05D008395 5.1e-13 78.2 128 35.2
C06p37060 Brassica napus HOM05D004128 ORTHO05D008395 6.6e-13 77.8 41 87.8
AL1G56530 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 8.7e-13 77.4 92 44.6
AL1G56540 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 8.7e-13 77.4 92 44.6
BcaB05g23503 Brassica carinata HOM05D003554 ORTHO05D008395 8.7e-13 77.4 116 36.2
Carub.0003s3367 Capsella rubella HOM05D003554 ORTHO05D005130 8.7e-13 77.4 103 37.9
BcaB02g10637 Brassica carinata HOM05D003554 ORTHO05D005130 1.5e-12 76.6 113 33.6
BcaB02g11541 Brassica carinata HOM05D003554 ORTHO05D005130 1.9e-12 76.3 131 33.6
BcaC01g00876 Brassica carinata HOM05D004128 ORTHO05D008395 1.9e-12 76.3 38 94.7
BolC5t30880H Brassica oleracea HOM05D004128 ORTHO05D013239 2.5e-12 75.9 41 85.4
A03p58150 Brassica napus HOM05D004128 ORTHO05D008395 3.3e-12 75.5 48 72.9
BolC3t18729H Brassica oleracea HOM05D004128 ORTHO05D008395 3.3e-12 75.5 64 50.0
A06p29400 Brassica napus HOM05D004128 ORTHO05D008395 4.3e-12 75.1 48 72.9
BcaC08g42812 Brassica carinata HOM05D008825 ORTHO05D013031 5.6e-12 74.7 77 46.8
C01p48540 Brassica napus HOM05D004128 ORTHO05D020127 5.6e-12 74.7 45 75.6
C02p41980 Brassica napus HOM05D004128 ORTHO05D008395 5.6e-12 74.7 39 89.7
BcaC05g27750 Brassica carinata HOM05D008825 ORTHO05D013031 7.4e-12 74.3 77 46.8
BolC6t36978H Brassica oleracea HOM05D004128 ORTHO05D008395 7.4e-12 74.3 37 91.9
Aa31LG1G6440 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.6e-11 73.2 90 40.0
C03p35510 Brassica napus HOM05D004128 ORTHO05D008395 1.6e-11 73.2 48 70.8
Aa31sc347G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.1e-11 72.8 115 37.4
BcaB01g01280 Brassica carinata HOM05D003554 ORTHO05D005130 2.1e-11 72.8 132 33.3
BolC7t43900H Brassica oleracea HOM05D004128 ORTHO05D008395 3.6e-11 72.0 45 73.3
C03p76590 Brassica napus HOM05D008062 ORTHO05D011707 4.8e-11 71.6 54 55.6
BolC9t53917H Brassica oleracea HOM05D008062 ORTHO05D011707 4.8e-11 71.6 54 55.6
BraA05t20613Z Brassica rapa HOM05D008062 ORTHO05D008395 4.8e-11 71.6 54 55.6
BraA09t38520Z Brassica rapa HOM05D004128 ORTHO05D008395 4.8e-11 71.6 45 71.1
BcaB04g17410 Brassica carinata HOM05D003554 ORTHO05D005130 6.2e-11 71.2 139 33.1
A07p17770 Brassica napus HOM05D004128 ORTHO05D008395 8.1e-11 70.9 37 83.8
BcaC09g50406 Brassica carinata HOM05D004128 ORTHO05D008395 2.0e-09 66.2 34 88.2
C02p57980 Brassica napus HOM05D017905 ORTHO05D017243 3.4e-09 65.5 85 38.8
C03p82170 Brassica napus HOM05D004128 ORTHO05D024629 3.4e-09 65.5 73 50.7
BolC3t20535H Brassica oleracea HOM05D004128 ORTHO05D024629 3.4e-09 65.5 73 50.7
BolC6t36233H Brassica oleracea HOM05D004128 ORTHO05D024421 3.4e-09 65.5 49 65.3
BolC9t57647H Brassica oleracea HOM05D004128 ORTHO05D024421 3.4e-09 65.5 49 65.3
BcaB05g24479 Brassica carinata HOM05D008316 ORTHO05D017243 7.6e-09 64.3 77 42.9
