Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 1.7e-182 642.5 321 100.0
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 2.7e-175 618.6 327 96.3
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 6.6e-166 587.4 329 90.3
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 3.3e-165 585.1 325 90.8
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 7.3e-165 583.9 325 90.5
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 4.0e-147 525.0 309 84.8
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 2.7e-143 512.3 319 80.9
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 1.0e-142 510.4 355 74.4
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 6.6e-142 507.7 351 75.2
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 6.6e-142 507.7 366 72.7
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 2.5e-141 505.8 368 71.7
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 3.3e-141 505.4 368 71.5
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 1.8e-139 499.6 354 74.0
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 1.8e-139 499.6 347 75.5
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 1.8e-139 499.6 360 73.9
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 1.3e-121 440.3 339 67.6
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 1.9e-120 436.4 358 62.0
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 1.8e-115 419.9 313 69.6
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 3.0e-110 402.5 201 99.5
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 2.1e-95 353.2 335 54.9
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 8.5e-89 331.3 323 51.4
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 4.2e-88 328.9 325 52.9
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 3.6e-87 325.9 316 54.7
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 6.1e-87 325.1 322 54.7
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 1.8e-86 323.6 326 50.3
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 1.1e-85 320.9 332 51.8
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 1.5e-85 320.5 331 52.9
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 2.6e-85 319.7 331 52.3
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 2.6e-85 319.7 332 50.3
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 2.2e-84 316.6 331 51.7
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 2.8e-84 316.2 326 51.8
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 2.8e-84 316.2 299 51.8
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 6.3e-84 315.1 321 52.6
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 1.1e-83 314.3 334 49.1
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 1.1e-83 314.3 316 50.6
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 2.4e-83 313.2 337 50.4
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 9.1e-83 311.2 327 50.5
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 9.1e-83 311.2 324 50.6
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 2.0e-82 310.1 328 50.9
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 4.5e-82 308.9 327 48.9
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 5.9e-82 308.5 340 48.5
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 7.7e-82 308.1 326 50.9
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 1.3e-81 307.4 327 48.6
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 1.3e-81 307.4 322 50.0
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 2.2e-81 306.6 317 51.1
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 3.8e-81 305.8 322 50.0
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 3.8e-81 305.8 318 50.9
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 5.0e-81 305.4 322 50.0
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 5.0e-81 305.4 320 50.0
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 8.5e-81 304.7 331 49.8
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 1.1e-80 304.3 326 50.6
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 1.9e-80 303.5 322 50.3
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 3.2e-80 302.8 326 50.6
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 1.6e-79 300.4 302 51.3
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 2.1e-79 300.1 321 48.9
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 6.1e-79 298.5 324 48.1
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 6.1e-79 298.5 317 51.7
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 6.1e-79 298.5 329 49.2
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 8.0e-79 298.1 323 49.2
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 8.0e-79 298.1 319 47.6
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 1.0e-78 297.7 327 49.5
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 1.0e-78 297.7 319 50.2
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 2.3e-78 296.6 318 49.7
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 3.0e-78 296.2 331 48.9
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 7.5e-77 291.6 321 46.4
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 2.2e-76 290.0 296 50.3
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 2.2e-76 290.0 290 51.0
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 6.3e-76 288.5 319 47.0
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 3.1e-75 286.2 328 47.6
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 4.1e-75 285.8 329 48.0
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 1.6e-74 283.9 333 46.2
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 4.5e-74 282.3 327 49.8
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 1.7e-73 280.4 368 43.8
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 6.5e-73 278.5 291 49.5
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 8.5e-73 278.1 320 47.8
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 3.2e-72 276.2 319 47.3
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 5.5e-72 275.4 332 44.6
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 7.2e-72 275.0 316 48.7
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 4.7e-71 272.3 319 48.3
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 4.7e-71 272.3 320 45.9
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 4.0e-70 269.2 332 45.2
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 4.0e-70 269.2 346 42.8
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 4.0e-70 269.2 319 45.1
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 1.2e-69 267.7 257 52.1
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 2.0e-69 266.9 332 44.6
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 4.4e-69 265.8 259 53.3
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 1.7e-68 263.8 296 46.3
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 2.8e-68 263.1 337 43.0
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 1.4e-67 260.8 281 50.9
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 2.4e-67 260.0 345 44.3
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 2.4e-67 260.0 346 42.5
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 4.1e-67 259.2 332 44.6
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 7.0e-67 258.5 323 44.9
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 2.5e-64 250.0 288 45.5
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 3.6e-63 246.1 335 43.3
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 2.6e-61 240.0 346 42.5
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 9.8e-61 238.0 323 41.8
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 1.7e-57 227.3 374 37.7
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 2.3e-57 226.9 333 43.2
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 4.7e-55 219.2 341 40.5
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 8.9e-54 214.9 347 39.5
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 4.3e-48 196.1 265 41.5
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 2.3e-41 173.7 253 38.3
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 3.9e-41 172.9 166 52.4
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 5.1e-41 172.6 323 36.8
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.6e-39 167.5 215 45.1
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 3.1e-38 163.3 323 36.8
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 2.3e-33 147.1 204 38.2
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 2.5e-32 143.7 205 42.0
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.2e-31 141.4 211 37.9
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.8e-31 140.2 211 37.4
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 2.4e-30 137.1 311 33.1
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 5.2e-30 136.0 326 32.5
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.8e-30 135.6 206 36.4
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.7e-28 131.0 201 36.8
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 4.9e-28 129.4 228 35.1
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.1e-27 128.3 213 36.2
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.1e-26 124.0 211 35.5
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.6e-26 122.9 206 35.4
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.0e-22 109.8 150 40.7
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 1.2e-18 98.2 183 37.2
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 1.1e-14 85.1 94 52.1
arahy.Tifrunner.gnm1.ann1.5GK804 Arachis hypogaea HOM05D006196 ORTHO05D007758 5.4e-11 72.8 103 40.8
arahy.Tifrunner.gnm1.ann1.K1D1LI Arachis hypogaea HOM05D006196 ORTHO05D007758 3.0e-09 67.0 103 39.8
Actinidia02755 Actinidia chinensis HOM05D006196 ORTHO05D007758 5.1e-09 66.2 76 39.5
Zm00001eb366830 Zea mays HOM05D006196 ORTHO05D007758 5.6e-08 62.8 111 39.6


User provided reference genes

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