Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 7.8e-82 307.0 146 100.0
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 2.1e-79 298.9 146 97.9
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 2.8e-79 298.5 146 97.9
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 2.4e-78 295.4 146 97.3
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 4.0e-78 294.7 146 96.6
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 6.4e-76 287.3 146 95.9
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 1.5e-72 276.2 146 93.2
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 2.4e-70 268.9 146 90.4
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 2.0e-69 265.8 145 86.9
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 1.4e-67 259.6 148 86.5
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 9.6e-64 246.9 142 81.7
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 2.8e-63 245.4 139 82.7
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 3.6e-63 245.0 137 83.9
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 4.0e-62 241.5 140 81.4
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 8.7e-57 223.8 138 74.6
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 9.6e-56 220.3 144 71.5
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 9.6e-56 220.3 135 75.6
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.3e-55 219.9 143 72.0
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 2.1e-55 219.2 137 75.2
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 3.7e-55 218.4 142 71.1
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 6.2e-55 217.6 140 74.3
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.4e-54 216.5 137 75.9
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 2.4e-54 215.7 136 72.8
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 3.1e-54 215.3 135 73.3
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 3.1e-54 215.3 135 74.8
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 4.0e-54 214.9 135 74.1
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 6.9e-54 214.2 138 71.0
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.2e-53 213.4 144 68.8
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.2e-53 213.4 138 71.0
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 1.5e-53 213.0 138 70.3
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 3.4e-53 211.8 135 73.3
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 5.8e-53 211.1 132 74.2
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 5.8e-53 211.1 142 69.7
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 1.3e-52 209.9 139 72.7
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.7e-52 209.5 137 68.6
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 2.2e-52 209.1 133 73.7
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 2.2e-52 209.1 137 68.6
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.2e-52 209.1 137 68.6
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 6.4e-52 207.6 139 71.9
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 6.4e-52 207.6 135 68.1
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 8.4e-52 207.2 136 72.8
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.9e-51 206.1 137 67.9
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 1.9e-51 206.1 140 68.6
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 5.5e-51 204.5 137 71.5
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 5.5e-51 204.5 137 71.5
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 9.3e-51 203.8 143 69.2
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.2e-50 203.4 138 70.3
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.6e-50 203.0 172 59.3
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 1.6e-50 203.0 145 69.0
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.7e-50 202.2 137 68.6
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 2.7e-50 202.2 145 68.3
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 4.6e-50 201.4 142 65.5
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 6.0e-50 201.1 138 68.8
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 7.9e-50 200.7 135 70.4
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.0e-49 200.3 138 68.1
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.3e-49 199.9 138 68.8
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 1.3e-49 199.9 138 68.8
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.8e-49 199.5 140 67.9
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.8e-49 199.5 140 67.9
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 2.3e-49 199.1 135 65.9
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 5.1e-49 198.0 151 64.9
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 6.7e-49 197.6 135 67.4
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 8.7e-49 197.2 137 67.2
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 8.7e-49 197.2 139 66.2
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 8.7e-49 197.2 133 66.9
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.5e-48 196.4 144 66.7
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 1.9e-48 196.1 140 70.0
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.9e-48 196.1 139 68.3
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 3.3e-48 195.3 139 70.5
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 5.6e-48 194.5 135 68.1
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 9.6e-48 193.7 135 68.1
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 2.8e-47 192.2 142 63.4
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.8e-47 192.2 142 63.4
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 2.8e-47 192.2 146 64.4
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 2.8e-47 192.2 134 65.7
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 2.8e-47 192.2 134 65.7
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 2.8e-47 192.2 134 65.7
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 8.2e-47 190.7 135 68.1
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 8.2e-47 190.7 134 64.9
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 1.4e-46 189.9 142 62.0
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 1.8e-46 189.5 135 65.9
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 2.4e-46 189.1 139 66.2
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 4.0e-46 188.3 129 67.4
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 6.9e-46 187.6 136 61.8
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 6.9e-46 187.6 139 66.9