Sp6g09630 Schrenkiella parvula HOM05D004128 ORTHO05D008395 7.6e-09 64.3 55 52.7
C05p41890 Brassica napus HOM05D004128 ORTHO05D024421 1.3e-08 63.5 49 63.3
BolC5t32921H Brassica oleracea HOM05D004128 ORTHO05D024421 1.3e-08 63.5 49 63.3
Aa31LG10G9030 Aethionema arabicum HOM05D003554 ORTHO05D008395 1.7e-08 63.2 92 34.8
BolC3t13324H Brassica oleracea HOM05D003554 ORTHO05D008395 1.7e-08 63.2 92 37.0
BolC3t17148H Brassica oleracea HOM05D014471 ORTHO05D017646 1.7e-08 63.2 92 38.0
BcaB07g31822 Brassica carinata HOM05D003554 ORTHO05D032345 2.2e-08 62.8 86 36.0
BcaB06g26193 Brassica carinata HOM05D003554 ORTHO05D014926 2.9e-08 62.4 97 36.1
Aa31LG6G10050 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.9e-07 59.7 113 38.9
Aa31sc538G10 Aethionema arabicum HOM05D003554 ORTHO05D008395 2.4e-07 59.3 116 32.8
BcaC01g04710 Brassica carinata HOM05D008825 ORTHO05D013031 2.4e-07 59.3 56 44.6
BcaB08g35391 Brassica carinata HOM05D003554 ORTHO05D005130 3.2e-07 58.9 113 30.1
BcaC04g20884 Brassica carinata HOM05D009532 ORTHO05D013511 4.2e-07 58.5 69 39.1
A01p27690 Brassica napus HOM05D007203 ORTHO05D013810 5.5e-07 58.2 39 66.7
A02p26840 Brassica napus HOM05D007203 ORTHO05D013810 5.5e-07 58.2 39 66.7
A09p21540 Brassica napus HOM05D007203 ORTHO05D013810 5.5e-07 58.2 39 66.7
BcaC01g01745 Brassica carinata HOM05D003554 ORTHO05D014926 7.1e-07 57.8 97 32.0
Aa31LG9G11090 Aethionema arabicum HOM05D011111 ORTHO05D001112 9.3e-07 57.4 80 37.5
BcaC08g45828 Brassica carinata HOM05D003554 ORTHO05D014926 9.3e-07 57.4 92 32.6
BolC6t37270H Brassica oleracea HOM05D004128 ORTHO05D008395 9.3e-07 57.4 48 56.2
BraA09t38864Z Brassica rapa HOM05D003554 ORTHO05D017243 9.3e-07 57.4 56 44.6
Aa31LG7G10730 Aethionema arabicum HOM05D003554 ORTHO05D008395 1.2e-06 57.0 112 33.9
AT5G24275 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 1.2e-06 57.0 54 42.6
BcaB02g11054 Brassica carinata HOM05D009532 ORTHO05D005130 1.2e-06 57.0 67 38.8
BcaC08g43125 Brassica carinata HOM05D009532 ORTHO05D013511 1.2e-06 57.0 69 37.7
C03p33430 Brassica napus HOM05D007203 ORTHO05D013810 1.2e-06 57.0 39 66.7
BcaB08g35337 Brassica carinata HOM05D003554 ORTHO05D005130 2.7e-06 55.8 105 32.4
BcaB03g16082 Brassica carinata HOM05D026233 ORTHO05D005130 3.5e-06 55.5 58 46.6
BcaC09g51181 Brassica carinata HOM05D004128 ORTHO05D024421 3.5e-06 55.5 49 59.2
BolC6t39170H Brassica oleracea HOM05D004128 ORTHO05D008395 3.5e-06 55.5 41 63.4
BolC8t49801H Brassica oleracea HOM05D007203 ORTHO05D013810 3.5e-06 55.5 39 64.1
Aa31sc454G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 4.6e-06 55.1 91 34.1
BcaC08g42899 Brassica carinata HOM05D003554 ORTHO05D005130 7.9e-06 54.3 113 27.4


User provided reference genes

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