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 9.0e-46 187.2 139 64.7
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 9.0e-46 187.2 148 62.8
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.2e-45 186.8 136 61.0
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.2e-45 186.8 138 65.2
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.2e-45 186.8 138 65.2
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.2e-45 186.8 136 61.8
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.2e-45 186.8 136 61.8
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 1.2e-45 186.8 129 65.9
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.2e-45 186.8 147 61.9
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 1.5e-45 186.4 143 60.1
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-45 186.4 143 60.1
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 5.8e-45 184.5 143 58.0
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 7.6e-45 184.1 136 60.3
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 7.6e-45 184.1 135 64.4
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 7.6e-45 184.1 135 66.7
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 1.7e-44 183.0 136 59.6
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.7e-44 183.0 156 62.8
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 2.2e-44 182.6 135 63.7
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 2.2e-44 182.6 137 59.9
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.9e-44 182.2 137 60.6
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 3.8e-44 181.8 137 62.8
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.9e-44 181.4 144 60.4
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 8.4e-44 180.6 130 64.6
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.1e-43 180.3 145 60.7
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 1.1e-43 180.3 135 65.2
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.9e-43 179.5 145 60.7
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.9e-43 179.5 138 57.2
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 2.5e-43 179.1 143 58.7
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 7.1e-43 177.6 135 61.5
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 1.6e-42 176.4 145 60.0
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 1.6e-42 176.4 140 57.9
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 2.1e-42 176.0 136 59.6
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 2.1e-42 176.0 136 59.6
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 3.5e-42 175.3 145 57.2
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 3.5e-42 175.3 140 57.9
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.0e-42 174.5 129 58.9
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 1.0e-41 173.7 135 57.8
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.3e-41 173.3 135 60.0
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 5.1e-41 171.4 144 61.8
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 9.7e-40 167.2 136 60.3
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 1.3e-39 166.8 136 57.4
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 1.6e-39 166.4 147 57.1
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.2e-39 166.0 137 59.1
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 2.8e-39 165.6 136 61.0
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 3.7e-39 165.2 136 57.4
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 1.8e-38 162.9 142 56.3
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 4.1e-38 161.8 135 59.3
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 6.9e-38 161.0 145 56.6
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.6e-37 159.1 209 43.1
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 2.6e-37 159.1 97 71.1
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 7.7e-37 157.5 137 51.8
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 1.3e-36 156.8 136 57.4
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.7e-36 156.4 143 53.1
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 2.2e-36 156.0 135 50.4
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 2.9e-36 155.6 145 55.2
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 5.0e-36 154.8 135 58.5
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 1.1e-35 153.7 115 66.1
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.9e-35 152.9 140 53.6
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 4.2e-35 151.8 134 59.0
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 7.9e-34 147.5 113 64.6
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 6.7e-33 144.4 133 51.1
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.9e-32 142.9 143 48.3
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 4.8e-31 138.3 143 49.0
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 1.5e-29 133.3 134 48.5
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.6e-29 132.5 135 51.9
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.7e-28 129.8 95 57.9
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 9.4e-27 124.0 135 47.4
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 2.1e-26 122.9 125 52.0
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 1.2e-21 107.1 131 45.0
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 3.4e-21 105.5 131 44.3
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.9e-20 102.4 105 50.5
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.6e-18 96.7 72 54.2
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.6e-18 96.7 117 41.0
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 2.1e-18 96.3 71 63.4
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 5.7e-16 88.2 74 68.9
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 1.3e-15 87.0 51 66.7
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 2.2e-15 86.3 50 64.0
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 8.2e-15 84.3 64 60.9
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.8e-14 83.2 91 51.6
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 7.0e-14 81.3 64 65.6
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 4.5e-13 78.6 99 43.4
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 1.3e-12 77.0 67 58.2
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 2.3e-09 66.2 65 50.8
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 4.0e-09 65.5 40 60.0
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 1.3e-07 60.5 46 63.0


User provided reference genes

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